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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 697 fasta sequence
[ATTACGTGACCAAATGCACTGAAAACTGATTTCAGTTCATCTGCAGTTGTATCTGGTGGTAAATTAGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT-TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG-TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA-CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT--TTCCTGT-CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA-GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA]
[+] EMBL CD201002 [ATTACGTGACCAAATGCACTGAAAACTGATTTCAGTTCATCTGCAGTTGTATCTGGTGGTAAATTAGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTNT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTT ]
[-] EMBL CD123565 [ GGTGGTAAATTAGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAG ]
[-] EMBL CD156789 [ ATTAGTAACACGTACAGTATTTTCATCGAATGGACGTNTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTTCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGAGGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTC ]
[+] EMBL CD189662 [ AGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGATCCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCGTTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTA ]
[-] EMBL CD194093 [ CTGTAGGTTCCGTTNTAGCACGAAGTAGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTGCATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTC ]
[+] EMBL CD132107 [ TTTTAGCACGAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCA ]
[+] EMBL CD157742 [ GAAGTTGTTCCTGTAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGTCTAAATTTCCA CCAGAGGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAAC ]
[+] EMBL CD157696 [ GAAGCAGGGCCTGAAACAATTGCATGTG TTACATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATNTCC ]
[+] EMBL CD093756 [ TAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTGTTTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTT CATTTTNNNTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTC ATAGGGAGGC ATTNCGAATCTTCGTTTAACTCATCTGTCCAAGACAC ]
[+] EMBL CD164726 [ TAACAATTGCAT TGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGG ]
[-] EMBL CD187043 [ AAAATGTCCACCTTTACAATAATACCAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTG TTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTGCTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGT ]
[+] EMBL CD157740 [ CGGCTGGGTACGTATTGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGTCCCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAA ]
[-] EMBL CD158637 [ TGGCTAAATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGT ]
[-] EMBL CD157681 [ CTANA TTCCACCCAGAAGGATCAGATTNTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA]
[-] EMBL CD157738 [ ATTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCA ]
[-] EMBL CD157689 [ ATTTCCA CCAGAAGGATCAGATTNTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA]
[-] EMBL CD157685 [ TTTCCA CCAGAAGGATCAGATTTTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA]
[-] EMBL CD157638 [ aTTCCACCCAGAAGGATCAGATTNTGAAGCACCAAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAACACACAGTCAAGTTGATCCGTAGAATCA]
[-] EMBL CD157622 [ cAACTTTCTCCATTTT TTCCTGT CCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA]
[-] EMBL CD157594 [ AAGCAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTTCAATA GGAGGCAATTCCGAATCTTCGTTTAACTCATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA]
consensusID : consensus_10750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[TCCCGGAAACCGCACGGAGTTGTTCCTGTAACAATTGCATTGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTGTTTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCACCAGAAGGATCATATTTTGAAGCACCAAACTTTCTCTATTTTTTCCTGCCCGCTACTTGAGAAGAAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTNNNAGATGAGGCAATTACGAATCTTCGTATAACTCATCTGTCCAAGACAC]
[+] EMBL CD093746 [TCCCGGAAACCGCACGGAGTTGTTCCTGTAACAATTGCATTGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCTTTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCCTGTTTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATCGGCTGGGTACGTATTGGCTAAATTTCCACCAGAAGGATCATATTTTGAAGCACCAAACTTTCTCTATTTTTTCCTGCCCGCTACTTGAGAAGAAACAACACGTTTTTCTTTTTGATATTCCTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGATGTTACGCTCTGGATCGAACTTTTCTNNNAGATGAGGCAATTACGAATCTTCGTATAACTCATCTGTCCAAGACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10750#0 ATTACGTGACCAAATGCACTGAAAACTGATTTCAGTTCATCTGCAGTTGTATCTGGTGGT 60
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 AAATTAGTAACACGTACAGTATTTTCATCGAATGGACGTTTGTCGGTTGACATACTGGAT 120
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CCAGTAGTATTGGCTGCATCACCACGTAATGATGGTGGGATGTAACGTCCAGAACGATCG 180
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TTTTGTAAATCTTTAGTTGTTTCTTCTGTAGGTTCCGTTTTAGCACGAAGTTGTTCCTGT 240
consensus_10750#1 -------------------------------TCCCGGAAACCGCACGGAGTTGTTCCTGT 29
* * ***** ************
consensus_10750#0 AACAATTGCATTGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCT 300
consensus_10750#1 AACAATTGCATTGCTTCCATATCACTTTTGTACGGGCAAGTACGAGTAAAATGTCCACCT 89
************************************************************
consensus_10750#0 TTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCC 360
consensus_10750#1 TTACAATAATTACAAACAATCACAGGTTCTCCAAGTTTTATTTTCACATTCATCTCTTCC 149
************************************************************
consensus_10750#0 TGTTTTTTTT-GCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATC 419
consensus_10750#1 TGTTTTTTTTTGCTCTTGTTCAGGCTGTCTTGATTGAACAATTTGCATGGTAACTACATC 209
********** *************************************************
consensus_10750#0 GGCTGGGTACGTATTGGCTAAATTTCCACCAGAAGGATCAGATTTTGAAGCACCAAACTT 479
consensus_10750#1 GGCTGGGTACGTATTGGCTAAATTTCCACCAGAAGGATCATATTTTGAAGCACCAAACTT 269
**************************************** *******************
consensus_10750#0 TCTCCATTTTTTCCTGTCCGCTACTTGTGAAGCAACAACACGTTTTTCTTTTTGATATTC 539
consensus_10750#1 TCTCTATTTTTTCCTGCCCGCTACTTGAGAAGAAACAACACGTTTTTCTTTTTGATATTC 329
**** *********** ********** **** ***************************
consensus_10750#0 CTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGAT 599
consensus_10750#1 CTTAGTTTCCTTGATCAAATCACCGTCTTCATTGTAGAAATATCGTACGACAGTTTTGAT 389
************************************************************
consensus_10750#0 GTTACGCTCTGGATCGAACTTTTCTTCAATAGGAGGCAATTCCGAATCTTCGTTTAACTC 659
consensus_10750#1 GTTACGCTCTGGATCGAACTTTTCTNNNAGATGAGGCAATTACGAATCTTCGTATAACTC 449
************************* * * ********* *********** ******
consensus_10750#0 ATCTGTCCAAGACACAGTCATGTTGCTCCGTGGAATCA 697
consensus_10750#1 ATCTGTCCAAGACAC----------------------- 464
***************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||