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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1584 fasta sequence
[TTCGCTGGTGCGGTTACCGTGTGCTTTTTGGATAGTCCAGTCAGTATTTATTGTATATCAATTTCTCTTTAACCGATATGGGAAATATCCTGGGGCTCCCGGGTTTGCAACAAACATTGAATACAGTACTTCGTAATGTTGTCAATCAGTTGGTCGTTCTCCCAAATCGTCTACCGGTTCAACTGGTTCCTGACATTGACATACAGCGTTTGAAATATCCATTGCCTCAAGGCGTTCTTCATATCAATATCATATCTGGTCGAAATCTTAAAGCAGGTGATAAAAATGTGATTGGACATAATACATCTGATCCATATTGTGTTATACGAGTTGGTGCTAGGACGTTCACTACTTCTGTTGTTAAAGAAACACTAGAACCAGTTTGGAACCAACATTCTGAGTCAATCGTCGACATTTGTCATGGTCAGTCAGTAACATTTGAAGTATACGATAAAGACCAAGGGAACAAAGATGATTATTTAGGTTGTACTTCGATACCAGTTGAGTCGGTAGTCAGTGAAGGTGAAATAGATACGTGGTCCTCATTAGAAGGGGTAAAAACTGGTTCATTACACATTCAATTAACGTGGTTTCGATTGTCAAATCATGAAGTGGATTTTGCACAGTCAATGGAACAGGCTCTGCAGTATCGTAAAGCGTCCGGACGAAGTATGAGTTCAGGATTTTTATACGTTGTTATTGAACAAGCGAATAATTTGCCACCCGTAAAACAACTACAGGAACCTTCACCATTTTGTAATATCCATCTAGGACGTGATTATCAAACAAACGAAGTTAAAG-AAAAAACACAAAATCCTGTTTGGAACTCTGTGCATCATTTT-CTTGTTAGTGATCCAAACGTTGATATACTTCAGCTTATTATACGTGACAGCCGAACGG-AGACAAAACTAGGATCCTGTAACATCTCACTACAAACCTTATTAACACAGAAGAATATGTCTGTCACGCGACCATTCACC-TTACAAGATACAGGTC-GGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGGGGATGATAATACCAATATAAAACG-CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATT--GGGTCGTATTCGTCTAAC-TATTCAGTTTCATACTCTATCGAACTAT-TTAGAAGTAACAGTACATGAATGTCAACATTT-AAGCGGTGTTGATAAAGACGGTCTATCTGATCCATATGTAAAACTTTATCTTATGGATTTACACGAAAACATGGTCAGTGATTCAAAAAAGACTAAAACTGTTAAAGATAACTTGGACCCAAAGTACGAAGAAAGTTTTTCAGTTTTCCGATTGGAGGCTGACCACCTTCCATTGACCATTC]
[-] EMBL CD115294 [TTCGCTGGTGCGGTTACCGTGTGCTTTTTGGATAGTCCAGTCAGTATTTATTGTATATCAATTTCTCTTTAACCGATATGGGAAATATCCTGGGGCTCCCGGGTTTGCAACAAACATTGAATACAGTACTTCGTAATGTTGTCAATCAGTTGGTCGTTCTCCCAAATCGTCTACCGGTTCAACTGGTTCCTGACATTGACATACAGCGTTTGAAATATCCATTGCCTCAAGGCGTTCTTCATATCAATATCATATCTGGTCGAAATCTTAAAGCAGGTGATAAAAATGTGATTGGACATAATACATCTGATCCATATTGTGTTATACGAGTTGGTGCTAGGACGTTCACTACTTCTGTTGTTAAAGAAACACTAGAACCAGTTTGGAACCAACATTCTGAGTCAATCGTCGACATTTGTCATGGTCAGTCAGTAACATTTGAAGTATACGATAAAGACCAAGGGAACAAAGATGATTATTTAGGTTGTACTTCGATACCAGTTGAGTCGGTAGTCAGTGAAGGTGAAATAGATACGTGGTCCTCATTAGAAGGGGTAAAAACTGGTTCATTACA ]
[-] EMBL CD188112 [ AGCGTTTGAAATATCCATTGCCTCAAGGCGTTCTTCATATCAATATCATATCTGGTCGAAATCTTAAAGCAGGTGATAAAAATGTGATTGGACATAATACATCTGATCCATATTGTGTTATACGAGTTGGTGCTAGGACGTTCACTACTTCTGTTGTTAAAGAAACACTAGAACCAGTTTGGAACCAACATTTTGAGTCAATCGTCGACATTTGTCATGGTCAGTCAGTAACATTTGAAGTATACGATAAAGACCAAGGGAACAAAGATGATTATTTAGGTTGTACTTCGATACCAGTT ]
[+] EMBL CD189233 [ AACATTTGAAGTATACGATAAAGACCAAGGGAACAAAGATGATTATTTAGGTTGTACTTCGATACCAGTTGAGTCGGTAGTCAGAGAAGGTGAAATAGATACGTGGTCCTCATTAGAAGGGGTAAAAACTGGTTCATTACACATTCAATTAACGTGGTTTCGATTGTCAAATCATGAAGTGGATTTTGCACAGTCAATGGAACAGGCTCTGCAGTATCGTAAAGCGTCCGGACGAAGTATGAGTTCAGGATTTTTATACGTTGTTATTGAACAAGCGAATAATTTGCCACCCGTAAAACAACTACAGGAACCTTCACCATTTTGTAATATCCATCTAGGACGTGATTATCAAACAAACGAAGTTAAAGAAAAAAACACANAATCCTGTTTGGAACTCTGTGCATCATTTT CTTGTTAGTGATCCAAACGTTGATATACTTCAGCTTATTATACGTGACAGCCGAACGGNAGAC AAACTAGGATCCTGTAACATCTCACTACAAACCTTATTAACACAGAAGAATATGTCTGTCACGCGACCATTCACCTTTAC AGATACAGGTCGGGGAATCATCAACCATTTACATGCATTTACAATTGTTG ]
[-] EMBL CD189448 [ ACATTTGAAGTATACGATAAAGATCAAGGGAACAAAGATGATTATTTAGGTTGTACTTCGATACCAGTTGAGTCGGTAGTCAGTGAAGGTGAAATAGATACGTGGTCCTCATTAGAAGGGGTAAAAACTGGTTCATTACACATTCAATTAACGTGGTTTCGATTGTCAAATCATGAAGTGGATTTTGTACAGTCAATGGAACAGGCTCTGCAGTATCGTAAAGCGTCCGGACGAAGTATGAGTTCAGGATTTTTATACGTTGTTATTGAACAAGCGAATAATTTGCCACCCGTAAAACAACTACAAGAACCTTCACCATTTTGT ]
[+] EMBL AA559497 [ TTCATTACACATTCAATTAACGTGGTTTCGATTGTCAAATCATGAAGTGGATTTTGCACAGTCAATGGAACAGGCTCTGCAGTATCGTAAAGCGTCCGGACNAAGTATGAGTTCAGGATTTTTATACGTTGTTATTGAACAAGCGAATAATTTGCCACCCGTAAAACAACTACAGGAACCTTCACCATTTTGTAATATCCATCTAGGACGTGATTATCAAACAAACGAAGTTAAAG AAAAAACACAAAATCCTGTTTGGAACTCTGTGCATCATTTTCCTTGTTAGTGATCCAAA ]
[+] EMBL CD178249 [ ATTTTTATACGTTGTTATTGAACAAGCGAATAATTTGCCACCCGTAAAACAACTACAGGAACCTTCACCATTTTGTAATATCCATCTAGGACGTGATTATCAAACAAACCAAGTTAAAG AAAAAACACAAAATCCTGTTTGGAACTCTGTGCATCATTTT CTTGTTAGTGATCCAAACGTTGATATACTTCAGCTTATTATACGTGACAGCCGAACGG AGACAAAACTAGGATCCTGTAACATCTCACTACAAACCTTATTAACACAGAAGAATATGTCTGTCACGCGACCATTCACC TTACAAGATACAGGTC GGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAACGCCAAAATCCAAGTGGGGATGATAATACCAATATAAAACG CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCCACCCCAACTGANAAACCT ]
[+] EMBL CD178221 [ AACGAAGTTAAAG AAAAAACACAAAATCCTGTTTGGAACTCTGTGCATCATTTT CTTGTTAGTGATCCAAACGTTGATATACTTCAGCTTATTATACGTGACAGCCGAACGG AGACAAAACTAGGATCCTGTAACATCTCACTACAAACCTTATTAACACAGAAGAATATGTCTGTCACGCGACCATTCACC TTACAAGATACAGGTC AGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGGGGATGATAATACCAATATAAAACG CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAGAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATT GGGTCGTATTCGTCTAAC TATTCAGTTTCATACTCTATCGAACTAT TTAGAAGTAACAGTACATGAATGTCAACATTT AAGCGGTGTTGATAAAGACGGTCTATCTGATCCATAT ]
[+] EMBL AI975146 [ CTGTTTGGAACTCTGTGCATCATTTT CTTGTTAGTGATCCAAACGTTGATATACTTCAGCTTATTATACGTGACAGCCGAACGG AGACAAAACTAGGATCCTGTAACATCTCACTACAAACCTTATTAACACAGAAGAATATGTCTGTCACGCGACCATTCACC TTACAAGATACAGGTC GGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAACGCCAAAATGCAAGTGGGGATGATAATACCAATATAAAACG CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAGAACCTTCTGAATCCCCTACAGCGAATCCAGAAATGGTTG ]
[+] EMBL BF936553 [ TTATTATACGTGACAGCCGAACGG AGACAAAACTAGGATCCTGTAACATCTCACTACAAACCTTATTAACACAGAAGAATATGTCTGTCACGCGACCATTCACC TTACAAGATACAGGTC GGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAACGCCAAAATCCAAGTGGGGATGATAATACCAATATAAAACG CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATTTGGGGTCGTATTCGTCTAACTTATTCAGTTTCATACTCTATCGAACTAT TTAGAAGTAACAGTACATGAATGTCAACATTTAAAGCGGTGTTGATAAAGACGGTCTATCTGATCCATATGTAAAACTTTATCTTATGGATTTACACGAAAACATGGTCAGTGATTCAAAAAAGACTAAAACTGTTAAAGATAACTTGGACCCAAAGTACGAAGAAAGTTTTTCAGTTTTCCGATTGGAGGCTGACCACCTTCCATTGACCATTC]
[+] EMBL CD166676 [ caCGACCATTCA C TTACAAGATACAGGTC GGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGGGGATGATAATACCAATATAAAACG CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATT GGGTCGTATTCGTCTAAC TATTCAGTTTCATACTCTATCGAACTAT TTAGAAG ]
[-] EMBL CD064252 [ GACCATTCACC TTACAAGATACAGGTC GGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGGGGATGATAATACCAATATAAAACG CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATT GGGTCGTATTCGTCTAAC TATTCAGTTTCATACTCTATCGAACTATGTTAGAAGT ]
[+] EMBL CD064128 [ CATTCACC TTACAAGATACAGGTC GGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGGGGATGATAATACCAATATAAAACG CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGGTGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATT GGGTCGTATTCGTCTAAC TATTCAGTTTCATACTCTATCGAACTAT TTAGAAGTAACAGTA ]
[-] EMBL CD166621 [ TACAGGTC GGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGGGGATGATAATACCAATATAAAACG CAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATT GGGTCGTATTCGTCTAAC TATTCAG ]
[-] EMBL CD062672 [ TACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAACGCCAAAATCCAAGTGGGGATGATAATACCAATATTAAACGCCAGTTTATCCGTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAA AAATCGTTTTCCTGATGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATT GGGTCGTATTCGTCTAAC TATTCAGTTTCATACTCTATCGAACTAT TTAGAAGTAACAGTACATGAATGTCAACATTT AAGCGGTGTTGATAAAGACGGTCTATCTGATCCATATGTAAAACTTTATCTTATGGATTTACACGAAAACATGGTCAGTGATTCAAAAAAGACTAAAACTGTTAAAGATAACTTGGACCCAAAGTACGAAGAAAG TTGTCAGATTCACGAagggtgc ]
consensusID : consensus_10771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 872 fasta sequence
[ATTCGCCGACGAGCATTCTCATTGGGTCGTATTCGTCTAACTATTCAGTTTCATACTCTATCGAACTATTTAGAAGTAACAGTACATGAATGTCAACATTTAAGCGGTGTTGATAAAGACGGTCTATCTGATCCATATGTAAAACTTTATCTTATGGATTTACACGAAAACATGGTCAGTGATTCAAAAAAGACTAAAACTGTTAAAGATAACTTGGATCCAAAGTACGAAGAAAGTTTTCAGTTTCCGATTGAGGCTGACCACCTTCCATTGACCATTCTAAGGCTGGATATCAAAAATCATGTGGGACGTTTTACACGTAGTGGAAAAACGCATTTCATAGGGACTCTGTCGATAAATCTTATTGATTCAGTAGACGGGAAAGCTGAAACTAAGTGGTACGACTTGGCGTCGCCCATTTTTCGTCCATAACTTCGTGTTGTTTTGTTCGAAATACACGCAGCTATTGTCTCTATGTTATTTGGTATCAATTAGTTACTTTCTTAAACTGTCATCTCTATTTCCATGCAATTAGTGTGGTTTATTTGGATTTTTGCTTTTCTGTGTATTTCCCTTTATTAAGAATCATGTATATTTATATTTGCTATAATATCATATTTTTATTAAAAAATAGTTATTAATGCACTCTATTTACAACTCTGAAAGTGTATGAAATTTTATTACATGACCTACGACTCAACGTTCACTTATGCTTATTTGTTTTATGCCGCCATGTGTGTCACACTGTAATTTTCCCTTGGATTCTTTACTTTTTGAGTTGCATTATTTTTTT-ACATCCATGATGATCTAACCGCCATTATTACCGCATCGAAAATTTACCTAACTTGAAAGTTG-TGGCCATTAAGCTAATA]
[+] EMBL CD081657 [ATTCGCCGACGAGCATTCTCATTGGGTCGTATTCGTCTAACTATTCAGTTTCATACTCTATCGAACTATTTAGAAGTAACAGTACATGAATGTCAACATTTAAGCGGTGTTGATAAAGACGGTCTATCTGATCCATATGTAAAACTTTATCTTATGGATTTACACGAAAACATGGTCAGTGATTCAAAAAAGACTAAAACTGTTAAAGATAACTTGGATCCAAAGTACGAAGAAAGTTTTCAGTTTCCGATTGAGGCTGACCACCTTCCATTGACCATTCTAAGGCTGGATATCAAAAATCATGTGGGACGTTTTACACGTAGTGGAAAAACGCATTTCATAGGGACTCTGTCGATAAATCTTATTGATTCAGTAGACGGGAAAGCTGAAACTAAGTGGTACGACTTGGCGTCGCCCATTTTTCGTCCATAACTTCGTGTTGTTTTGTTCGAAATACACGCAGCTATTGTCTCTATGTTATTTGGTATCAATTAGTTACTTTCTTAAACTGTCATCTCTATTTCCATGCAATTAGTGTGGTTTATTTGGATTTTTGCTTTTCTGTGTATTTCCCTTTATTAAGAATCATGTATATTTATATTTGCTATAATATCATATTTTTATTAAAAAATAGTTATTAATGCACTTTATTTACAACTCTGAAAGTGTATGAAATTTTATTACATGACCTACGACTCAACGTTCACTTATGCTTATTTGTTTTATGCCGCCATGTGTGTCACACTGGTATTNTCCCTTGGATTCTTTACTTTNTGAGTTGCATTATTTTTTT ACATCCATGATGATCTAACCGCCATTATTACCGCATCGAAAATTTACCTAACTTGAAAGTTG TGGCCATTAAGCTAt ]
[+] EMBL CD083092 [ CTATTTAGAAGTAACAGTACATGAATGTCAACATTTAAGCGGTGTTGATAAAGACGGTCTATCTGATCCATATGTAAAACTTTATCTTATGGATTTACACGAAAACATGGTCAGTGATTCAAAAAAGACTAAAACTGTTAAAGATAACTTGGATCCAAAGTACGAAGAAAGTTTTCAGTTTCCGATTGAGGCTGACCACCTTCCATTGACCATTCTAAGGCTGGATATCAAAAATCATGTGGTATGTTTTACACGTAGTGGAAAAACGCATTTCATAGGGACTCTGTCGATAAATCTTATTGATTCAGTAGACGGGAAAGCTGAAACTAAGTGGTACGACTTGGCGTCGCCCATTTTTCGTCCATAACTTCGTGTTGTTTTGTTCGAAATACACGCAGCTATTGTCTCTATGTTATTTGGTATCAATTAGTTACTTTCTTAAACTGTCATCTCTATTTCCATGCAATTAGTGTGGTTTATTTGGATTTTTGCTTTTCTGTGTATTTCCCTTTATTAAGAATCATGTATATTTATATTTGCTATAATATCATATTTTTATTAAAAAATAGTTATTAATG ]
[-] EMBL CD076666 [ CGTTTTACACGTAGTGGAAAAACGCATTTCATAGGGACTCTGTCGATAAATCTTATTGATTCAGTAGACGGGAAAGCTGAAACTAAGTGGTACGACTTGGCGTCGCCCATTTTTCGTCCATAACTTCGTGTTGTTTTGTTCGAAATACACGCAGCTATTGTCTCTATGTTATTTGGTATCAATTAGTTACTTTCTTAAACTGTCATCTCTATTTCCATGCAATTAGTGTGGTTTATTTGGATTTTTGCTTTTCTGTGTATTTCCCTTTATTAAGAATCATGTATATTTATATTTGCTATAATATCATATTTTTATTAAAAAATAGTTATTAATGCACTCTATTTACAACTCTGAAAGTGTATGAAATTTTATTACATGACCTACGACTCAACGTTCACTTATGCTTATTTGTTTTATGCCGCCATGTGTGTCACACTGTAATTTTCCCTTGGATTCTTTACTTTTTGAGTTGCATTATTTTTTTCACATCCATGATGATCTAACCGCCATTATTACCGCATCGAAAATTTACCTAACTTGAAAGTTGTTGGCCATTAAGCTAATA]
[-] EMBL CD079855 [ CCCTTTATTAAGAATCATGTATATTTATATTTGCTATAATATCATATTTTTATTAAAAAATAGTTATTAATGCACTCTATTTACAACTCTGAAAGTGTATGAAATTTTATTACATGACCTACGACTCAACGTTCACTTATGCTTATTTGTTTTATGCCGCCATGTGTGTCACACTGTAATTTTCCCTTGGATTCTTTACTTTTTGAGTTGCATTATTTTTTTCACATCCATGATGATCTAACCGCCATTATTACCGCATCGAAAATTTACCTAACTTGAAAGTTGTTGGCCATTAAGCTAATA]
consensusID : consensus_10771#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[ACATTTGAAGTATACGATAAAGATCAAGGGAACAAAGATGATTATNTAGGTTGTACTTCGATACCAGTTGAGTCGGTAGTCAGTGAAGGTGAAATAGATACGTGGTCCTCATTAGAAGGGGTAAAAACTGGTTCATTACACATTCAATTAACGTGGTTTCGATTGTCAAATCATGAAGTGGATTTTGTACAGGTTAGAAAGATATATTCATCATTTGCATAATTTCTTCTGTTAAGTATTGTTCGGTATATAATAACCAGGATTGTATTAGTTGTCCTTTGGTGCTTTTGCTCAAATGATCAAATAAAGGTTGATGATTGATAGGATTTTACTTCAAACACTTCAATTCCTTGTCTTAAATAACATTCAAGTATTGAATAGAAAGTGGGGTTGTATCATTTAGCAAAGTAATCAAAAATTATCAAGTCTTAATCAGCCACTGAAAAACAGAAAGCATTTTTCTTCGTATTTGAGTTGGAATTACTTTGAATACTATTCAAGTCGAAACTCATCTAAAGGTGTTCATCAATTTCCTGTGACATTTCATCAGTGTTCTTTGCAGAACATCTCTATGACTATAAATTAACATACATTCAAGTATTTCTCATGATTTCAGTCAGTATTACA]
[-] EMBL CD189837 [ACATTTGAAGTATACGATAAAGATCAAGGGAACAAAGATGATTATNTAGGTTGTACTTCGATACCAGTTGAGTCGGTAGTCAGTGAAGGTGAAATAGATACGTGGTCCTCATTAGAAGGGGTAAAAACTGGTTCATTACACATTCAATTAACGTGGTTTCGATTGTCAAATCATGAAGTGGATTTTGTACAGGTTAGAAAGATATATTCATCATTTGCATAATTTCTTCTGTTAAGTATTGTTCGGTATATAATAACCAGGATTGTATTAGTTGTCCTTTGGTGCTTTTGCTCAAATGATCAAATAAAGGTTGATGATTGATAGGATTTTACTTCAAACACTTCAATTCCTTGTCTTAAATAACATTCAAGTATTGAATAGAAAGTGGGGTTGTATCATTTAGCAAAGTAATCAAAAATTATCAAGTCTTAATCAGCCACTGAAAAACAGAAAGCATTTTTCTTCGTATTTGAGTTGGAATTACTTTGAATACTATTCAAGTCGAAACTCATCTAAAGGTGTTCATCAATTTCCTGTGACATTTCATCAGTGTTCTTTGCAGAACATCTCTATGACTATAAATTAACATACATTCAAGTATTTCTCATGATTTCAGTCAGTATTACA]
consensusID : consensus_10771#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[ATACAGGTCGGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGGGGATGATAATACCACATATAAAACGCAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATTGGGTCGTATTCGTCTAACTATTCAGTTTCATACTCTATCGAACTATTTAGAAG]
[+] EMBL CD064334 [ATACAGGTCGGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGGGGATGATAATACCACATATAAAACGCAGTTTATCCCTGAATAAGAAATCTACCGATAATTCTACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATAATCTTTATCAACAACAAACTTCAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAATAAGCAATTCATCATTGGGTCGTATTCGTCTAACTATTCAGTTTCATACTCTATCGAACTATTTAGAAG]
consensusID : consensus_10771#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[GGTTACCGTGTGCTTTTTGGATAGTCCATATATCAATTTCTCTTTAACCGATATGGGAAATATCCTGGGGCTCCCGGGTTTGCAACAAACATTGAATACAGTACTTCGTAATGTTGTCAATCAGTTGGTCGTTCTCCCAAATCGTCTACCGGTTCAACTGGTTCCTGACATTGACATACAGCGTTTGAAATATCCATTGCCTCAAGGCGTTCTTCATATCAATATCATATCTGGTCGAAATCTTAAAGCAGGTGATAAAAATGTGATTGGACATAATACATCTGATCCATATTGTGTTATACGAGTTGGTGCTAGGACGTTCACTACTTCTGTTGTT]
[+] EMBL CD059486 [GGTTACCGTGTGCTTTTTGGATAGTCCATATATCAATTTCTCTTTAACCGATATGGGAAATATCCTGGGGCTCCCGGGTTTGCAACAAACATTGAATACAGTACTTCGTAATGTTGTCAATCAGTTGGTCGTTCTCCCAAATCGTCTACCGGTTCAACTGGTTCCTGACATTGACATACAGCGTTTGAAATATCCATTGCCTCAAGGCGTTCTTCATATCAATATCATATCTGGTCGAAATCTTAAAGCAGGTGATAAAAATGTGATTGGACATAATACATCTGATCCATATTGTGTTATACGAGTTGGTGCTAGGACGTTCACTACTTCTGTTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10771#0 ------------------------------------------------------------
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ATTCGCCGACGAGCATTCTCATTGGGTCGTATTCGTCTAACTATTCAGTTTCATACTCTA 60
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 --------------------------------------------------TTCGCTGGTG 10
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ----------------------------------------------------ATACAGGT 8
consensus_10771#1 TCGAACTATTTAGAAGTAACAGTACATGAATGTCAACATTTAAGCGGTGTTGATAAAGAC 120
consensus_10771#2 ---------------------ACATTTGAAGTATACGATAAAGATCAAGGGAACAAAGAT 39
consensus_10771#0 CGGTTACCGTGTGCTTTTTGGATAGTCCAGTCAGTATTTATT-GTATATC---AATTTCT 66
consensus_10771#4 -GGTTACCGTGTGCTTTTTGGATAGTCCA---------------TATATC---AATTTCT 41
consensus_10771#3 CGGGAATCATCAACCATTTACATGCATTTACAATTGTTGGCT-TTACTTCCTGGACAGCG 67
consensus_10771#1 GGTCTATC-TGATCCATATGTAAAACTTTAT--CTTATGGAT-TTACACGAAAACATGGT 176
consensus_10771#2 GATTATNTAGGTTGTACTTCGATACCAGTTGAGTCGGTAGTCAGTGAAGGTGAAATAGAT 99
* * *
consensus_10771#0 CTTTAACCGATATGGGAAATATCCTGGGGCTCCCGGGTT-TGCAACAAACATTGAATACA 125
consensus_10771#4 CTTTAACCGATATGGGAAATATCCTGGGGCTCCCGGGTT-TGCAACAAACATTGAATACA 100
consensus_10771#3 CCAAAATCCAAGTGGGGATGATAATACCACATATAAAAC-GCAGTTTATCCCTGAATAAG 126
consensus_10771#1 CAGTGATTCAAAAAAGACTAAAACTGTTAAAGATAACTT-GGATCCAAAGTACGAAGAAA 235
consensus_10771#2 ACGTGGTCCTCATTAGAAGGG----GTAAAAACTGGTTCATTACACATTCAATTAACGTG 155
* **
consensus_10771#0 GTACT--TCGTAATGTTGTCAATC-AGTTGGTCGTTCTCC--CAAATCGTCTACCGGTTC 180
consensus_10771#4 GTACT--TCGTAATGTTGTCAATC-AGTTGGTCGTTCTCC--CAAATCGTCTACCGGTTC 155
consensus_10771#3 AAATC--TACCGATAATTCTACCCCAACTGAAAAACCTTC--GGAATCCCCTACAG--CG 180
consensus_10771#1 GTTTT--CAGT----TTCCGATTGAGGCTGACCACCTTCCATTGACCATTCTAAGGCTGG 289
consensus_10771#2 GTTTCGATTGTCAAATCATGAAGTGGATTTTGTACAGGTT--AGAAAGATATATTCATCA 213
* * * **
consensus_10771#0 AACTGGTTCCTGACATTGACATACAGCGTTTGAAATATCCATTGCCTCAAGGCGTTCTTC 240
consensus_10771#4 AACTGGTTCCTGACATTGACATACAGCGTTTGAAATATCCATTGCCTCAAGGCGTTCTTC 215
consensus_10771#3 AATCCAGAAATGGTTGTAAGAAATCGTTTTCCTGATGATAATAATCTTTATCAACAACAA 240
consensus_10771#1 ATATCAAAAATCAT-GTGGGACGTTTTACACGTAGTGGAAAAACGCATTTCATAGGGACT 348
consensus_10771#2 TTTGCATAATTTCTTCTGTTAAGTATTGTTCGGTATA-TAATAACCAGGAT-TGTATTAG 271
* * * * * *
consensus_10771#0 ATATCAATAT-CATATCTGGTCGAAATCTTAAAGCAGGTGATAAAAA----TGTGATTGG 295
consensus_10771#4 ATATCAATAT-CATATCTGGTCGAAATCTTAAAGCAGGTGATAAAAA----TGTGATTGG 270
consensus_10771#3 ACTTCAATAA-TCAGTCTGCTCAGGCAGTTAGA-CAAGTGATGACAA-----GTAATAGT 293
consensus_10771#1 CTGTCGATAAATCTTATTGATTCAGTAGACGGGAAAGCTGAAACTAAGTGGTACGACTTG 408
consensus_10771#2 TTGTCCTTTGGTGCTTTTGCTCAAATGATCAAATAAAG-GTTGATGATTGATAGGATTTT 330
** * ** * * * * *
consensus_10771#0 ACATAATACATCTG--ATCCAT-ATT---GTGTTATACGAGTTGGTGCTAGGACGTTCAC 349
consensus_10771#4 ACATAATACATCTG--ATCCAT-ATT---GTGTTATACGAGTTGGTGCTAGGACGTTCAC 324
consensus_10771#3 ATACAACAAATAAGCAATTCATCATT---GGGTCGTATTCGTCTA-ACTATTCAGTTTCA 349
consensus_10771#1 GCGTCGCCCATTTTTCGTCCATAACTTC-GTGTTGTTTTGTTCGAAATACACGCAGCTAT 467
consensus_10771#2 ACTTCAAACACTTCAATTCCTTGTCTTAAATAACATTCAAGTATTGAATAGAAAGTGGGG 390
* * * * * * *
consensus_10771#0 TACTTCTGTTGTTAAAGAAACACTAGAACCAGTTTGGAACCAACATTCTGAGTCAATCGT 409
consensus_10771#4 TACTTCTGTTGTT----------------------------------------------- 337
consensus_10771#3 TACT-CTATCGAACTATTTAGAAG------------------------------------ 372
consensus_10771#1 TGTCTCTATGTTATTTGGTATCAATTAGTTACTTTCTTAAACTGTCATCTCTATTTCCAT 527
consensus_10771#2 TTGTATCATTTAGCAAAGTAATCAAAAATTATCAAGTCTTAATCAGCCACTGAAAAACAG 450
* *
consensus_10771#0 CGACATTTGTCATGGTCAGTCAGTAACATTTGAAGTATACGATAAAGACCAAGGGAACAA 469
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 GCAATTAGTGTGGTTTATTTGGATTTTTGCTTTTCTGTGTATTTCCCTTTATTAAGAATC 587
consensus_10771#2 AAAGCATTTTTCTTCGTATTTGAGTTGGAATTACTTTGAATACTATTCAAGTCGAAACTC 510
consensus_10771#0 AGATGATTATTTAGGTTGTACTTCGATACCAGTTGAGTCGGTAGTCAGTGAAGGTGAAAT 529
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ATGTATATTTATATTTGCTATAATATCATATTTTTATTAAAAAATAGTTATTAATGCACT 647
consensus_10771#2 ATCTAAAGGTGTTCAT-CAATTTCCTGTGACATTTCATCAGTGTTCTTTGCAGAACATCT 569
consensus_10771#0 AGATACGTGGTCCTCATTAGAAGGGGTAAAAACTGGTTCATTACACATTCAATTAACGTG 589
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 CTATTTACAACTCTGAAAGTGTATGAAATTTTATTACATGACCTACGACTCAACGTTCAC 707
consensus_10771#2 CTATGACTATAAATTAACATACATTCAAGTATTTCTCATGATTTCAGTCAGTATTACA-- 627
consensus_10771#0 GTTTCGATTGTCAAATCATGAAGTGGATTTTGCACAGTCAATGGAACAGGCTCTGCAGTA 649
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 TTATGCTTATTTGTTTTATGCCGCCATGTGTGTCACACTGTAATTTTCCCTTGGATTCTT 767
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 TCGTAAAGCGTCCGGACGAAGTATGAGTTCAGGATTTTTATACGTTGTTATTGAACAAGC 709
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 TACTTTTTGAGTTGCATTATTTTTTTACATCCATGATGATCTAACCGCCATTATTACCGC 827
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 GAATAATTTGCCACCCGTAAAACAACTACAGGAACCTTCACCATTTTGTAATATCCATCT 769
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ATCGAAAATTTACCTAACTTGAAAGTTGTGGCCATTAAGCTAATA--------------- 872
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 AGGACGTGATTATCAAACAAACGAAGTTAAAGAAAAAACACAAAATCCTGTTTGGAACTC 829
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 TGTGCATCATTTTCTTGTTAGTGATCCAAACGTTGATATACTTCAGCTTATTATACGTGA 889
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 CAGCCGAACGGAGACAAAACTAGGATCCTGTAACATCTCACTACAAACCTTATTAACACA 949
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 GAAGAATATGTCTGTCACGCGACCATTCACCTTACAAGATACAGGTCGGGAATCATCAAC 1009
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 CATTTACATGCATTTACAATTGTTGGCTTTACTTCCTGGACAGCGCCAAAATCCAAGTGG 1069
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 GGATGATAATACCAATATAAAACGCAGTTTATCCCTGAATAAGAAATCTACCGATAATTC 1129
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 TACCCCAACTGAAAAACCTTCGGAATCCCCTACAGCGAATCCAGAAATGGTTGTAAGAAA 1189
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 TCGTTTTCCTGATGATAATGATATTATTTCTTCTACAGAATCTTTATCAACAACAAACTT 1249
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 CAATAATCAGTCTGCTCAGGCAGTTAGACAAGTGATGACAAGTAATAGTATACAACAAAT 1309
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 AAGCAATTCATCATTGGGTCGTATTCGTCTAACTATTCAGTTTCATACTCTATCGAACTA 1369
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 TTTAGAAGTAACAGTACATGAATGTCAACATTTAAGCGGTGTTGATAAAGACGGTCTATC 1429
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 TGATCCATATGTAAAACTTTATCTTATGGATTTACACGAAAACATGGTCAGTGATTCAAA 1489
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 AAAGACTAAAACTGTTAAAGATAACTTGGACCCAAAGTACGAAGAAAGTTTTTCAGTTTT 1549
consensus_10771#4 ------------------------------------------------------------
consensus_10771#3 ------------------------------------------------------------
consensus_10771#1 ------------------------------------------------------------
consensus_10771#2 ------------------------------------------------------------
consensus_10771#0 CCGATTGGAGGCTGACCACCTTCCATTGACCATTC 1584
consensus_10771#4 -----------------------------------
consensus_10771#3 -----------------------------------
consensus_10771#1 -----------------------------------
consensus_10771#2 -----------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||