These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1003 fasta sequence [GAAAGAAGATA-TTGATGA-AATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCAAGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC-GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT-ATG-ACAAAGTTCAATCA-TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC-GTGG-AGTCCCAC-AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG-AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTATCCCCTGTATAATACTCCAATGTGTCTTCACCTCCATTTTCGTTTGTTTGACAAAAGATATATGCTTGTTTTTCGAGTCTA] [+] EMBL CD069421 [GAAAGAAGATA TTGATGA AATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCAAGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACCATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATT ] [+] EMBL CD069555 [GAAAGAAGATA TTGATGA AATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGCTCAAGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATT ] [+] EMBL CD069564 [ agAGATA TTGATGA AATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCAAGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTCATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATT ] [+] EMBL CD069610 [ AGATACTTGATGACAATTA TC A T GTGGTTCTACTCAAATCCCTAAGGTTC AGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAACTACAGTTATTCCAACGAAGAAGTCGGCAGATATTTTCTACAGCTGCCGACAAACAGACGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTAATGAACAAAGTTCAATCATTTTCCTTGGCAAG TTGACCTGACAGGTA TCCTCCGGCACTTC GTGGAAGTCCCACAAAATTGAGGTGACCTTCGAGATT ] [-] EMBL CD191569 [ CCCATGGACTTTGGGTATTGAAACGTTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGC TAGATGCAG ] [+] EMBL CD190624 [ ACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAG ] [+] EMBL CD201959 [ TTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTAAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGNGGAAAAACTTAGTGCTGACGACAAGAAGAAAATC ] [+] EMBL CD126593 [ ATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCGAAAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGA ] [+] EMBL CD071193 [ GGTATTTGATGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG ATTCCCAC AAATTGATGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCACAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAATAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCATATTGCAGACTAGGGTCAACTTGGGGAAAAACTTATTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATT ] [-] EMBL CD152207 [ ACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATCCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAA ] [+] EMBL CD063830 [ TATTCCTCCGGCACTTCGGTGG AGTCCCAC AAATAGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGA ] [-] EMBL CD063416 [ TAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCAC ] [-] EMBL CD200361 [ GGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGNCCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGT ] [-] EMBL CD185959 [ GATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAGACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCCATAATTTCCTCATTATATCAGCAATCAGGAGCTC ] [+] EMBL CD142773 [ TTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTA ] [+] EMBL CD142626 [ TTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTA ] [-] EMBL AI068263 [ TCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTATCCCCTGTATAATACTCCAATGTGTCTTCACCTCCATTTTCGTTTGTTTGACAAAAGATATATGCTTGTTTTTCGAGTCTA] [-] EMBL BG932368 [ CTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCctc ] [-] EMBL CD181244 [ TTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAAC ] [-] EMBL AI067839 [ TTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTATCCCCTGTATAATACTCCAATGTGTCTTCACCTCCATTTTCGTTTGTTTGACAAAAGATATATGCTTGTTTTTCGAGTCTA] consensusID : consensus_10776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [ATGTATGGTTGATATATATCATCGTACTAATCCCAAGTGTGGTTACTTATGTTGATATACATTTGTAGTAAGTTGTGTATTGTTCATAGTCTACCGATTGAAAACATCAAAACTAGTTACTTACTTACTTACGCCTGTTACCCTCTCCATCCAACTTTGTCCTGGACAATCCTTCCCAGTTGTTATTTATCCTCTTCATGTTTGATTCCAATTCTCTGTGCAGTGTGTTTTTTTAGTCTTCCTATTTTCCGTTTCGCTTCAGCATTGCAAGTTAGCGCTTGATAATCTCATTGTATGTCCTATTCACTTCCAACGTCTTTTCCTAATTTCCTCTTCAGATGGAAGCTGGTTTGTTCTCTTCCTCAGTAGGCTGTTACTGATAGCATCCAGCCGACGGACATTGAGTAT] [+] EMBL CD162715 [ATGTATGGTTGATATATATCATCGTACTAATCCCAAGTGTGGTTACTTATGTTGATATACATTTGTAGTAAGTTGTGTATTGTTCATAGTCTACCGATTGAAAACATCAAAACTAGTTACTTACTTACTTACGCCTGTTACCCTCTCCATCCAACTTTGTCCTGGACAATCCTTCCCAGTTGTTATTTATCCTCTTCATGTTTGATTCCAATTCTCTGTGCAGTGTGTTTTTTTAGTCTTCCTATTTTCCGTTTCGCTTCAGCATTGCAAGTTAGCGCTTGATAATCTCATTGTATGTCCTATTCACTTCCAACGTCTTTTCCTAATTTCCTCTTCAGATGGAAGCTGGTTTGTTCTCTTCCTCAGTAGGCTGTTACTGATAGCATCCAGCCGACGGACATTGAGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10776#0 GAAAGAAGATATTGATGAAATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCA 60 consensus_10776#1 ------------------------------------------------------------ consensus_10776#0 AGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGC 120 consensus_10776#1 ---------------------------------------------------ATGTATGGT 9 * * * consensus_10776#0 AGTTGCATACGGT-GCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAG 179 consensus_10776#1 TGATATATATCATCGTACTAATCCCAAGTGTGGTTACTTATGTT--GATATACATTTGTA 67 * * *** * * * * * *** **** * ** * * *** * * consensus_10776#0 GCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCA 239 consensus_10776#1 GTAAGTTGTGTATTGTTCATAGTCTACCGATTGAAAACATCAAAAC--TAGTTACTTACT 125 * ** * * * * * * * ** * ** **** * * * * * consensus_10776#0 TGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTA 299 consensus_10776#1 TACTTACGCCTGTT-------ACCCTCTCCATCCAACTTTGTCCTGGACAATCCTTCC-- 176 * * * * ** * * * ****** * * * ** ** * consensus_10776#0 CAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGA 359 consensus_10776#1 CAGTTGTTATTTATCCTCTTCATGTTTGATTCCAATTCTCTGTGC---AGTGTGTTTTTT 233 *** ** * * * *** * * ** * * ** * * * * * * consensus_10776#0 CAAAGTTCAATCATTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTCGTG 419 consensus_10776#1 TAGTCTTC--CTATTTTCCGTTTCGCTTCAGCATTGCAAGT-------TAGCGCTTGAT- 283 * *** **** * ** * * ** ** ** *** * consensus_10776#0 GAGTCCCACAAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCG 479 consensus_10776#1 -AATCTCA----------TTGTATGTCCTATTCACTTCCAACGTCTTTTCCTAATTTCCT 332 * ** ** * ** * *** ** ** * * * * * ***** consensus_10776#0 CAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCT 539 consensus_10776#1 CTTCAGATGGAAGC-----TGGTTTGTTCTCTTCCTCAGTAGGCTGTTACTGATAGCATC 387 * **** * * * ** * * * * ** * * * consensus_10776#0 TAGATGCAGAAGAAATCGAAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATA 599 consensus_10776#1 CAGCCG--ACGGACATTGAGTAT------------------------------------- 408 ** * ** ** ** * consensus_10776#0 AGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAA 659 consensus_10776#1 ------------------------------------------------------------ consensus_10776#0 AATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGA 719 consensus_10776#1 ------------------------------------------------------------ consensus_10776#0 AAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGG 779 consensus_10776#1 ------------------------------------------------------------ consensus_10776#0 TTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCT 839 consensus_10776#1 ------------------------------------------------------------ consensus_10776#0 CATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAAC 899 consensus_10776#1 ------------------------------------------------------------ consensus_10776#0 TGTAAATGTTCGGCTTTGTTGTATCCCCTGTATAATACTCCAATGTGTCTTCACCTCCAT 959 consensus_10776#1 ------------------------------------------------------------ consensus_10776#0 TTTCGTTTGTTTGACAAAAGATATATGCTTGTTTTTCGAGTCTA 1003 consensus_10776#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||