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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1003 fasta sequence
[GAAAGAAGATA-TTGATGA-AATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCAAGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC-GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT-ATG-ACAAAGTTCAATCA-TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC-GTGG-AGTCCCAC-AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG-AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTATCCCCTGTATAATACTCCAATGTGTCTTCACCTCCATTTTCGTTTGTTTGACAAAAGATATATGCTTGTTTTTCGAGTCTA]
[+] EMBL CD069421 [GAAAGAAGATA TTGATGA AATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCAAGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACCATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATT ]
[+] EMBL CD069555 [GAAAGAAGATA TTGATGA AATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGCTCAAGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATT ]
[+] EMBL CD069564 [ agAGATA TTGATGA AATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCAAGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTCATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATT ]
[+] EMBL CD069610 [ AGATACTTGATGACAATTA TC A T GTGGTTCTACTCAAATCCCTAAGGTTC AGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAACTACAGTTATTCCAACGAAGAAGTCGGCAGATATTTTCTACAGCTGCCGACAAACAGACGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTAATGAACAAAGTTCAATCATTTTCCTTGGCAAG TTGACCTGACAGGTA TCCTCCGGCACTTC GTGGAAGTCCCACAAAATTGAGGTGACCTTCGAGATT ]
[-] EMBL CD191569 [ CCCATGGACTTTGGGTATTGAAACGTTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGC TAGATGCAG ]
[+] EMBL CD190624 [ ACAGTTATTCCAACGAAGAAGTC GCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAG ]
[+] EMBL CD201959 [ TTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTAAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGNGGAAAAACTTAGTGCTGACGACAAGAAGAAAATC ]
[+] EMBL CD126593 [ ATACAGGTATTTGAGGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCGAAAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGA ]
[+] EMBL CD071193 [ GGTATTTGATGGTGAACGAGCT ATG ACAAAGTTCAATCA TTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTC GTGG ATTCCCAC AAATTGATGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCACAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAATAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCATATTGCAGACTAGGGTCAACTTGGGGAAAAACTTATTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATT ]
[-] EMBL CD152207 [ ACAGGTATTCCTCCGGCACTTC GTGG AGTCCCAC AAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATCCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAA ]
[+] EMBL CD063830 [ TATTCCTCCGGCACTTCGGTGG AGTCCCAC AAATAGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGA ]
[-] EMBL CD063416 [ TAGAGTTTCCGCAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCAC ]
[-] EMBL CD200361 [ GGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGNCCAACATCGCTTAGATGCAGAAGAAATCG AAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATAAGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGT ]
[-] EMBL CD185959 [ GATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAGACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCCATAATTTCCTCATTATATCAGCAATCAGGAGCTC ]
[+] EMBL CD142773 [ TTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTA ]
[+] EMBL CD142626 [ TTCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTA ]
[-] EMBL AI068263 [ TCTGCTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTATCCCCTGTATAATACTCCAATGTGTCTTCACCTCCATTTTCGTTTGTTTGACAAAAGATATATGCTTGTTTTTCGAGTCTA]
[-] EMBL BG932368 [ CTTATACTCTAAAATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGAAAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGGTTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCctc ]
[-] EMBL CD181244 [ TTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAAC ]
[-] EMBL AI067839 [ TTGTCCAACCTATAATTTCCTCATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAACTGTAAATGTTCGGCTTTGTTGTATCCCCTGTATAATACTCCAATGTGTCTTCACCTCCATTTTCGTTTGTTTGACAAAAGATATATGCTTGTTTTTCGAGTCTA]
consensusID : consensus_10776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[ATGTATGGTTGATATATATCATCGTACTAATCCCAAGTGTGGTTACTTATGTTGATATACATTTGTAGTAAGTTGTGTATTGTTCATAGTCTACCGATTGAAAACATCAAAACTAGTTACTTACTTACTTACGCCTGTTACCCTCTCCATCCAACTTTGTCCTGGACAATCCTTCCCAGTTGTTATTTATCCTCTTCATGTTTGATTCCAATTCTCTGTGCAGTGTGTTTTTTTAGTCTTCCTATTTTCCGTTTCGCTTCAGCATTGCAAGTTAGCGCTTGATAATCTCATTGTATGTCCTATTCACTTCCAACGTCTTTTCCTAATTTCCTCTTCAGATGGAAGCTGGTTTGTTCTCTTCCTCAGTAGGCTGTTACTGATAGCATCCAGCCGACGGACATTGAGTAT]
[+] EMBL CD162715 [ATGTATGGTTGATATATATCATCGTACTAATCCCAAGTGTGGTTACTTATGTTGATATACATTTGTAGTAAGTTGTGTATTGTTCATAGTCTACCGATTGAAAACATCAAAACTAGTTACTTACTTACTTACGCCTGTTACCCTCTCCATCCAACTTTGTCCTGGACAATCCTTCCCAGTTGTTATTTATCCTCTTCATGTTTGATTCCAATTCTCTGTGCAGTGTGTTTTTTTAGTCTTCCTATTTTCCGTTTCGCTTCAGCATTGCAAGTTAGCGCTTGATAATCTCATTGTATGTCCTATTCACTTCCAACGTCTTTTCCTAATTTCCTCTTCAGATGGAAGCTGGTTTGTTCTCTTCCTCAGTAGGCTGTTACTGATAGCATCCAGCCGACGGACATTGAGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10776#0 GAAAGAAGATATTGATGAAATTATTCTAGTTGGTGGTTCTACTCAAATCCCTAAGGTTCA 60
consensus_10776#1 ------------------------------------------------------------
consensus_10776#0 AGAACTTCTACGAAGTTTCTTCGAAAAAGAACTTAACACAGGAGTTAATCCAGATGAAGC 120
consensus_10776#1 ---------------------------------------------------ATGTATGGT 9
* * *
consensus_10776#0 AGTTGCATACGGT-GCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAG 179
consensus_10776#1 TGATATATATCATCGTACTAATCCCAAGTGTGGTTACTTATGTT--GATATACATTTGTA 67
* * *** * * * * * *** **** * ** * * *** * *
consensus_10776#0 GCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCA 239
consensus_10776#1 GTAAGTTGTGTATTGTTCATAGTCTACCGATTGAAAACATCAAAAC--TAGTTACTTACT 125
* ** * * * * * * * ** * ** **** * * * * *
consensus_10776#0 TGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTA 299
consensus_10776#1 TACTTACGCCTGTT-------ACCCTCTCCATCCAACTTTGTCCTGGACAATCCTTCC-- 176
* * * * ** * * * ****** * * * ** ** *
consensus_10776#0 CAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGA 359
consensus_10776#1 CAGTTGTTATTTATCCTCTTCATGTTTGATTCCAATTCTCTGTGC---AGTGTGTTTTTT 233
*** ** * * * *** * * ** * * ** * * * * * *
consensus_10776#0 CAAAGTTCAATCATTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTTCGTG 419
consensus_10776#1 TAGTCTTC--CTATTTTCCGTTTCGCTTCAGCATTGCAAGT-------TAGCGCTTGAT- 283
* *** **** * ** * * ** ** ** *** *
consensus_10776#0 GAGTCCCACAAATTGAGGTGACATTTGAGATTGACGTCAACGGCATACTTAGAGTTTCCG 479
consensus_10776#1 -AATCTCA----------TTGTATGTCCTATTCACTTCCAACGTCTTTTCCTAATTTCCT 332
* ** ** * ** * *** ** ** * * * * * *****
consensus_10776#0 CAGAAGATAAAGGGACCGGTAGTAAAAACAAAATAGAAATCAACAAAGACCAACATCGCT 539
consensus_10776#1 CTTCAGATGGAAGC-----TGGTTTGTTCTCTTCCTCAGTAGGCTGTTACTGATAGCATC 387
* **** * * * ** * * * * ** * * *
consensus_10776#0 TAGATGCAGAAGAAATCGAAAAAATGATTAATGATGCAGAACAGTTTGCAGCTTCAGATA 599
consensus_10776#1 CAGCCG--ACGGACATTGAGTAT------------------------------------- 408
** * ** ** ** *
consensus_10776#0 AGAAGTTAAAGGAGCGTGTTGATGCCAGAAACGAATTCGAAAGTTCTGCTTATACTCTAA 659
consensus_10776#1 ------------------------------------------------------------
consensus_10776#0 AATCTCAGATTGCAGACAAGGGTCAACTTGGGGAAAAACTTAGTGCTGACGACAAGAAGA 719
consensus_10776#1 ------------------------------------------------------------
consensus_10776#0 AAATCGAGAAAGCTATTGAGGAGGCTATTTCATATTTAGACGGTAATCCACAAGCTGAGG 779
consensus_10776#1 ------------------------------------------------------------
consensus_10776#0 TTGAAGAATTAAAACAGAAAAAGAAAGCTTTCGACGACATTGTCCAACCTATAATTTCCT 839
consensus_10776#1 ------------------------------------------------------------
consensus_10776#0 CATTATATCAGCAATCAGGAGCTCCTCCCCCAGCCCAGCCTGAAACGGAAAGAGATGAAC 899
consensus_10776#1 ------------------------------------------------------------
consensus_10776#0 TGTAAATGTTCGGCTTTGTTGTATCCCCTGTATAATACTCCAATGTGTCTTCACCTCCAT 959
consensus_10776#1 ------------------------------------------------------------
consensus_10776#0 TTTCGTTTGTTTGACAAAAGATATATGCTTGTTTTTCGAGTCTA 1003
consensus_10776#1 --------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||