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Schistosoma mansoni
cluster # 10778 cluster # 10778       Sequences # 22       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10778#0 length = 1575 sequences # 16  
consensus_10778#1 length = 336 sequences # 1  
consensus_10778#2 length = 323 sequences # 3  
consensus_10778#3 length = 240 sequences # 2  

consensusID : consensus_10778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 1575
fasta sequence
                              [ACAGGANCAGATTCAACCACTTCATCTATCATTTCAGATTCAGAAAATTCATCATCAGCACTAAGTTCAGGACTTTTTTCCAAAGTAGTATCCAGGCACGACGCATCTATACGATGTGAAGAAAATACTTCGATTTCAGAAACAGAATTCTTTAGACCAGTGGTATTGGAAGTAATCCTCTCCTCTGTGGGAATAGTGAGAGTAGTTCCAAGAGGTAAACAGAAGTAAACTAAACGATTTACAACATCTTCAGCAGTTTCTGACAAAAATTTATAATCGGACAATGGTAGTGTAGGACAAGCAGGAAGTCGAACTAATACCC-GTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCACTGGTAATGTGTA-GCTCTTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGATCATTCCGTAATGCCTCGAGTAAGTCACCAACACTTGAATTAGCTGGTAAAAAAGCTATTCCAGGAATTCGACCATTGATTAACAAGCGATTAATGGGGACGAAACTACCTGAAGAATCATTAGTGTCATTTCCATTATTCATATTTGTGTCCGAACTAGTACCGGATTCAAGTGACGATGACGAACTTGCACGCTGCCATTGAGGAAACTGTGGTCCGAAAATTACTATATCAAGTGGGGTAAAAGCTGGACTAACGGACCCCTTGGCAACTGCATATTTCTTACTCCCCGCCGAAGTAACCAAAGAGTGATCTACATCAAGAGGTAAATCATAACGCTTTGACTTGGACGATTTTTTGTTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAG-AAAAAT-CATATCCTTTAGTAATTTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTC-GGTAACCAAGGATTGAA-GGTAAGGTTCGACGGCAG-CCTGAAGCTGATACAAGATTTTCTC-TTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAA-TTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTA-TTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCCGCGATATATGAGAAAGGATTTTTTGAATGTGATTAGTATGACTGTTGAATTCGCCATGAGGGACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCAAGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCCTGGGAACCAAACCGTCCGCCTATTATCACTCCACAACGGAACTCATCTACAGAGATCAAACGATCTGCAAAACTATTGTCAAACAAAACCTCCGCAATCATCCTTGGGGCAACGCTTCAGTGATATCGTCCGCTGATGGAGGTTACTGAGCACT]

[-] EMBL CD095828             [ACAGGANCAGATTCAACCACTTCATCTATCATTTCAGATTCAGAAAATTCATCATCAGCACTAAGTTCAGGACTTTTTTCCAAAGTAGTATCCAGGCACGACGCATCTATACGATGTGAAGAAAATACTTCGATTTCAGAAACAGAATTCTTTAGACCAGTGGTATTGGAAGTAATCCTCTCCTCTGTGGGAATAGTGAGAGTAGTTCCAAGAGGTAAACAGAAGTAAACTAAACGATTTACAACATCTTCAGCAGTTTCTGACAAAAATTTATAATCGGACAATGGTAGTGTAGGACAAGCAGGAAGTCGAACTAATACCC GTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCACTGGTAATGTGTA GCTCCTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGATCATTCCGTAATGCCTCGAGTAAGTCACCAACACTTGAATTAGCTGGTAAAAAAGCTATTCCAGGAATTCGACCATTGATTAACAAGCGATTAATGGGGACGAAACTACCTGAAGAATCATTAGAGTCATTTCCATTATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BG932387             [                                                                                                                                                               GTGGTATTGGAAGTAATCCTCTCCTCTGTGGGAATAGTGAGAGTAGTTCCAAGAGGTAAACAGAAGTAAACTAAACGATTTACAACATCTTCAGCAGTTTCTGACAAAAATTTATAATCGGACAATGGTAGTGTAGGACAAGCAGGAAGTCGAACTAATACCC GTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCACTGGTAATGTGTA GCTCTTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGATCATTCCGTAATGCCTCGAGTAAGTCACCAACACTTGAATTAGCTGGTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BG932577             [                                                                                                                                                               GTGGTATTGGAAGTAATCCTCTCCTCTGTGGGAATAGTGAGAGTAGTTCCAAGAGGTAAACAGAAGTAAACTAAACGATTTACAACATCTTCAGCAGTTTCTGACAAAAATTTATAATCGGACAATGGTAGCGTAGGACAAGCAGGAAGTCGAACTAATACCC GTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCACTGGTAATGTGTA GCTCTTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGATCATTCCGTAATGCCTCGAGTAAGTCACCAACACTTGAATTTGCTGGTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD114170             [                                                                                                                                                                                                                                                                                                          AAGCAGGAAGTCGAACTAATACCC GTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCACTGGTAATGTGTA GCTCTTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGATCATTCCGTAATGCCTCGAGTAAGTCACCAACACTTAAATTAGCTGGTAAAAAAGCTATTCCAGGAATTCGACCATTGATTAACAAGCGATTAATGGGGACGAAACTACCTGAAGAATCATTAGTGTCATTTCCATTATTCATATTTGTGTCCGAACTAGTACCGGATTCAAGTGACGATGACGAACTTGCACGCTGCCATTGAGGAAACTGTGGTCCGAAAATTACTATATCAAGTGGGGTAAAAGCTGGACTAACGGACCCCTTGGCAACTGCATATTTCTTACTCCCCGCCGAAGTAACCAAAGAGTGATCTACATCAAGAGGTAAATCATAACGCTTTGACTTGGACGATTTTTTGTTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAG AAAAAT CATATCCTTTAGTAATTTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTCGGGGTACCAA GATTGAANGGTAA GTTCGACGGCAGNCCTG AGCTGATACAAGATTTCCTC TTTTTTTCGATCAGATGGGTAGTGGGTCTCCAAAGAAAGTAGTATACGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD068118             [                                                                                                                                                                                                                                                                                                          AAGCA GAAGTCGAACTAATACCCGGTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCACTGGTAATGTGTATGCTCTTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGATCATTCCGTAATGCCTCGAGTAAGTCACCAAGACTTGAATTAGCTGGTAAAAAAGCTATTCCAGGAATTCGACCATTGATTAACAAGCGATTAATGGGGACGAAACTACCTGAAGAATCATTAGTGTCATTTCCATTATTCATATTCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD066779             [                                                                                                                                                                                                                                                                                                                  AGTCGAACTAATACCC GTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCACTGGTAATGTGTA GCTCTTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGATCATTCCGTAATGCCTCGAGTAAGTCACCAACACTTGAATTAGCTGGTAAAAAAGCTATTCCAGGAATTCGACCATTGATTAACAAGCGATTAATGGGGACGAAACTACCTGAAGAGTCATTAGTGTCATTTCCATTATTCATATTTGTGTCCGAACTAGTACCGGATTCAAGTGACGATGACGAACTTGCACGCTGCCATTGAGGAAACTGTGGTCCGAAAATTACTATATCAAGTGGGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD200857             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCTTTGGCAACTGCATATTTCTTACTCCCCGCCGAAGTAACCAAAGAGTGATCTACATCAAGAGGTAAATCATAACGCTTTGACTTGGACAATTTTTTGTTCTTTTTGCTTTGGATTTCGCCATCGGGGGGTACAGAAAAAATCCATATCCTTTAGTAATTTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTC GGTAACCAAGGATTGAA GGTAAGGTTCGACGGCAG TCTGAAGCTGATACAAGATTTTCTC TTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGCATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACCTCCACTGTTCGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD195807             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCTTTGACTTGGACGATTTTTTGTTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAG AAAAATCCATATCCTTTAGTAATTTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTC GGTAACCAAGGATTGAA GGTAAGGTTCGACGGCAG CCTGAAGCTGATACAAGATTTTCTC TTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD091067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTC GGTAACCAAGGATTGAA GGTAAGGTTCGACGGCAG CCTGAAGCTGATACAAGATTTTCTCTTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAA TTTTTTTGTTTTGGGGTCAGCTACCAGCACCAATTTCTCTGTATTTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCCGCGATATATGAGAAAGGATTTTTTGAATGTGATTAGTATGACTGTTGAATTCGCCATGAGGGACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCAAGATTTCTAC                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD091058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTC GGTAACCAAGGATTGAA GGTAAGGTTCGACGGCAG CCTGAAGCTGATACAAGATTTTCTCTTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAA TTTTTTTGTTTTGGGGTCAGCTACCAGCACCAATTTCTCTGTATTTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCCGCGATATATGAGAAAGGATTTTTTGAATGTGATTAGTATGACTGTTGAATTCGCCATGAGGGACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGC                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD091066             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTC GGTAACCAAGGATTGAA GGTAAGGTTCGACGGCAG CCTGAAGCTGATACAAGATTTTCTC TTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAA TTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTATTTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCCGCGATATATGAGAAAGGATTTTTTGAATGTGATTAGTATGACTGTTGAATTCGCCATGAGGGACAGTCAAACAAATCCGACTTATATGAACA                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD067008             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAATTTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTA TTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCCGCGATATATGAGAAAGGATTTTTTGAACGTGATTAGTATGACTGTTGAATTCGCCATGAGGGACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCAAGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAG                                                                                                                                                                      ]
[-] EMBL CD066309             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTA TTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCCGCGATATATGAGAAAGGATTTTTTGAATGTGATTAGTATGACTGTTGAATTCGCCATGAGGGACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCAAGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAG                                                                                                                                                                      ]
[+] EMBL CD157070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTA TTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCCGCGATATATGAGAAAGGATTTTTTGAATGTGATTAGTATGACTGTTGAATTCGCCATGAGGGACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCAAGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCCTGGGAACCAAACCGTCCGCCTATTATCACTCCACAACGGAACTCATCTACAGAGATCAAACGATCTGCAAAACTATTGTCAAACAAAACCTCCGCAATC                                                       ]
[+] EMBL BG930296             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ttAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCAAGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCCTGGGA                                                                                                                                                     ]
[-] EMBL CD144427             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCTCCTGGAATCATTCGCGCAAGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCCTGGGAACCAAACCGTCCGCCTATTATCACTCCACAACGGAACTCATCTACAGAGATCAAACGATCTGCAAAACTATTGTCAAACAAAACCTCCGCAATCATCCTTGGGGCAACGCTTCAGTGATATCGTCCGCTGATGGAGGTTACTGAGCACT]


>consensus_10778#0 ACAGGANCAGATTCAACCACTTCATCTATCATTTCAGATTCAGAAAATTCATCATCAGCA CTAAGTTCAGGACTTTTTTCCAAAGTAGTATCCAGGCACGACGCATCTATACGATGTGAA GAAAATACTTCGATTTCAGAAACAGAATTCTTTAGACCAGTGGTATTGGAAGTAATCCTC TCCTCTGTGGGAATAGTGAGAGTAGTTCCAAGAGGTAAACAGAAGTAAACTAAACGATTT ACAACATCTTCAGCAGTTTCTGACAAAAATTTATAATCGGACAATGGTAGTGTAGGACAA GCAGGAAGTCGAACTAATACCCGTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCA CTGGTAATGTGTAGCTCTTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGA TCATTCCGTAATGCCTCGAGTAAGTCACCAACACTTGAATTAGCTGGTAAAAAAGCTATT CCAGGAATTCGACCATTGATTAACAAGCGATTAATGGGGACGAAACTACCTGAAGAATCA TTAGTGTCATTTCCATTATTCATATTTGTGTCCGAACTAGTACCGGATTCAAGTGACGAT GACGAACTTGCACGCTGCCATTGAGGAAACTGTGGTCCGAAAATTACTATATCAAGTGGG GTAAAAGCTGGACTAACGGACCCCTTGGCAACTGCATATTTCTTACTCCCCGCCGAAGTA ACCAAAGAGTGATCTACATCAAGAGGTAAATCATAACGCTTTGACTTGGACGATTTTTTG TTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAGAAAAATCATATCCTTTAGTAATT TTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTCGGTAACCAAGGATT GAAGGTAAGGTTCGACGGCAGCCTGAAGCTGATACAAGATTTTCTCTTTTTTTCGATCAG ATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAA TGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAG AAGCTTTGCATTGAAATTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTAT TTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCCGCGATATATGAGAAAGGATTT TTTGAATGTGATTAGTATGACTGTTGAATTCGCCATGAGGGACAGTCAAACAAATCCCAC TTATATGAACACCTCCTGGAATCATTCGCGCAAGATTTCTACAATGTGACGCAATCCACT TTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAG TGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCCTGGGAACCAAACCGTCCGC CTATTATCACTCCACAACGGAACTCATCTACAGAGATCAAACGATCTGCAAAACTATTGT CAAACAAAACCTCCGCAATCATCCTTGGGGCAACGCTTCAGTGATATCGTCCGCTGATGG AGGTTACTGAGCACT



consensusID : consensus_10778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence
                              [GATTTTTGTTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAGAAAAATCCATATCCTTTAGTAATTTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTCGGTAACCAAGGATTGAAGGTAAGGTTCGACGGCAGCCTAGGTTAAAAATAATTGTGAATACCTGAAGCTGATACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAA]

[-] EMBL CD139842             [GATTTTTGTTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAGAAAAATCCATATCCTTTAGTAATTTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTCGGTAACCAAGGATTGAAGGTAAGGTTCGACGGCAGCCTAGGTTAAAAATAATTGTGAATACCTGAAGCTGATACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAA]


>consensus_10778#1 GATTTTTGTTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAGAAAAATCCATATCCT TTAGTAATTTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTCGGTAA CCAAGGATTGAAGGTAAGGTTCGACGGCAGCCTAGGTTAAAAATAATTGTGAATACCTGA AGCTGATACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGT AGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACT GTTCGAAATTGATTATTAGATCCATCTGCAGCAGAA



consensusID : consensus_10778#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 323
fasta sequence
                              [ACCCTCATAGGTTCGCAGGCAGCCTGAAGCTGATACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAATTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTATTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCTGCGAACCTATGAGGGGATCCTCTAGAGTCGTCCGAACGAAGGC]

[-] EMBL CD060782             [ACCCTCATAGGTTCGCAGGCAGCCTGAAGCTGATACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAATTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTATTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCTGCGAACCTATGAGGGGATCCTCTAGAGTCGTCCGAACGAAGGC]
[-] EMBL CD061098             [              GCAGCCAGCCTGAAGATNATACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAATTTTTTTGTCTTGGGGTCAGCTACCAACACCAATTTATATGAATTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCTGCGAGCCTATGAGGGGATCCT                      ]
[-] EMBL CD061093             [                             CTGATACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCAATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCAGAAGCTTTGCATTGAAATTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTATTTTTTGAACAAATAAACTTGTTCATGA                                                       ]


>consensus_10778#2 ACCCTCATAGGTTCGCAGGCAGCCTGAAGCTGATACAAGATTTTCTCTTTTTTTCGATCA GATGGTAAGTGGGTCTCCAAAGAAAGTAGTATATGAGTTTTGAATGATACCCATCGATCA ATGAAGGGACGAATCTTTACTTCCACTGTTCGAAATTGATTATTAGATCCATCTGCAGCA GAAGCTTTGCATTGAAATTTTTTTGTTTTGGGGTCAGCTACCAACACCAATTTCTCTGTA TTTTTTGAACAAATAAACTTGTTCATGAGCGTATCATCCTGCGAACCTATGAGGGGATCC TCTAGAGTCGTCCGAACGAAGGC



consensusID : consensus_10778#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 240
fasta sequence
                              [ACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCACGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCCTGGGACCCTTCATCCATGACAAAACCTTATTTAACACGGAATTCAATCTTTAGCCTATCG]

[+] EMBL BG930738             [ACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCACGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCCTGGGACCCTTCATCCATGACAAAACCTTATTTAACACGGAATTCAATCTTTAGCCTATCG]
[-] EMBL CD066484             [                                                                   ACGCAATCCTCTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCAATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAAC                                                                     ]


>consensus_10778#3 ACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCACGATTTCTA CAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGA TGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCC TGGGACCCTTCATCCATGACAAAACCTTATTTAACACGGAATTCAATCTTTAGCCTATCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      ACAGGANCAGATTCAACCACTTCATCTATCATTTCAGATTCAGAAAATTCATCATCAGCA 60
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      CTAAGTTCAGGACTTTTTTCCAAAGTAGTATCCAGGCACGACGCATCTATACGATGTGAA 120
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      GAAAATACTTCGATTTCAGAAACAGAATTCTTTAGACCAGTGGTATTGGAAGTAATCCTC 180
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      TCCTCTGTGGGAATAGTGAGAGTAGTTCCAAGAGGTAAACAGAAGTAAACTAAACGATTT 240
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      ACAACATCTTCAGCAGTTTCTGACAAAAATTTATAATCGGACAATGGTAGTGTAGGACAA 300
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      GCAGGAAGTCGAACTAATACCCGTTGAGGTAGTAACATGCGAGGAACTTCCAGTTCAGCA 360
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      CTGGTAATGTGTAGCTCTTCTGTTAAGAGTTGTAATCGTGCTAATATACTCCGTACAAGA 420
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      TCATTCCGTAATGCCTCGAGTAAGTCACCAACACTTGAATTAGCTGGTAAAAAAGCTATT 480
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      CCAGGAATTCGACCATTGATTAACAAGCGATTAATGGGGACGAAACTACCTGAAGAATCA 540
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      TTAGTGTCATTTCCATTATTCATATTTGTGTCCGAACTAGTACCGGATTCAAGTGACGAT 600
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      GACGAACTTGCACGCTGCCATTGAGGAAACTGTGGTCCGAAAATTACTATATCAAGTGGG 660
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      GTAAAAGCTGGACTAACGGACCCCTTGGCAACTGCATATTTCTTACTCCCCGCCGAAGTA 720
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ----------------------------------------------------GATTTTTG 8
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      ACCAAAGAGTGATCTACATCAAGAGGTAAATCATAACGCTTTGACTTGGACGATTTTTTG 780
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      TTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAGAAAAATCCATATCCTTTAGTAAT 68
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      TTCTTTTTGCTTTGGATGTCGCCATCGAGGGGTACAGAAAAATC-ATATCCTTTAGTAAT 839
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      TTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTCGGTAACCAAGGAT 128
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      TTTTCATCAGCTTGACGCAGTTCGCCATTGATCAGTAACTGTGTTTCGGTAACCAAGGAT 899
consensus_10778#3      ------------------------------------------------------ACAGTC 6
                                                                                   

consensus_10778#1      TGAAGGTAAGGTTCGACGGCAGCCTAGGTTAAAAATAATTGTGAATA-CCTGAA-GCTGA 186
consensus_10778#2      --------------------------ACCCTCATAGGTTCGCAGGCAGCCTGAA-GCTGA 33
consensus_10778#0      TGAAGGTA--------------------------AGGTTCGACGGCAGCCTGAA-GCTGA 932
consensus_10778#3      AAACAAATCCCACTTATATGAACACCTCCTGGAATCATTCGCGCACGATTTCTACAATGT 66
                                                             * *         *  *   ** 

consensus_10778#1      TACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGA---AAGTAGT 243
consensus_10778#2      TACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGA---AAGTAGT 90
consensus_10778#0      TACAAGATTTTCTCTTTTTTTCGATCAGATGGTAAGTGGGTCTCCAAAGA---AAGTAGT 989
consensus_10778#3      GACGCAATCCACTTTTCACTTAAATCCTCAATCATACGGGGCGAAACAGATCGATGAGGT 126
                        **   **   ** **   **  ***       *   *** *   * ***   * *  **

consensus_10778#1      ATATGAGTTTTGAATGATACCCATCG--ATCAATGAAGGGACGAATCTTTACTTCCACTG 301
consensus_10778#2      ATATGAGTTTTGAATGATACCCATCG--ATCAATGAAGGGACGAATCTTTACTTCCACTG 148
consensus_10778#0      ATATGAGTTTTGAATGATACCCATCG--ATCAATGAAGGGACGAATCTTTACTTCCACTG 1047
consensus_10778#3      GGATCA-TCTGAAGTGTCATCCTTTGGAATTTCAATAGGTAAGAACAAACACTCCTGGGA 185
                         ** * * *  * **  * ** * *  **      *** * ***     *** *     

consensus_10778#1      TTCGAAATTGATTATTAGATCC-ATCTGCAGCAGAA------------------------ 336
consensus_10778#2      TTCGAAATTGATTATTAGATCC-ATCTGCAGCAGAAGCTTTGCATTGAAATTTTTTTGTT 207
consensus_10778#0      TTCGAAATTGATTATTAGATCC-ATCTGCAGCAGAAGCTTTGCATTGAAATTTTTTTGTT 1106
consensus_10778#3      CCCTTCATCCATGACAAAACCTTATTTAACACGGAATTCAATCTTTAGCCTATCG----- 240
                         *   **  ** *  * * *  ** *    * ***                        

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      TTGGGGTCAGCTACCAACACCAATTTCTCTGTATTTTTTGAACAAATAAACTTGTTCATG 267
consensus_10778#0      TTGGGGTCAGCTACCAACACCAATTTCTCTGTATTTTTTGAACAAATAAACTTGTTCATG 1166
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      AGCGTATCATCCTGCGA-ACCTATGAGGGGATCCTCTAGA-GTCGTCCGAACGAAGGC-- 323
consensus_10778#0      AGCGTATCATCCCGCGATATATGAGAAAGGATTTTTTGAATGTGATTAGTATGACTGTTG 1226
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      AATTCGCCATGAGGGACAGTCAAACAAATCCCACTTATATGAACACCTCCTGGAATCATT 1286
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      CGCGCAAGATTTCTACAATGTGACGCAATCCACTTTTCACTTAAATCCTCAATCATACGG 1346
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      GGCGAAACAGATCGATGAGGTGGATCATCTGAAGTGTCATCCTTTGGAATTTCAATAGGT 1406
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      AAGAACAAACACTCCTGGGAACCAAACCGTCCGCCTATTATCACTCCACAACGGAACTCA 1466
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      ------------------------------------------------------------
consensus_10778#2      ------------------------------------------------------------
consensus_10778#0      TCTACAGAGATCAAACGATCTGCAAAACTATTGTCAAACAAAACCTCCGCAATCATCCTT 1526
consensus_10778#3      ------------------------------------------------------------
                                                                                   

consensus_10778#1      -------------------------------------------------
consensus_10778#2      -------------------------------------------------
consensus_10778#0      GGGGCAACGCTTCAGTGATATCGTCCGCTGATGGAGGTTACTGAGCACT 1575
consensus_10778#3      -------------------------------------------------
                                                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)