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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1515 fasta sequence
[GTCTTTGGAATAATTTTTTATTGTGTAATATACAGCACTTTCATGGAACTGGGGAGTTTTGTGCATGTGCATACACACATGTTACTTAGGTGCTTAATGGACTGAAACGAAACGAAAACTGATGCAAATACGCACTGAATATTAAACTTAGCATTTTTTGTACGACAGGGAAATTGAGCGTGGCTTATATCTTGCTGAAATTAGTCAGTCATTTGGTTGTCTTATACACCGATGAATTTTATTGTGATATTATGGGGAACGAATTGTGACTACAACGAGTCAGATGTTAATCATAAACAACGCAACCTAAAAACGAGAGTTTAGTTCGTTTAAGATCAGAATATGCAACCATTTTACACTCAACATAACTTATCGGCACAGTGTGTAAACATACAATAGCTAACTTTCGAATTTCTACTGGTTGACTTACATAAGTAGACAGAAAATCTGAAGGTCTACTGTGTCTATAAAACCTACCGAATGAATATTTCAACG-AAATTGCCATACATATTGCATGTTATATAATGTACGATTGAGTGCAGTACAAAATAAAGTACAGATAATAAGCTGCATATGCATTGATTTTCCTCTTAGTATAGATGAATCTAGCTTGATTTATAAACAAATAAAATTTATTTAATCAGACATCAGGACCAAAGTATCCGTTCATAAACCATTATATGAGGTATCGGATCCACTATAGTTTATTTATTTGGTTAAATGCACTGACCAATAACAGAGGTTTTAATATATTCTTGTTAATTTCCAACTGATAAATATATTTGATTGCAGAAATTTGAAAGTGGTTGGAATTTTGTCCTGCTGATTCTCATAAATGCTATTGTTCAAGTGAAACGATTAAAATACTAATGTTTTTAAAGTTAAACAAAAAACAAAGACCAAAAGTAATAAATGCTTTGCATCATTTCTGACAAAATATAGTCTAATTTGGAATAAAATCGAACTGAGTGGATATTAGTGGACGATTCGTATATTTGTTACAACCTACATCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGCAGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGATATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAACTATGGTATAGATACGTCGTGGATAGTGTGTTATAATAGCACATTAAGTAGCTGAACAAATGATGCGTAGGAGCCTTTTGTTTAACTTTGAAATAAATTAATTCTCGTAGAATTCTATGCATTAACAATAGATTTCATGGTTTTGGTAATCAGGGTAGTTTGGCGAGATTTTTAAAGTCAATAGTTGCTACTAAATTGATGACACGTTGTTTGTCCGAGCAGAATCAAAATACCCTGTTTTAAGTAGTGAAAATAGTTTCCATCTGCTTAC]
[+] EMBL BG931772 [GTCTTTGGAATAATTTTTTATTGTGTAATATACAGCACTTTCATGGAACTGGGGAGTTTTGTGCATGTGCATACACACATGTTACTTAGGTGCTTAATGGACTGAAACGAAACGAAAACTGATGCAAATACGCACTGAATATTAAACTTAGCATTTTTTGTACGACAGGGAAATTGAGCGTGGCTTATATCTTGCTGAAATTAGTCAGTCATTTGGTTGTCTTATACACCGATGAATTTTATTGTGATATTATGGGGAACGAATTGTGACTACAACGA ]
[-] EMBL CD117007 [ TTAGCATTTTTTGTACGACAGGGAAATTGAGTGTGGCTTATATCTTGCTGAAATTAGTCAGTCATTTGGTTGTCTTATACACCGATGAATTTTATTGTGATATTATGGGGAACGAATTGTGACTACAACGAGTCAGATGTTAATCATAAACAACGCAACCTAAAAACGAGAGTTTAGTTCGTTTAAGATCAGAATATGCAACCATTTTACACTCAACATAACTTATCGGCACAGTGTGTAAACATACAATAGCTAACTTTCGAATTTCTACTGGTTGACTTACATAAGTAGACAGAAAATCTGAAGGTCTACTGTGTCTATAAAACCTACCGAATGAATATTTCAACGAAAATTGCCATACATATTGCATGTTATATAATGTACGATTGAGTGCAGTACAAAATAAAGTACAGATAATAAGCTGCATATGCATTGATTTTCCTCTTAGTATAGATGAATCTAGCTTGATTTATAAACAAATAAAATTTATTTAATCAGACATCAGGACCAAAGTATCCGTTCATAAACCA ]
[-] EMBL CD197778 [ GATCAGAATATGCAACCATTTTACACTCAACAAAACTTATCGGCACAGTGTGTAAACATACAATAGCTAACTTTCGAATTTCTACTGGTTGACTTACATAAGTAGACAGAAAATCTGAAGGTCTACTGTGTCTATAAAACCTACCGAATGAATATTTCAACG AAATTGCCATACATATTGCATGTTATATAATGTACGATTGAGTGCAGTACAAAATAAAGTACTGATAATAAGCTGCATATGCATTGATTTTCCTCTTAGTATAGATGAATCTAGCTTGATTTATAAACAAATAAAATTTATTTAATCAGACATCAGGACCAAAGTATCCGTTCATAAACCATTATATGAGGTATCGGATCCACTATAGTTTATTTATTTGGTTAAATGCACTGACCAATAACAGAGGTTTTAATATATTCTTGTTAATTTCCAACTGATAAATATATTTGATTGCAGAAATTTGAAAGTGGTTGGAAT ]
[+] EMBL CD125003 [ TTTATTTATTTGGTTAAATGCACTGACCAATAACAGAGGTTTTAATATATTCTTGTTAATTTCCAACTGATAAATATATTTGATTGCAGAAATTTGAAAGTGGTTGGAATTTTGTCCTGCTGATTCTCATAAATGCTATTGTTCAAGTGAAACGATTAAAATACTAATGTTTTTAAAGTTAAACAAAAAACAAAGACCAAAAGTAATAAATGCTTTGCATCATTTCTGACAAAATATAGTCTAATTTGGAATAAAATCGAACTGAGTGGATATTAGTGGACGATTCGTATATTTGTTACAACCTACATCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGCAGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGATATTAAATGACATCAAAAGTATAAAATATTGTCCTATGATCATGTAATTAC ]
[-] EMBL CD124945 [ AAAACAAAGACCAAAAGTAATAAATGCTNTGCATCATTTCTGACAAAATATAGTCTAATTTGGAATANAATCGAACTGAGTGGATATTAGTGGACGATTCGTATATTTGTTACAACCTACATCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGCAGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGATATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAACTATGGTATAGATACGTCGTGGATAGTGTGTTATAATAGCACATTAAGTAGCTGAACAAATGATGCGTAGGAGCCTTTTGTTTAACTTTGAAATAAATTAATTCTCGTAGAATTCTATGCATTAACAATAGATTTCATGGTTTTGGTAATCAGGGTAGTTTGGCGAGATTTTTAAAGTCAATAGTTGCTACTAAATTGATGACACGTTGTTTGTCCGAGCAGAATCAAAATACCCTGTTTTAAGTAGTGAAAATAGTTTCCATCTGCTTAC]
[+] EMBL CD088354 [ CAACCTGCATCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGCAGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGATATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAACTATGGTATAGATACGTCGTGGATAGTGTGTTATAATAGCACGTTAAGTAGCTGAACAAATGATGCGTAGGAGCCTTTTGTTTAACTTTGAAATAAATTAATTCTCGTAGAATTCTATGCATTAACAATAGATTTCATGGTTTTGGTAATCAGGGTAGTTTGGCGAGATTTTTAAAGTCAATAGTTGCTACTAAATTGATGACACGTTGTTTGTCCGAGC ]
[+] EMBL CD088350 [ ccACCTGCATCTTAATCACGAGAAAACTGTTTCCTATCTTCGGAGCTAACTAAGCAAATACATATTTGCAGAACAAGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAAGCGACAAAGGCATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGATTAAGCACCATCGATATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAAC ]
consensusID : consensus_10788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1297 fasta sequence
[AGCGATTAAGCAATATGTTGGATTTTCAGTAGACGGTTGGTCTAATCCTCCCTAGATTGGATGCAGATCTTGCAACCAGATGTAGGTATGCGGTACTTTGAAGCCAAACTTGCGAGTATTTAAACAAGACTCTAAATGCGAGCATTAACTTGCAAATTTGAGCAATAATGATGGTGAAAATGAAAGAAATGCAAATAAAATAATAACACCATGATGATTAATTATATCATCAGCAGTTTCACATTGCGCTTCATAAGATCTAATAAACAAGGAAAAATATTAATTGAATGTTTCGATTTTTCTTATTGTCCTAAATAACATAACTGTTTGTTGCAATGGTCAAGGTCATGCTTTAGGCATTGTGCGGTGGAGGCGGGATTTGTCTGGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTTACTCTGCATCTATCCAAAAAACAACATATTTTGTATGTTAATCAGACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACACAATGATTCGCANAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTCATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTCGAAATTGTTTGTGGCGATGAACACATATCTTTCACAACTTC-AAAATAGGATCCCTGATTGATATTACGAATAGCAAGGATCCTGAGGGATT-AGAACATA-TACTACTTAG-TCA-GACCTC-AGTGTCTGGTG-TCTC-CTGA-TGGA-TGCAC-TCAAAATAAAGCCAATATAA]
[+] EMBL CD111452 [AGCGATTAAGCAATATGTTGGATTTTCAGTAGACGGTTGGTCTAATCCTCCCTAGATTGGATGCAGATCTTGCAACCAGATGTAGGTATGCGGTACTTTGAAGCCAAACTTGCGAGTATTTAAACAAGACTCTAAATGCGAGCATTAACTTGCAAATTTGAGCAATAATGATGGTGAAAATGAAAGAAATGCAAATAAAATAATAACACCATGATGATTAATTATATCATCAGCAGTTTCACATTGCGCTTCATAAGATCTAATAAACAAGGAAAAATATTAATTGAATGTTTCGATTTTTCTTATTGTCCTAAATAACATAACTGTTTGTTGCAATGGTCAAGGTCATGCTTTAGGCATTGTGCGGTGGAGGCGGGATTTGTCTGGAGTATTAGTCGTCGTTT ]
[+] EMBL CD118647 [ CAAGGTCATGCTTTAGGCATTGTGCGGTGGAGGCGGGATTTGTCTGGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTTACTCTGCATCTATCCAAAAAACAACATATTTTGTATGTTAATCAGACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCANAAAAAGTGATTAACANATGACAAGCTCATTNTATTTGCGATACTACGTTGGTCATAAAGGCAAGT ]
[+] EMBL CD183514 [ TGCGGCGGAGGCGGGATTTGTCTGGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTTACTCTGCATCTATCCAAAAAACAACATATTTTGTATGTTAATCAGACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTC ]
[+] EMBL CD083631 [ GGCGGGATTTGTCTGGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTTACTCTGCATCTATCCAAAAAACAACATATTTTGTATGTTAATCAGACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATCATTCAAAAAAAGTGATTAAC ]
[+] EMBL CD082100 [ ctcgaggaACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATTTTATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACACAATGATTCGCANAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTCATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTCGAAATTGTTTGTGGCGATGAACACATATCTNTCACAACTTC AAAATANGATCCCTGATTGATATTACGAATAGCANGGATCCTGAGGGATT AGAACATA TACTACTTAG TCA GACCTC AGTGTCTGGTG TCTC CTGA TGGA TGCAC TCAAtaagcat ]
[+] EMBL CD079107 [ ACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACACAATGATTCGCANAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGA ]
[-] EMBL CD075715 [ TAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATANTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACCCAATGATTCGCAAAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTCATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTCGAAATTGTTTGTGGCGATGAACACATATCTTTCACAACTTCAAAAATAGGATCCCTGATTGATATTACGAATAGCAAGGATCCTGAGGGATTAAGAACATATTACTACTTAGTTCAGGACCTCAAGTGTCTGGTGTTCTCGCTGATTGGATTGCACTTCAAAATAAAGCCAATATAA]
[-] EMBL CD073561 [ CACTCAATATGCTTGATANTACAACTCACCTCACTCCCGTTTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACACAATGATTCGCAAAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTCATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTTGAAATTGTTTGTGGCGATGAACACATATCTTTCACAACTTCAAAAATAGGATCCCTGATTGATATTACGAATAGCAAGGATCCTGAGGGATTAAGAACATATTACTACTTAGTTCAGGACCTCAAGTGTCTGGTGTTCTCGCTGATTGGATTGCACTTCAAAATAAAGCCAATATAA]
consensusID : consensus_10788#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence
[CTCCGATGGCTTCAAACTCCACCAACGTACCACTTTTGATCCATTTTGCTGGAACAGATATCTCAAGAGACTTTGTGGGACCTTCTTCACAACGTATTAGTCCAGAGATTTCCGATTGCAACTTACTTTCCTCAATCTCCGTAGGAATGTTATCATAAAAGAACGATACCTTCCCATTTGGGTGTATTAAACTCGTCATTGTGGCTGTAACATCTGAACCATCAACGTTTATCGAAATATTCCTTTTGACTCCTAATAATTCCTTCTCATCCAAAACTCTAGATTCAGACTTCTTATAGTTTTTTATGTAATTAATAATAGTTCCAATGTAGGAACCTCCGAATTCAAATACATTTTCTCCATGATATTTGTAAAAATCAATTTGTTCAACGTGAATACCGTAATAACTACACGAGAATTGGGGTATACCATAGTATATGTAACTTATCTTATTTTTAAAACGGTCACTCGGAACTGGTTGAGATTGATTACGTTGAATCCTCATTGAATATTTATAATGAGGAGAATATCGATAAGTATCATTCTCAATAATGACAATCTCATAGTGACTCAAATCAGAGTTTTTGCAATAGTCATTGCAGTTGAAACGTTTGTAATGCCAAACAAAGATAAGATAAATTAGTACCCATAGACTAGGCGAAAAGTTATATCTCATCTTATCGTGTCAAG]
[+] EMBL CD094689 [CTCCGATGGCTTCAAACTCCACCAACGTACCACTTTTGATCCATTTTGCTGGAACAGATATCTCAAGAGACTTTGTGGGACCTTCTTCACAACGTATTAGTCCAGAGATTTCCGATTGCAACTTACTTTCCTCAATCTCCGTAGGAATGTTATCATAAAAGAACGATACCTTCCCATTTGGGTGTATTAAACTCGTCATTGTGGCTGTAACATCTGAACCATCAACGTTTATCGAAATATTCCTTTTGACTCCTAATAATTCCTTCTCATCCAAAACTCTAGATTCAGACTTCTTATAGTTTTTTATGTAATTAATAATAGTTCCAATGTAGGAACCTCCGAATTCAAATACATTTTCTCCATGATATTTGTAAAAATCAATTTGTTCAACGTGAATACCGTAATAACTACACGAGAATTGGGGTATACCATAGTATATGTAACTTATCTTATTTTTAAAACGGTCACTCGGAACTGGTTGAG ]
[-] EMBL CD094667 [ CGTAGGAATGTTATCATAATAGAACGACACCTTCCCATTTGGGTGTATTAAACTCGTCATTGTGGCTGTAACATCTGAACCATCAACGTTTATCGAAATATTCCTTTTGACTCCTAATAATTCCTTCTCATCCAAAACTCTAGATTCAGACTTCTTATAGTTTTTTATGTAATTAATAATAGTTCCAATGTAGGACCCTCCAAATTCAAATACATTTTCTCCATGATATTTGTAAAAATCAATTTGTTCAACGTGAATACCGTAATAATGACACGAGAATTGGGGTTTACCATAGTATATGTAACTTATCTTATTTTTAAAACGGTCACTCGGAACTGGTTGAGATTGATTACGTTGAATCCTCATTGAATATTTATAATGAGGAGAATATCGATAAGTATCATTCTCAATAATGACAATCTCATAGTGACTCAAATCAGAGTTTTTGCAATAGTCATTGCAGTTGAAACGTTTGTAATGCCAAACAAAGATAAGATAAATTAGTACCCATAGACTAGGCGAAAAGTTATATCTCATCTTATCGTGTCAAG]
consensusID : consensus_10788#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[ACCGAAATAANAACTATACAATCCGGAATTGCCGATGGTTGGATGGGATTAGATATTGGTCCAAAAACAATTGAAGAATTCAGTAAAGTGATTAGTCGTGCCAAAACTATTGTTTGGAACGGTCCGATGGGTGTTTTTGAAATGGACAAATTTGCAACAGGAACAAAAGCAGCAATGGATGAAGTACTCNAAGCTACTAAAAATGGTGCTACAACTATTATTGGTGGTGGTGACACCGCAACATGCTGCGCCAAATGGGACACAGAAGAANAANTTAGTCNTGTCAGTACTGGTGGTGGTGCTAGTCCTTGAACTTCTCCCAAGGTAAACAATTAACCCNGAATTGTTGCNCTTACGGATGCNCCTTTAATACNTCCNGGTNAATANTATCCCCCTNACNTNCNTAAATNAATTTAAAATANTGNTNCCNTAACTTTGAATTGTTCCCNATTTN]
[+] EMBL AW499465 [ACCGAAATAANAACTATACAATCCGGAATTGCCGATGGTTGGATGGGATTAGATATTGGTCCAAAAACAATTGAAGAATTCAGTAAAGTGATTAGTCGTGCCAAAACTATTGTTTGGAACGGTCCGATGGGTGTTTTTGAAATGGACAAATTTGCAACAGGAACAAAAGCAGCAATGGATGAAGTACTCNAAGCTACTAAAAATGGTGCTACAACTATTATTGGTGGTGGTGACACCGCAACATGCTGCGCCAAATGGGACACAGAAGAANAANTTAGTCNTGTCAGTACTGGTGGTGGTGCTAGTCCTTGAACTTCTCCCAAGGTAAACAATTAACCCNGAATTGTTGCNCTTACGGATGCNCCTTTAATACNTCCNGGTNAATANTATCCCCCTNACNTNCNTAAATNAATTTAAAATANTGNTNCCNTAACTTTGAATTGTTCCCNATTTN]
consensusID : consensus_10788#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 453 fasta sequence
[ACCGACAGACTCTAATGTGGTCAGCTACGTGGCCTAGGGAAGTAAAAGCATTAGCAGAAGACTTCCTTTATGATTACATTCAAATAAATGTTGGTTCAACCAAGTTGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGAGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGA-ACGTGATCGTGCCCTAGACAGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGATATTAACGACGTCCGGTATATAATCAATTATGACTATCCGTCGCAAACTGAAGATTACATCCACAGAATTG]
[+] EMBL CD134846 [ACCGACAGACTCTAATGTGGTCAGCTACGTGGCCTAGGGAAGTAAAAGCATTAGCAGAAGACTTCCTTTATGATTACATTCAAATAAATGTTGGTTCAACCAAGTTGAGCGCGAACCACAACATTCGGCAACATGTAGAGAACCTAAATGAGAGTGAGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGAAAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGATACGTGATCGTGCCCTAGACAGTCACATATCTGTTCT ]
[+] EMBL CD192517 [ACCGACAGACTCTAATGTGGTCAGCTACGTGGCCTAGGGAAGTAAAAGCATTAGCAGAAGATTTCCTTTATGATTACATTCAAATAAATGTTGGTTCGACCAAGTTGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGAGAAGTTCAAGCGTTTACTCAGCCTCCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGA ACGTGATCGTGCCCTAGACAGTCACATATCTGTTCT ]
[-] EMBL CD156290 [ ATGTAGAGATCCTAAATGAGAGTGAGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGA ACGTGATCGTGCCCTAGACAGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGATATTAACGACGTCCGGTATATAATCAATTATGACTATCCGTCGCAAACTGAAGATTACATCCACAGAATTG]
[+] EMBL CD134810 [ ctGATACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGA ACGTGATCGTGCCCTAGACAGTCACATATCTGTTCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10788#1 ------------------------------------------------------------
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 GTCTTTGGAATAATTTTTTATTGTGTAATATACAGCACTTTCATGGAACTGGGGAGTTTT 60
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 ------------------------------------------------------------
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 GTGCATGTGCATACACACATGTTACTTAGGTGCTTAATGGACTGAAACGAAACGAAAACT 120
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 ------------------------------------------------------------
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 GATGCAAATACGCACTGAATATTAAACTTAGCATTTTTTGTACGACAGGGAAATTGAGCG 180
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 ----------------AGCGATTAAGCAATATGTTGGATTTTCAGTAGACGGTTGGTCTA 44
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ----------------------------------------CTCCGATGGCTTCAAACTCC 20
consensus_10788#0 TGGCTTATATCTTGCTGAAATTAGTCAGTCATTTGGTTGTCTTATACACCGATGAATTTT 240
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 ATCCTCCCTAGATTGGATGCAGATCTTGCAACCAGATGTAGGTATGCGGTACTTTGAAGC 104
consensus_10788#3 -------------------------------------ACCGAAATAANAACTATACAATC 23
consensus_10788#2 ACCAACGTACCACTTTTGATCCATTTTGCTGGAACAGATATCTCAAGAGACTTTGTGGGA 80
consensus_10788#0 ATTGTGATATTATGGGGAACGAATTGTGACTACAACGAGTCAGATGTTAATCATAAACAA 300
consensus_10788#4 -------------------------------------------------------ACCGA 5
consensus_10788#1 CAAACTTGCGAGTATTTAAAC---AAGACTCTAAATGCGAGCATTAAC--TTGCAAATTT 159
consensus_10788#3 CGGAATTGCCGATGGTTGGAT---GGGATTAGATATTGGTCCAAAAACAATTGAAGAATT 80
consensus_10788#2 CCTTCTTCACAACGTATTAGTCCAGAGATTTCCGATTG--CAACTTACTTTCCTCAATCT 138
consensus_10788#0 CGCAACCTAAAAACGAGAGTTTAGTTCGTTTAAGATCAGAATATGCAACCATTTTACACT 360
consensus_10788#4 CAGACTCTAATGTGGTCAGCT----ACGTGGCCTAGGGAAGTAAAAGCATTAGCAGAAGA 61
* * *
consensus_10788#1 GAGCAATAATGATGGTGAAAATGAAAGAAATGCAAATAAAATAATAACA---CCATGATG 216
consensus_10788#3 CAGTAA-AGTGAT--TAGTCGTGCCAAAACTATTGTTTGGA-----ACG---GTCCGATG 129
consensus_10788#2 CCGTAGGAATGTT----ATCATAAAAGAACGATACCTTCC-------CA---TTTGGGTG 184
consensus_10788#0 CAACATAACTTATCGGCACAGTGTGTAAACATACAATAGCTAACTTTCGAATTTCTACTG 420
consensus_10788#4 CTTCCTTTATGAT---TACATTCAAATAAATGTTGGTTCAA-----CCAAGTTGAGCGCG 113
* * * ** * * *
consensus_10788#1 -ATTAATTATATCATCAGCAGTTTCACATTGCGCTTCATAAGATCTAATAAACAAGG--- 272
consensus_10788#3 -GGTGTTTTTGAAATGGACAAATTTGCAACAGGAA-CAAAAGCAGCAATGGATGAAGTAC 187
consensus_10788#2 TATTAAACTCGTCATTGTGGCTGTAACATC-TGAACCATCAACGTTTATCGAAATATTCC 243
consensus_10788#0 GTTGACTTACATAAGTAGACAGAAAATCTGAAGGTCTACTGTGTCTATAAAACCTACCGA 480
consensus_10788#4 AACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGAGAAGTTCAAGCGTTTA 173
* *
consensus_10788#1 --AAAAATATTAATTGAATGTTTCGATTTTTCT-TAT-TGTCCTAAATAACATAACTGTT 328
consensus_10788#3 TCNAAGCTACTAA--AAATGGTGCTACAACTAT-TAT-TGGTGGTGGTGACACCGCAACA 243
consensus_10788#2 TTTTGACTCCTAATAATTCCTTCTCATCCAAAA-CTC-TAGATTCAGACTTCTTATAGTT 301
consensus_10788#0 ATGAATATTTCAACGAAAT--TGCCATACATAT-TGCATGTTATATAATGTACGATTGAG 537
consensus_10788#4 CTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAG 233
* * * *
consensus_10788#1 TGTTGCAATGGTCAAGGTCATGCT--TTAGGCATT-GTGCGGTGGAGGCGGGATTTGTCT 385
consensus_10788#3 TGCTGCGCCAAATGGGACACAG------AAGAANA-ANTTAGTCNTGTCAGTACTGGTG- 295
consensus_10788#2 TTTTATG-TAATTAATAAT---------AGTTCCA-ATGTAGGAACCTCCGAATTCAAAT 350
consensus_10788#0 TGCAGTACAAAATAAAGTACAGATAATAAGCTGCATATGCATTGATTTTCCTCTTAGTAT 597
consensus_10788#4 CGTACAGACGAACTTTGTCAAA------AACTCCA-AGATAAGGGTTTTGATGCCACAG- 285
*
consensus_10788#1 GGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTT 445
consensus_10788#3 GTGGTGCTAGTCCTTGAACTTCTCCCAAGGT-AAACAATTAACCCNGAATTGTTGCNCTT 354
consensus_10788#2 ACATTTTC--TCCATGA-TATTTGTAAAAATCAATTTGTTCAACGTGAATACCGTAATAA 407
consensus_10788#0 AGATGAATCTAGCTTGATTTATAAACAAATAAAATTTATTTAATCAGACATCAGGACCAA 657
consensus_10788#4 -CTATGCATGGGGATAAACACCAGAAAGAACGTGATCGTGCCCTAGACAGTCACATATCT 344
* *
consensus_10788#1 ACTC-TGCATCTATCCAAAAAACAACATATTTTGTATG---TTAATCAGACTGAAGGGAC 501
consensus_10788#3 ACGGATGCNCCT-TTAATACNTCCNGGTNAATANTATC---CCCCTNACN-TNCNTAAAT 409
consensus_10788#2 CTACACGAGAATTGGGGTATACCATAGTATATGTAACT---TATCTTATTTTTAAAACGG 464
consensus_10788#0 A-----GTATCCGTTCATAAACCATTATATGAGGTATCGGATCCACTATAGTTTATTTAT 712
consensus_10788#4 GTTCTCGTTGCCACAGATGTCGCATC-TAGAGGCTTAGATATTAACGACG--TCCGGTAT 401
* * * *
consensus_10788#1 TTTTTTAAA---AAGGT--GTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCA 556
consensus_10788#3 NAATTTAAA---ATANT--GNTNCCNTAACTTTGAATTGTTCCCNATTTN---------- 454
consensus_10788#2 TCACTCGGA---ACTG---GTTGAGATTGATTACGTTGAATCCTCATTGAATATTTATAA 518
consensus_10788#0 TTGGTTAAATGCACTGACCAATAACAGAGGTTTTAATATATTCTTGTTAATTTCCAACTG 772
consensus_10788#4 ATAATCAATT--ATGACTATCCGTCGCAAACTGAAGATTACATCCACAGAATTG------ 453
* * *
consensus_10788#1 TATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCT 616
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 TGAGGAGAATATCGATAAGTATCATTCTCAATAATGACAATCTCATAGTGACTCAAATCA 578
consensus_10788#0 ATAAATATATTTGATTGCAGAAATTTGAAAGTGGTTGGAATTTTGTCCTG--CTGATTCT 830
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 ATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTG-TAGGTATGGTATAA 675
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 GAGTTTTTGCAATAGTCATTGCAGTTGAAACGTTTGTAATGCCAAACAAAGATAAGATAA 638
consensus_10788#0 CATAAATGCTATTGTTCAAGTGAAACGATTAAAATACTAATGTTTTTAAAGTTAAACAAA 890
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 TGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTT 735
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ATTAGTACCCATAGACTAGGCGAAAAGTTATATCTCATCTTATCGTGTCAAG-------- 690
consensus_10788#0 AAACAAAGACCAAAAGTAATAAATGCTTTGCATCATTTCTGACAAAATATAGTCTAATTT 950
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 CTAACCTCTATGTATGCAGCACTCAATT-TGCTTGATACTACAACTCACCTCACTCCCGT 794
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 GGAATAAAATCGAACTGAGTGGATATTAGTGGACGATTCGTATATTTGTTACAACCTACA 1010
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 CTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAA 854
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 TCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGC 1070
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 AAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAA 914
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 AGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTG 1130
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 GTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAA 974
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 GGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGA 1190
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 CAACTCCAATTATAAAAATGACACAATGATTCGCANAGAGGCGTATGTTAGCCCCTCTGT 1034
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 TATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAACTATGG 1250
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 AGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTC 1094
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 TATAGATACGTCGTGGATAGTGTGTTATAATAGCACATTAAGTAGCTGAACAAATGATGC 1310
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 ATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTCGAAATTGTTTGTGGCGATGAACA 1154
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 GTAGGAGCCTTTTGTTTAACTTTGAAATAAATTAATTCTCGTAGAATTCTATGCATTAAC 1370
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 CATATCTTTCACAACTTCA--AAATAGGATCCCTGATTGATATTACGAATAGCAAGGATC 1212
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 AATAGATTTCATGGTTTTGGTAATCAGGGTAGTTTGGCGAGATTTTTAAAGTCAATAGTT 1430
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 CTGAGGGATTAGAACATATACTACTTAGTCAGACCTCAGTGTCTGGTGTCTCCTGATGGA 1272
consensus_10788#3 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 GCTACTAAATTGATGACACGTTGTTTGTCCGAGCAGAATCAAAATACCCTGTTTTAAGTA 1490
consensus_10788#4 ------------------------------------------------------------
consensus_10788#1 TGCACTCAAAATAAAGCCAATATAA 1297
consensus_10788#3 -------------------------
consensus_10788#2 -------------------------
consensus_10788#0 GTGAAAATAGTTTCCATCTGCTTAC 1515
consensus_10788#4 -------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||