These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1328 fasta sequence [GCTAAAACGGGGCATGTTTGGATGNCAGCTGTGCGTTGGGGCTTATTGCGCGTAGCATTCGCTCCATTTTACTGGAACTACTGGCGCAGTCATACATCCTTTCGTGTTGCTGTTTATATCATGGTTCACTTTTTTCTACAGTTCTTACAAGTAGTATTTTTCCTTCTGACGGACCCGCGGACCAGTAACAGCTCTCAGGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATTTACTCAGCGAATCATCAGTC-AAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAACTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAGTTTTTAAAGACTCATCTCGACACTGATTATCAAGATGACTATTCTGATCTATACGGTCCAGGTGATGATACCCAACATGAATTAAATATCTCGGATGTTACTCATGGAACAGATGGCCCACAGACTCCATGTACGTTGGATGAAGAATGTGGACGAACTAAACTTCTGCATAATTCGCAGGTATTAGAGCATAGGTCGAGAGTAGTTCGAAGACGCAGACGTCAAAATAGTTACAATTCAAAGCTTGGTAACTTAAGTCGTGGACACGATGCAGACGTAGAAGAGAGCGAAGGTGAACTTGTAACTGTCCCATCTAGAAAAGATATCGGGGAGATTGGTTTCGGTGATCAAATTGTGGATGGTTTCAATCTTGATTTTATTCACCAGTTACAATTAAAAGGAGGTGGTTCTGATCACCATTTTGGGTCTTCTAATTCAGATATCAATCCAGATTCCACAGTTCTACCTAAGAGAAAACAAGTATCTGAATCTCCACTCGATTCTTCAAATTTGCATACGTCTGCCAAATTATCAAATACTCTGGGTGATTTTTCAGCCGTAAGCCTTTTATTCTTCGTAAAACTTATTTCTTAGTGTGAGTTAATAAC] [-] EMBL CD063767 [GCTAAAACGGGGCATGTTTGGATGNCAGCTGTGCGTTGGGGCTTATTGCGCGTAGCATTCGCTCCATTTTACTGGAACTACTGGCGCAGTCATACATCCTTTCGTGTTGCTGTTTATATCATGGTTCACTTTTTTCTACAGTTCTTACAAGTAGTATTTTTCCTTCTGACGGACCCGCGGACCAGTAACAGCTCTCAGGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATTACTGCTCCGCATGGAAAAACTGGTTAATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGG ] [+] EMBL CD094461 [ CAGCTCTCAGGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATTTACTCAGCGAATCATCAGAC AAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAACTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAGTTTTTAAAGACTCATCTCGACACTGATTATCAAGATGACTATTCTGATCTATACGGTCCAGGTGATGATACCCAACATGAATTAAATATCTCGGATGTTACTCATGGAAC ] [+] EMBL CD095326 [ CAGCTCTCAGGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATATTAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATTTACTCAGCGAATCATCAGTC AAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAACTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAGT ] [+] EMBL CD094715 [ CAGCTCTCAGGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATTTACTCAGCGAATCATCAGTC AAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAACTGGAGACCAGGTG ] [+] EMBL CD094928 [ CAGCTCTCAGGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATTTACTCAGCGAATCATCAGTCAAAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGG ] [+] EMBL CD188822 [ CGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATTTACTCAGCGAATCATCAGTC AAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCT ] [-] EMBL CD095070 [ ATAACNCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATTTACTCAGCGAATCATCAGTCAAAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAACTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAGTTTTTAAAGACTCATCTCGACACTGATTATCAAGATGACTATTCTGATCTATACGGTCCAGGTGATGATACCCAACATGAATTAAATATCTCGGATGTTACTCATGGAACAGATGGCCCACAGACTCCATGTACGTTGGATGAAGAATGTGGACGAACTAAACTTC ] [-] EMBL CD094568 [ GACCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATTTACTCAGCGAATCATCAGTC AAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAACTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAGTTTTTAAAGACTCATCTCGACACTGATTATCAAGATGACTATTCTGATCTATACGGTCCAGGTGATGATACCCAACATGAATTAAATATCTCGGATGTTACTCATGGAACAGATGGCCCACAGACTCCATGTACGTTGGATGAAGAATGTGGACGAACTAAACTTCTGCATAATTCGCAGGTATTAGAGCATAGGTCGAGAGTA ] [-] EMBL CD094733 [ TTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAGATTTCCAACCAATATTTACTCAGCGAATCATCAGTC AAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAGCTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAGTTTTTAAAGACTCATCTCGACACTGATTATCAAGATGACTATTCTGATCTATACGGTCCAGGTGATGATACCCAACATGAATTAAATATCTCGGATGTTACTCATGGAACAGATGGCCCACAGACTCCATGTACGTTGGATGAAGAATGTGGACGAACTAAACTTCTGCATAATTCGCAGGTATTAGAGCATAGGTCGAGAGTA ] [-] EMBL CD137732 [ CAACCAATATTTACTCAGCGAATCATCAGTC AAAAAACGCACCAAATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAACTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAGTTCTTAAAGACTCATCTCGACACTGATTATCAAGATGACTATTCTGATCTATACGGTCCAGGTGATGATACCCAACATGAATTAAATATCTCGG ] [+] EMBL CD077834 [ TTTACTCAGGGAGTCATCAGGC AAATAACGCACCAAATGCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGTCGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGGAATATAAACTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAGTTTTTAAAGACTCATCTCGACACTGATTATCAAGATGACTATTCTGATCTATACGGTCCAGGTGATGATACCCAACATGATTTAAATATCTCGGA ] [+] EMBL CD121761 [ CTGATTATCAAGATGACTATTCTGATCCATACGGTCCAGGTGATGATACCCAACATGAATTAAATATCTCGGATGTTACTCATGGAACAGATGGCCCACAGACTCCATGTACGTTGGATGAAGAATGTGGACGAACTAAACTTCTGCATAATTCGCAGGTATTAGAGCATAGGTCGAGAGTAGTTCGAAGACGCAGACGTCAAAATAGTTACAATTCAAAGCTTGGTAACTTAAGTCGTGGACACGATGCAGACGTAGAAGAGAGCGAAGGTGAACTTGTAACTGTCCCATCTAGAAAAGATATCGGGGAGATTGGTTTCGGTGATCAAATTGTGGATGGTTTCAATCTTGATTTTATTCACCAGTTACAATTAAAAGGAGGTGGTTCTGATCACCATTTTGGGTCTTCTAATTCAGATATCAATCCAGATTCCACAGTTCTACC ] [-] EMBL CD201382 [ GCGAAGGTGAACTTGTAACTGTCCCATCTAGAAAAGATATTGGGGAGATTGGTTTCGGTGATCAAATTGTGGATGGTTTCAATCTTGATTTTATTCACCAGTTACAATTAAAAGGAGGTGGTTCTGATCACCATTTTGGGTCTTCTAATTCAGATATAAATCCAGATTCCACAGTTCTACCTAAGAGAAAACAAGTATCTGAATCTCCACTCGATTCTTCAAATTTGCATACGTCTGCCAAATTATCAAATACTCTGGGTGATTTTTCAGCCGTAAGCCTTTTATTCTTCGTAAAACTTATTTCTTAGTGTGAGTTAATAAC] consensusID : consensus_10792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [CACGTGGACGCACTACGAGGTACTGTAATCGCCGCGGCTGCAACGGCGCACTCGGTTAGGCATGCCAACGTGTGCCTCGGGGCTCATCTGCACGTAGCATTCTCACCATTCTACTGCACCTACTGGCACAGTCATACATCCTTTCGTGTTGCTGTTTATATCATGGTTCACTTTTTTCTACAGTTCTTACAAGTAGTATTTTTCCTTCTGACGGACCCGCGGACCAGTAACAGCTCTCAGGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATCACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCCTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGANCATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATAATACTGAGTCTTCAAATAAGTAGGTGTTTTGAAACACAANTCACCAGTGATTCTNCTATCCCACTGAAGACCGATCAATTCACTGAACTT] [+] EMBL CD091404 [CACGTGGACGCACTACGAGGTACTGTAATCGCCGCGGCTGCAACGGCGCACTCGGTTAGGCATGCCAACGTGTGCCTCGGGGCTCATCTGCACGTAGCATTCTCACCATTCTACTGCACCTACTGGCACAGTCATACATCCTTTCGTGTTGCTGTTTATATCATGGTTCACTTTTTTCTACAGTTCTTACAAGTAGTATTTTTCCTTCTGACGGACCCGCGGACCAGTAACAGCTCTCAGGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATCACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCCTGAATTCAAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGANCATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAATATAATACTGAGTCTTCAAATAAGTAGGTGTTTTGAAACACAANTCACCAGTGATTCTNCTATCCCACTGAAGACCGATCAATTCACTGAACTT] consensusID : consensus_10792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence [CAGTGAAAATATTTCATATCGTAAAATATCATGNTCATCACATTCTTCGGGAGCTGCAGAGTCTTCCACTAATTCTGCTCGATCTTTCAGTTCTGTGAGAAAGTTTCCAAAAGGAAATGGTCGCATTTTTGAACTGGAATCCGTACATGATGTTGGTGCAGAACTGACAGCCAATCCGAAATGTGGTCGTTCTAGTGTTGACAAACACTTGGACAAGAAGATATATTCTAGTTACACTGATATATTTAAATCCCAACTGATTGAAGACATGAAATCTACTGTCCAACCAGTTGAGTTATCTAAAGAATTCCAGAAGTTGAATAAACTGAACGAAAAACGTGACGTACAACCAGATAATTATGGTCGTTCAGAATTTAAGAACAAGTCTTATGAATGTATTAATAAAGATGATACCATTACCGTGTTTAATAGACAACGTGCTAAATACTTACGCTTGTTTTTACAACGTGCCTTTCACCTACAACATCCACGTGTTGTTATAAATTCGAATCAAACTGATACAGATATGCTTGAGTCAGATTCAGTTGTATTAGATAGTAAATGGTCAAATGAAAATTCAAAATATTCGGGTAACTA] [-] EMBL CD116665 [CAGTGAAAATATTTCATATCGTAAAATATCATGNTCATCACATTCTTCGGGAGCTGCAGAGTCTTCCACTAATTCTGCTCGATCTTTCAGTTCTGTGAGAAAGTTTCCAAAAGGAAATGGTCGCATTTTTGAACTGGAATCCGTACATGATGTTGGTGCAGAACTGACAGCCAATCCGAAATGTGGTCGTTCTAGTGTTGACAAACACTTGGACAAGAAGATATATTCTAGTTACACTGATATATTTAAATCCCAACTGATTGAAGACATGAAATCTACTGTCCAACCAGTTGAGTTATCTAAAGAATTCCAGAAGTTGAATAAACTGAACGAAAAACGTGACGTACAACCAGATAATTATGGTCGTTCAGAATTTAAGAACAAGTCTTATGAATGTATTAATAAAGATGATACCATTACCGTGTTTAATAGACAACGTGCTAAATACTTACGCTTGTTTTTACAACGTGCCTTTCACCTACAACATCCACGTGTTGTTATAAATTCGAATCAAACTGATACAGATATGCTTGAGTCAGATTCAGTTGTATTAGATAGTAAATGGTCAAATGAAAATTCAAAATATTCGGGTAACTA] [+] EMBL CD195693 [ GTCGCATTTTTGAACTGGAATCCGTACATGATGTTGGTGCAGAACTGACAGCCAATCCGAAATGTGGTCGTTCTAGTGTTGACAAACACTTGGACAAGAAGATATATTCTAGTTACACTGATATATTTAAATCCCAACTGATTGAAGACATGAAATCTACTGTCCAACCAGTTGAGTTATCTAAAGAATTCCAGAAGTTGAATAAACTGAACGAAAAACGTGACGTACAACCAGATAATTATGGTCGTTCAGAATTTAAGAAC AGTCTTATGAATGTATTAAT AAGATGATACCATTACC ] consensusID : consensus_10792#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 579 fasta sequence [TGGCACGTTTAAAAGGAGGTGGTTCTGATCACCATTTTGGGTCTTCTAATTCAGATATAAATCCAGATTCCACAGTTCTACCTAAGAGAAAACAAGTATCAGAATCTCCACTCGATTCTTCAAATTTGCATACGTCTGCCAAATTATCAAATACTCTGGGTGATTTTTCAGCCAATACTGAGTCTTCAAATAAAGTAGGTGTTTTGAAAACACAATCAACCAGTGATTCTCCTATCCCACTGAAGACCGATCAATTCACTGAACTTGAATGTCTTCCACCTCATTTGTCTCATATTTCTTCTTTAAGTAGTTCATTTGATTCTTTTGTTGGATCTAGTCGCCGTTCATTAAAACGTTCGTTGTCAATGAGCTTTCCTGTGCACAGTAAAAATACTACGACTAATGTATTTCTAATGTTGAAAAAGTCATTCTCTGATGGGTTATTAAATTGTTTAATGAACTTTCATTCGT--CAGTGTCGTTTATTTGGTAATGAATTACCCTACGCATTGAAGTCACCATTTCAACAAAAGAGAGATTCTCAATCCAACTACAATAATACGAATGACCAGGCTAGAGAA] [+] EMBL CD115440 [TGGCACGTTTAAAAGGAGGTGGTTCTGATCACCATTTTGGGTCTTCTAATTCAGATATAAATCCAGATTCCACAGTTCTACCTAAGAGAAAACAAGTATCAGAATCTCCACTCGATTCTTCAAATTTGCATACGTCTGCCAAATTATCAAATACTCTGGGTGATTTTTCAGCCAATACTGAGTCTTCAAATAAAGTAGGTGTTTTGAAAACACAATCAACCAGTGATTCTCCTATCCCACTGAAGACCGATTAATTCACTGAACTTGAATGTCTTCCACCTCATTTGTCTCATATTTCTTCTTTAAGTAGTTCATTTGATTCTTTTGTTGGATCTAGTCGCCGTTCATTAAAACGTTCGTTGTCAATGAGCTTTCCTGTGCACAGTAAAAATACTACGACTAATGTATTTCTAATGTTGAAAAAGTCATTCTCTGATGGGTTATTAAATTGTTTAATGAACTTTCATTCGT CAGTGTCGTTTATTTGGTAATGAATTACCCTACGCATTGAAGTCACCATTTCAACAAAAGAGAGATTCTCAATCCAACTACAATAATACGAATGACCAGGCTAGAGAA] [+] EMBL CD121827 [ GATTTTTCAGCCAATACTGAGTCTTCAAATAAAGTAGGTGTTTTGAAAACACAATCAACCAGTGATTCTCCTATCCCACTGAAGACCGATCAATTCACTGAACTTGAATGTCTTCCACCTCATTTGTCTCATATTTCTTCTTTAAGTAGTTCATTTGATTCTTTTGTTGGATCTAGTCGCCGTTCATTAAAACGTTC ] [+] EMBL CD189007 [ ctcctggCAATACTGAGTCTTCAAATAAAGTAGGTGTTTTGAAAACACAATCAACCAGTGATTCTCCTATCCCACTGAAGACCGATCAATTCACTGAACTTGAATGTCTTCCACCTCATTTGTCTCATATTTCTTCTTTAAGTAGTTCATTTGATTCTTTTGTTGGATCTAGTCGCCGTTCATTAAAACGTTCGTTGTCAATGAGCTTTCCTGTGCACAGTAAAAATACTACGACTAATGTATTTCTAATGTTGAAAAAGTCATTCTCTGATGGGTTATTAAATTGTTTAATGAACTTTCATTCGTCACAGTGTCGTTTATTTGGTAATGAATTACCCTACGCATTGAAGTCACCATTTCAACAAAAGAGAGATTTTCAATCCAACTACg ] consensusID : consensus_10792#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [NTACATCAAGACAGATTATTCCACCAGGTGGTCAATTAACATTAAGTTGTACTGCTGTTGGTGCACCAGTACCTAATGTTCAATGGTGTCGAGATAAACAAATTTTACGTGGAGAACAATTAAATAAACATTTGACTGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCCTGAATTCGAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAGTATTTACTCAGCGAATCATCAGTCAAAAAACGCACCAAATCCCAAAAAAAG] [-] EMBL CD132034 [NTACATCAAGACAGATTATTCCACCAGGTGGTCAATTAACATTAAGTTGTACTGCTGTTGGTGCACCAGTACCTAATGTTCAATGGTGTCGAGATAAACAAATTTTACGTGGAGAACAATTAAATAAACATTTGACTGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTCTCCATGCACATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGACCAATCAATCTTTCAAAGATATTGGTGACCATGGCCTGAATTCGAATTGTTGTCAATACAATCCGGACAATTTAGTAAATAATAAATTTAGTGATATACAGAGTGCTATAAACAGACATGATGAATATGACAATTCATCTTGGTTTCCTATACAGTCAACTATTTCAGAGCATCACAAATTTCCAACCAGTATTTACTCAGCGAATCATCAGTCAAAAAACGCACCAAATCCCAAAAAAAG] consensusID : consensus_10792#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 232 fasta sequence [CCCCGGTATGGCGCACCTTTCAAAAAGCGACCATTTCCTTTTGGAAACTTTCTCACAGAACTGAAAGATCGAGCAGAATTAGTGGAAGACTCTGCAGCTCCCGAAGAATGTGATGACAATGATATTTTACGATATGAAATATTTTCACTGCTCAAACGATTTCGTCGATTTGAACATAACTTTAAAACTTCTCTAGCCTGGTCATTCGTATTATTGTAGTTGGATTGAAAAT] [+] EMBL CD126992 [CCCCGGTATGGCGCACCTTTCAAAAAGCGACCATTTCCTTTTGGAAACTTTCTCACAGAACTGAAAGATCGAGCAGAATTAGTGGAAGACTCTGCAGCTCCCGAAGAATGTGATGACAATGATATTTTACGATATGAAATATTTTCACTGCTCAAACGATTTCGTCGATTTGAACATAACTTTAAAACTTCTCTAGCCTGGTCATTCGTATTATTGTAGTTGGATTGAAAAT] [+] EMBL CD127052 [ CATTTCCTTTTGGAAACTTTCTCACAGAACTGAAAGATCGAGCAGAATTAGTGGAAGACTCTGCAGCTCCCGAAGAATGTGATGACAATGATATTTTACGATATGAAATATTTTCACTGCTCAAACGATTTCGTCGATTTGAACATAACTTTAAAACTTCTCTAGCCTGGTCATTCGTATTATTGTAGTTGGATTGAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10792#0 ------------------------------------GCTAAAACGGGGCAT---GTTTGG 21 consensus_10792#1 CACGTGGACGCACTACGAGGTACTGTAATCGCCGCGGCTGCAACGGCGCACTCGGTTAGG 60 consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 -----------------------------TGGCACGTTTAAAAGGAGGTG----GTTCTG 27 consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ----------------------------------CAGTGAAAATATTTCAT--ATCGTAA 24 consensus_10792#0 -ATGNCAGC-TGTGCGTTGGGGCTTAT-TGCGCGTAGCATTCGCTCCATTTTACTGGAAC 78 consensus_10792#1 CATGCCAACGTGTGCCTCGGGGCTCATCTGCACGTAGCATTCTCACCATTCTACTGCACC 120 consensus_10792#4 ----------------------------------NTACAT-CAAGACAGATTATTCCACC 25 consensus_10792#3 ATCACCATTTTGGGTCTTCTAATTCAGATATAAATCCAGATTCCACAGTTCTACCTAAGA 87 consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 AATATCATGNTCATCACATTCTTCGGGAGCTGCAGAGTCTTCCACTAATTCTGCTCGATC 84 consensus_10792#0 TACTGGCGCAGTCAT-ACATCCTTTCGTGTTGCTGTTTATATCATGGTTCACTTTTTTCT 137 consensus_10792#1 TACTGGCACAGTCAT-ACATCCTTTCGTGTTGCTGTTTATATCATGGTTCACTTTTTTCT 179 consensus_10792#4 AGGTGGT-CAATTA--ACATTAAGTTGTACTGCTGTTGGTGCACCAGTACCTAATGTTCA 82 consensus_10792#3 GAAAACAAGTATCAGAATCTCCACTCGATTCTTCAAATTTGCATACGTCTGCCAAATTAT 147 consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 TTTCAGTTCTGTGAGAAAGTTTCCAAAAGGAAATGGTCGCATTTTTGAACTGGAATCCGT 144 consensus_10792#0 ACAGTTCTTACAAGTAGTATTTTTCCTTCTGACGGACCCGCGGACCAGTAACAGCTCTCA 197 consensus_10792#1 ACAGTTCTTACAAGTAGTATTTTTCCTTCTGACGGACCCGCGGACCAGTAACAGCTCTCA 239 consensus_10792#4 ATGGTGTCGAGATAAACAAATTTTACG--TGGAGAA----CAATTAAATAAACATTTGAC 136 consensus_10792#3 CAAATACTC-TGGGTGATTTTTCAGCCAATACTGAGTCTTCAAATAA--AGTAGGTGTTT 204 consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ACATGATGTTGGTGCAG------AACTGACAGCCAATCCGAAATGTGGTCGTTCTAGTGT 198 consensus_10792#0 GGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTC-TCCATGCAC--- 253 consensus_10792#1 GGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTC-TCCATGCAC--- 295 consensus_10792#4 TGATGATTTACTCCTTCCTTGCTTATTGGCTATTTGTCTGGGTATTC-TCCATGCAC--- 192 consensus_10792#3 TGAAAACACAATCAACCAGTGATTCTC--CTATCCCACTGAAGACCGATCAATTCACTGA 262 consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 TGACAAACACTTGGACAAGAAGATATATTCTAGTTACACTGATATATTTAAATCCCAACT 258 consensus_10792#0 ATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGA 313 consensus_10792#1 ATATCACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGA 355 consensus_10792#4 ATATTACTGCTCCGCATGGAAAAACTGGTTTATATTCGTCTTTTATAGATAACCCAATGA 252 consensus_10792#3 ACTTGAATGTCTTCCACCTCA--TTTGTCTCATATT--TCTTCTTTAAGTAGTTCATT-- 316 consensus_10792#5 -CCCCGGTATGGCGCACCTTTCAAAAAGCGACCATTTCCTTTTGGAAACTTTCTCACAGA 59 consensus_10792#2 GATTGAAGACATGAAATCTACTGTCCAACCA--GTTGAGTTATCTAAAGAATTCCAGAAG 316 * ** * * ** consensus_10792#0 CCAATCAATCTTTCAAAGATATTGGTGACCATGGCTTGAATTCAAATTGTTGTCAATACA 373 consensus_10792#1 CCAATCAATCTTTCAAAGATATTGGTGACCATGGCCTGAATTCAAATTGTTGTCAATACA 415 consensus_10792#4 CCAATCAATCTTTCAAAGATATTGGTGACCATGGCCTGAATTCGAATTGTTGTCAATACA 312 consensus_10792#3 ----TGATTCTTTTGTTGGATCTAGTCGCCGTTCATTAAAAC--GTTCGTTGTCAATGAG 370 consensus_10792#5 AC--TGAAAGATCGAGCAGAATTAGTGG---------AAGACTCTGCAGCTCCCGA-AGA 107 consensus_10792#2 TT--GAATAAACTGAACGAAAAACGTGACGTACAACCAGATAATTATGGTCGTTCAGAAT 374 * ** * * consensus_10792#0 ATCCGGACAA-TTTAGTAAA--TAATAAATTTAGTGATATACAGAGTGCTATAAACAGAC 430 consensus_10792#1 ATCCGGACAA-TTTAGTAAA--TAATAAATTTAGTGATATACAGAGTGCTATAAACAGAC 472 consensus_10792#4 ATCCGGACAA-TTTAGTAAA--TAATAAATTTAGTGATATACAGAGTGCTATAAACAGAC 369 consensus_10792#3 CTTTCCTGTG-CACAGTAAAAATACTACGACTAATG-TATTTCTAATGTTG-AAAAAGTC 427 consensus_10792#5 ATGTGATGAC-AATGATA----TTTTACGATATGAAATATTTTCACTGCTC-AAACGATT 161 consensus_10792#2 TTAAGAACAAGTCTTATGAATGTATTAATAAAGATGATACCATTACCGTGTTTAATAGAC 434 * * * ** ** * * ** consensus_10792#0 AT-----GATGAAT-ATGACAATTCATCTTG-GTTTCCTATACAGTCAACTATTTCAGAG 483 consensus_10792#1 AT-----GATGAAT-ATGANCATTCATCTTG-GTTTCCTATACAGTCAACTATTTCAGAG 525 consensus_10792#4 AT-----GATGAAT-ATGACAATTCATCTTG-GTTTCCTATACAGTCAACTATTTCAGAG 422 consensus_10792#3 ATTCTCTGATGGGTTATTAAATTGTTTAATG-AACTTTCATTCGTCAGTGTCGTTTATTT 486 consensus_10792#5 TC-----GTCGATT--TGAACATAACTTTAA-AACTTCTCT--AGCCTGGTCATTCGTAT 211 consensus_10792#2 AACGT--GCTAAATACTTACGCTTGTTTTTACAACGTGCCTTTCACCTACAACATCCACG 492 * * * * * * * * consensus_10792#0 CATCACAAATTTCCAACCAATATT-TACTCAGCGAATCATCAGTCAAAAAAC--GCACCA 540 consensus_10792#1 CATCACAAATTTCCAACCAATATAATACTGAGTCTTCAAATAAGTAGGTGTTTTGAAACA 585 consensus_10792#4 CATCACAAATTTCCAACCAGTATT-TACTCAGCGAATCATCAGTCAAAAAAC--GCACCA 479 consensus_10792#3 GGTAATGAATTACCCTAC-GCATTGAAGTCACCATTTCAACAAAAGAGAGATTCTCAATC 545 consensus_10792#5 TATTGTAGTTGGATTGAAAAT--------------------------------------- 232 consensus_10792#2 TGTTGTTATAAATTCGAATCAAACTGATACAGATATGCTTGAGTCAGAT-----TCAGTT 547 * consensus_10792#0 AATCCCAACAAAGAACCTATAAACAGTACTTCAGAACAATGTGGACATTCAAGTAGTGGT 600 consensus_10792#1 CAANTCACCAGTGATTCTNCTATCC-CACTGAAGACCGATCAATTCACTGAACTT----- 639 consensus_10792#4 AATCCCAAAAAAAG---------------------------------------------- 493 consensus_10792#3 CAACT--ACAATAATACGAATGACCAGGCTAGAGAA------------------------ 579 consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 GTATTAGATAGTAAATGGTCAAATGAAAATTCAAAATATTCGGGTAACTA---------- 597 consensus_10792#0 CGTTTCGAATGTTTCAAAACCTCTCAGTTAGTGGACAGAAATTACGCAAAAGCACAACGG 660 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 AATATAAACTGGAGACCAGGTGAGATGAAACCGAAAAGGCCACTAACTTCGTCCTATAAG 720 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 TTTTTAAAGACTCATCTCGACACTGATTATCAAGATGACTATTCTGATCTATACGGTCCA 780 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 GGTGATGATACCCAACATGAATTAAATATCTCGGATGTTACTCATGGAACAGATGGCCCA 840 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 CAGACTCCATGTACGTTGGATGAAGAATGTGGACGAACTAAACTTCTGCATAATTCGCAG 900 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 GTATTAGAGCATAGGTCGAGAGTAGTTCGAAGACGCAGACGTCAAAATAGTTACAATTCA 960 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 AAGCTTGGTAACTTAAGTCGTGGACACGATGCAGACGTAGAAGAGAGCGAAGGTGAACTT 1020 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 GTAACTGTCCCATCTAGAAAAGATATCGGGGAGATTGGTTTCGGTGATCAAATTGTGGAT 1080 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 GGTTTCAATCTTGATTTTATTCACCAGTTACAATTAAAAGGAGGTGGTTCTGATCACCAT 1140 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 TTTGGGTCTTCTAATTCAGATATCAATCCAGATTCCACAGTTCTACCTAAGAGAAAACAA 1200 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 GTATCTGAATCTCCACTCGATTCTTCAAATTTGCATACGTCTGCCAAATTATCAAATACT 1260 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 CTGGGTGATTTTTCAGCCGTAAGCCTTTTATTCTTCGTAAAACTTATTTCTTAGTGTGAG 1320 consensus_10792#1 ------------------------------------------------------------ consensus_10792#4 ------------------------------------------------------------ consensus_10792#3 ------------------------------------------------------------ consensus_10792#5 ------------------------------------------------------------ consensus_10792#2 ------------------------------------------------------------ consensus_10792#0 TTAATAAC 1328 consensus_10792#1 -------- consensus_10792#4 -------- consensus_10792#3 -------- consensus_10792#5 -------- consensus_10792#2 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||