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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2175 fasta sequence
[AATACAATTGTTTGTATACTACTAAAGAACTTACATGTAAAGATCGTGTTAACCGTGACCCAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTNTAGACCACATGGTGGTAGGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTAGATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACGAAGAGAATTC---AAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAACAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCATGGGCTACACATGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCG-AGGAATGAAACATTTTCC-ATGCAATAAAAA-TAGTGATGATCCCGTGACCCATCGATTATCAATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGCTTCAAAATCTAGATTCAATACCCTGAGAGCGAATACTAATCCGTTACACATCAACAGAAAAATATATCTTCCGATCAATCACCAATTGAATTGAACGATGAAACATCGACAATCGGAGACTTCAATGAAGTGACTATAGGCAATGTGTCTGCAGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCC--AAAAAAACCCGAGATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACCACAGACACCAGAAACTGAAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAGATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAACGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGACGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTATTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAG-ATATATTTTGAAATTTTTCAAGTATATTCACTTACCGGTCCTTTAAAAAAAAAAAAAAAA]
[-] EMBL CD062682 [AATACAATTGTTTGTATACTACTAAAGAACTTACATGTAAAGATCGTGTTAACCGTGACCCAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTNTAGACCACATGGTGGTAGGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTAGATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACGAAGAGAATTCAAGAAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAACAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCATGGGCTACACATGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGAAGGAATGAAACATTTTCCNATGCAATAAAAANTAGTGATGA ]
[+] EMBL SMVIFEPIA [ ATCACTACAATGAAAGACAATGTAACGAAGAGAATTC AAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACCGCCAGAAACAAAACTAGTCCGATCTCGGTCAGTACGACATTATAAAGAAGCATGGGCTACACATGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCG AGGAATGAAACATTTTCC ATGCAATAAAAA TAGTGATGATCCCGTGACCCATCGATTATCAATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGCTTCAAAATCTAGATTCAATACCCTGAGAGCGAATACTAATCCGTTACACATCAACAGAAAAATATATCTTCCGATCAATCACCAATTGAATTGAACGATGAAACATCGACAATCGGAGACTTCAATGAAGTGACTATAGGCAATGTGTCTGCAGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCC AAAAAAACCCGAGATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTAC GAGACACAATTGTCTACAAAAGAGGCG GCGACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGGAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACCACAGACACCAGAAACTGAAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAGATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAACGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGTGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGAACAACAAGATGCCACGCCTGTCTGACGCACAAACTTTGAAGAATGACCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATC TGGTTGCTGACTGGATTATTCTCACGTATTTAGTTAAAGAGAACTG ]
[-] EMBL CD148001 [ CATCGACAATCGGAGACTTCAATGAAGTGACTATAGGCAATGTGTCTGCGGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTGCAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACT ]
[-] EMBL CD067991 [ GTGTCTGCAGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATACTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCGAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCCAAAAAAAAACCCGAGATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACA ]
[-] EMBL CD068031 [ AATAGAAAATTACGAAGGGCTCTTGGAAATCCCATTACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATACTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCGAATTTTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCCAAAAAAAAACCCGAGATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACA ]
[-] EMBL CD183089 [ CATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCAAACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAAAGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATC ]
[+] EMBL CD066145 [ ACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACAGTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAAAATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGCTAAGCCACAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACTACAGACACCAGAAACTGGAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAAATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAATGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGC ]
[+] EMBL CD192108 [ CTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTG ]
[-] EMBL CD076787 [ AGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGACGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTATTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAGAATATATTTTGAAAT ]
[-] EMBL CD194072 [ GAGTGAAGACCTGGAGTCGCCCATCGGTGAATCCAAATCCCCGCAACCCCCAGCATCCTCATCAAACAACAAAATACGGGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGGCGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCT ]
[-] EMBL AI395485 [ TCTACAGAATTCCAAGAGACGGGAGAAGCATGAGTAACCTAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTATTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAG ATATATTTTGAAATTTTTCAAGTATATTCACTTACCGGTCCTTTAAAAAAAAAAAAAAAA]
[-] EMBL CD075595 [ TTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAG ATATATTTTGAAATTTTTCAAGTATATTCACTTACCGGTCCTTAACAAAtatacta ]
consensusID : consensus_10804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 929 fasta sequence
[CGGTCACGAGGGCAAAAACANAAAACACCGAAAGAAGTAGCTAAGTCCCAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACTACAGACACCAGAAACTGGAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAAATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAATGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGACGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTG-GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG-TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATAGACGGTATTTTCGTTTCTTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAGATATATTTTGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD083216 [CGGTCACGAGGGCAAAAACANAAAACACCGAAAGAAGTAGCTAAGTCCCAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACTACAGACACCAGAAACTGGAGAACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAGAAGCTGAAATACCACAAGCACCGAAAGAAGTAGCTAAGCCACAAACACCGAAAACCGAAGAACTAAAAATGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACTACACACACCAGTAGAAACTCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACTGCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTGGCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAAATACGGGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCACCAACTAGTGAAGCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGACGCACAAACTTTGAAGAACGATCTTACGCCCAGACCATCTACAGAATTGCCA ]
[-] EMBL AI395150 [ AAACTCTGAAGAACGATCTTACGCCCAGACCATNTACAGAATTCCCAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTCTTATTTGATTCAGAAAATTTTAACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATATAATGATCAAACAAATCAGCAAGCCAGATATATTTTGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD119610 [ ACCGTCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAA ]
[+] EMBL CD119540 [ CAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAA ]
[+] EMBL CD119913 [ CAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAA ]
[+] EMBL CD119522 [ CAGAGACGGGAGAAGCATGAGTAACCTAGTG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG TATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAA ]
[-] EMBL CD119436 [ AGAGACGGGAGAAGCATGAGTAACATAATG GAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACG AAATTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATAGACGGa ]
[-] EMBL CD119460 [ TGAGTAACCTAATGAGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTCACGATATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTTTAAGCTTAACCCCGGGTGATAGACGGT ]
consensusID : consensus_10804#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 872 fasta sequence
[TGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGAGGAATGAAACATTTTCCATGCAATAAAAATACTGATGATCCCGTGACCCATCGATTATCAATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCANATTCTACGAGCANACCGACTGGCAGTAAGCCAAGACATCANACACCGNCGNCGNCATCGCAACCGACTTTGACACNNACACCACCCGAGCTAGAACCAAAGTTTGAAAAAGCACCCACACCTATAGAAAAGAAAGTATCCGNCCCAAAAAACCCGAATGCTAACTGAAAACCAACCAGTAAAGAAACCAACGGCCGCCGGGNGGGNNGACAACCCAGCATCTGGGCAAATGTTAATAGGGGGGCGGGGNNNNNNNNAAACCCGAAATGGGTTCGAACCCGGGCCCTCAAACTGGAAAAGAAAACCCCAAAAATTGTTTTCCCCAAACCAAACCGAAACGGGGCCAGAAAATGTTCCCCCCCCCACTGGACCCGCACCCCGNNNNNNCCCGGGGGGGCTCTTCCCAAATTAATTTGGAACCCCCCCCCCGAGAAGTTTTTCCCCCCCCCCCCCGAAATAAACCCCCAAAAATTTTCCACCCGGGGAGGGTGGGCCCCCCAAAAAACCTTCC]
[+] EMBL CD081890 [TGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGAGGAATGAAACATTTTCCATGCAATAAAAATACTGATGATCCCGTGACCCATCGATTATCAATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTACTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACCAGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGTACCTGCTCAGAAAGATGCANATTCTACGAGCANACCGACTGGCAGTAAGCCAAGACATCANACACCGNCGNCGNCATCGCAACCGACTTTGACACNNACACCACCCGAGCTAGAACCAAAGTTTGAAAAAGCACCCACACCTATAGAAAAGAAAGTATCCGNCCCAAAAAACCCGAATGCTAACTGAAAACCAACCAGTAAAGAAACCAACGGCCGCCGGGNGGGNNGACAACCCAGCATCTGGGCAAATGTTAATAGGGGGGCGGGGNNNNNNNNAAACCCGAAATGGGTTCGAACCCGGGCCCTCAAACTGGAAAAGAAAACCCCAAAAATTGTTTTCCCCAAACCAAACCGAAACGGGGCCAGAAAATGTTCCCCCCCCCACTGGACCCGCACCCCGNNNNNNCCCGGGGGGGCTCTTCCCAAATTAATTTGGAACCCCCCCCCCGAGAAGTTTTTCCCCCCCCCCCCCGAAATAAACCCCCAAAAATTTTCCACCCGGGGAGGGTGGGCCCCCCAAAAAACCTTCC]
consensusID : consensus_10804#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[AAAATGAAAATAAACACAGTGATGATAATTACAATAGTAATAATAATAATACTCATGAAGATTATACTCAAGACCGTGACCCAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTTTAGACCACATGGTGGTAGGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTAGATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACGAAGAGAATTCAAGAAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAACAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCAT]
[-] EMBL CD197737 [AAAATGAAAATAAACACAGTGATGATAATTACAATAGTAATAATAATAATACTCATGAAGATTATACTCAAGACCGTGACCCAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTTTAGACCACATGGTGGTAGGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTAGATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACGAAGAGAATTCAAGAAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAACAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10804#0 AATACAATTGTTTGTATACTACTAAAGAACTTACATGTAAAGATCGTGTTAACCGTGACC 60
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 CAATAACACTTCAAGGAGATTTAGGTGAAGAACTAGACATGTNTAGACCACATGGTGGTA 120
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 GGCCAAGAAATAAAATTGATCGTAATATACATGTTTCAAGGTCTGATTCTATCAGTGGTA 180
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 GATGCGAATATAATGTAGAAAACAATTCAGTAAATCACTACAATGAAAGACAATGTAACG 240
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 AAGAGAATTCAAGATATTCTTATCTTGCTACAGATCCGATAACTCATTCACTGCCAGAAA 300
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 CAAAACTAGTCCGATCTCAGTCAGTACGACATTATAAAGAAGCATGGGCTACACATGATC 360
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 CAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGAGGAATGA 420
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 AACATTTTCCATGCAATAAAAATAGTGATGATCCCGTGACCCATCGATTATCAATTAATC 480
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 ATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGCTTCAAAATCTAGATTCAATA 540
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 CCCTGAGAGCGAATACTAATCCGTTACACATCAACAGAAAAATATATCTTCCGATCAATC 600
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 ACCAATTGAATTGAACGATGAAACATCGACAATCGGAGACTTCAATGAAGTGACTATAGG 660
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 CAATGTGTCTGCAGTTCCAGAGAATAGAAAATTACGAAGGGCTCTTCGAAATCCCATTAC 720
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 TGGTGAAGGAATGTGTGACAGTGATTATATTGACCTGCTTAAATTACCAAGTGAATATTA 780
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 CTTCCGAAGAAATCGAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACCACC 840
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 AGTACAACCATCATCAACAACTACACCTTCAACTAATACTGCTGTGTCTGTTAAAAAAGT 900
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 ACCTGCTCAGAAAGATGCAAATTCTACGAGCAAACCGACTGCAAGTAAGCCAAGACATCA 960
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 AACACCGCCGCCGCCATCGCAACCGACTTTGACACAACAACCACCGAAGCTAGAACCAAA 1020
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 AGTTGAAAAAAGCACCCCACAACCTATAGAAAAGAAAGTTATCCGCCCAAAAAAACCCGA 1080
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 GATGCTAACTGAAAAACAACCAGTTAAAGAAAACAAACAGCCGGTCGGTAGTGTAACACA 1140
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 GTCACAGCCAATTACTGAGACACAATTGTCTACAAAAGAGGCGGAGCCACAAACACCGAA 1200
consensus_10804#1 ------------------------------------------------------------
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 AATGGTTGCAGAACCACAGACACTAGAGACTGAAAAACAGAAAACACCGAAAGAAGTAGC 1260
consensus_10804#1 ----------------CGGTCACGAGGG---CAAAAACANAAAACACCGAAAGAAGTAGC 41
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 ------------------------------------------------------------
consensus_10804#0 TAAGCCACAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACCACA 1320
consensus_10804#1 TAAGTCCCAGACACCAAAAACCGAGAAACCGGAGGCACCAAAAGAAACTGTAAAACTACA 101
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 --TGATCCAATCGGTTATATGCACAGAACTGGTACATCATATAAGACGGATAAAGTTCGA 58
consensus_10804#0 GACACCAGAAACTGAAGA-ACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAG 1379
consensus_10804#1 GACACCAGAAACTGGAGA-ACCGCAAACGCCGAAGGGAGCTACAAATCCACAGAAACTAG 160
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 GGAATGAAACATTTTCCATGCAATAAAAATACTGATGATCCCGTGACCCATCGATTATCA 118
consensus_10804#0 AAGCTGAGATACCACAAGCACCGAAAGAAGTAGCTAAGCCACA--AACACCGAAAACCGA 1437
consensus_10804#1 AAGCTGAAATACCACAAGCACCGAAAGAAGTAGCTAAGCCACA--AACACCGAAAACCGA 218
consensus_10804#3 -----------------------------------AAAATGAA--AATAAACACAGTGAT 23
consensus_10804#2 ATTAATCATCATCGGCAGCAGCATCGTCCCCAGTTGACATATACTGGTGAAGGAATGTGT 178
* * *
consensus_10804#0 AGAACTAAAAACGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACT 1497
consensus_10804#1 AGAACTAAAAATGCCAAAAGAAATAGTAATTCCAGAGACATCAGGAAAGACTGCGGAACT 278
consensus_10804#3 GATAATTACAATAGTAATAATAATAATACTCATGAAGATTATACTCAAGACCGTGACCCA 83
consensus_10804#2 GACAGTGATTATATTGACCTGCTTA--AATTACCAAGTGAATATTACTTCCGAAGAAATC 236
* * * * * ** * * ** * * *
consensus_10804#0 ACA-CACACCAGTAGAAAC-TCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACT 1555
consensus_10804#1 ACA-CACACCAGTAGAAAC-TCCGATAACTCCCGCTAGTCATACTTTAGAAGAGTCAACT 336
consensus_10804#3 ATAACACTTCAA-GGAGAT-TTAGGTGAAGA--ACTAGACATG-TTTAGACCACATGGTG 138
consensus_10804#2 GAGACACTTTGTCGTCGACATTGAATATCCATCCACATTCACC-ACCAGTACAACCATCA 295
*** * * * * ** ** *
consensus_10804#0 GCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTG 1615
consensus_10804#1 GCAGAAACAAAGTCAGCCGGAAAGCCTGTACCGCAATCGTTGAGTGAAGAACTGGAGTTG 396
consensus_10804#3 GTAGGCCAAGAAATAA---AATTGATCGTAATATACATGTT---TCAAGGTCTG-ATTCT 191
consensus_10804#2 TCAACAACTACACCTTC--AACTAATACTGCTGTGTCTGTTAAAAAAGTACCTG--CTCA 351
* * * *** * *** *
consensus_10804#0 GCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAA-ATACG 1674
consensus_10804#1 GCCATCGGTGAATCCAAATCCCCGCAACCCCCAACATCCTCATCAAACAACAAA-ATACG 455
consensus_10804#3 ATCAGTGGTAGATGCGAATA--TAATGTAGAAAACAATTCAGTAAATCACTACA-ATGAA 248
consensus_10804#2 GAAAGATGCANATTCTACGAG-CANACCGACTGGCAGTAAGCCAAGACATCANACACCGN 410
* * ** * * ** * ** * * *
consensus_10804#0 GGACGGGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCA--CCAACTAGTGAA 1732
consensus_10804#1 GGACGAGATGAGCGAGGACTTACACAGTCCCGCTGTCCAGTCCCCA--CCAACTAGTGAA 513
consensus_10804#3 AGACAATGTAACGAAGAGAATTCAAGAAGATATTCTTATCTTGCTA--CAGATCCG-ATA 305
consensus_10804#2 CGNCGNCATCGCAACCGACTTTGACACNNACACCACCCGAGCTAGAACCAAAGTTTGAAA 470
* * * * * * * * *
consensus_10804#0 GCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGAC-GCACAA-ACTT-TGAAG 1789
consensus_10804#1 GCGAATTCATTTGTGGACAACAAGATGTCACGCCTGTCTGAC-GCACAA-ACTT-TGAAG 570
consensus_10804#3 ACTCATTCACTGCCAGA-AACAAAACTAGTCCGATCTCAGTCAGTACGACATTA-TAAAG 363
consensus_10804#2 AAGCACCCACACCTATAGAAAAGAAAGTATCCGNCCCAAAAAACCCGAATGCTAACTGAA 530
* ** * ** * * * * * *
consensus_10804#0 AACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACC 1849
consensus_10804#1 AACGATCTTACGCCCAGACCATCTACAGAATTGCCAGAGACGGGAGAAGCATGAGTAACC 630
consensus_10804#3 AAGCAT------------------------------------------------------ 369
consensus_10804#2 AACCAACCAGTAAAGAAACCAACGGCCGCCGGGNGGGNNGACAACCCAGCATCTG-GGCA 589
** *
consensus_10804#0 TAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTC 1909
consensus_10804#1 TAGTGGAATAAATGTTCAACTGGCTTGGTAAATCTGATGGTTGCTGACTGGATTATTCTC 690
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 AATGTTAATAGGGGGGCGGGGNNNNNNNNAAACCCGAAATGGGTT--CGAACCCGGGCCC 647
consensus_10804#0 ACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTT 1969
consensus_10804#1 ACGTATTTAGTTAAAGAGAACTGTGCTTCTTTTAGCACGTTCCGTTCTCAATTTTCTTTT 750
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 TCAAACTGGAAAAGAAAACCCCAAAAATTGTTTTCCCCAAACCAAACCGAAACGGGGCCA 707
consensus_10804#0 TAAGCTTAACCCCGGGTGATGGACGGTATTTTCGTTTATTATTTGATTCAGAAAATTTTA 2029
consensus_10804#1 TAAGCTTAACCCCGGGTGATAGACGGTATTTTCGTTTCTTATTTGATTCAGAAAATTTTA 810
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 GAAAATGTTCCCCCCCCCACTGGACCCGCACCCCGNNNNNNCCCGGGGGGGCTCTTCCCA 767
consensus_10804#0 ACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATAT 2089
consensus_10804#1 ACTTTCGGCATAATGAGAATGGATCATGACTTTCGTGTAACGTTTCCGATATTTCGATAT 870
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 AATTAATTTGGAACCCCCCCCCCGAGAAGTTTTTCCCCCCCCCCCCCGAAATAAACCCCC 827
consensus_10804#0 AATGATCAAACAAATCAGCAAGCCAGATATATTTTGAAATTTTTCAAGTATATTCACTTA 2149
consensus_10804#1 AATGATCAAACAAATCAGCAAGCCAGATATATTTTGAAA------AAAAA---------- 914
consensus_10804#3 ------------------------------------------------------------
consensus_10804#2 AAAAATTTTCCACCCGGGGAGGGTGGGCCCCCCAAAAAACCTTCC--------------- 872
consensus_10804#0 CCGGTCCTTTAAAAAAAAAAAAAAAA 2175
consensus_10804#1 ----------AAAAAAAAAAAAAAA- 929
consensus_10804#3 --------------------------
consensus_10804#2 --------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||