These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1058 fasta sequence [CCTTCGAGCCAAAAATTCGGCACGAGGTGAAGCTGACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCATGATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTG-AAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTG-AAACATANNTGT-ACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGNAATTTTCGCCTCTTTCGTCTTGNCTATTCAGNATTTTGNGCATTAAATATCANTGTTATTTACACAGATATTCTGATATTAAATCGATCATACCTACTCTTTCTATATGGCCCTTGGAATCAGTTGATCCGGCTTTTGTCTGTTCGGGAGGTCAATTTTTTAATGATTAAGTTGGGGGGGGGGGGTTTTGTTTTTTGAATTCAAATTGGCGTCCCAAAAGAGCCTTTATAAAACCTC] [+] EMBL CD081825 [CCTTCGAGCCAAAAATTCGGCACGAGGTGAAGCTGACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCATGATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTG AAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTG AAACATANNTGT ACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGNAATTTTCGCCTCTTTCGTCTTGNCTATTCAGNATTTTGNGCATTAAATATCANTGTTATTTACACAGATATTCTGATATTAAATCGATCATACCTACTCTTTCTATATGGCCCTTGGAATCAGTTGATCCGGCTTTTGTCTGTTCGGGAGGTCAATTTTTTAATGATTAAGTTGGGGGGGGGGGGTTTTGTTTTTTGAATTCAAATTGGCGTCCCAAAAGAGCCTTTATAAAACCTC] [+] EMBL CD114133 [ TTGGCTGAAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTGCTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTCTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTCGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATTATTGCTGAAAACATA ATGTAACTGTTGATTCATGAACGA ] consensusID : consensus_10805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence [CAGAGGGGATCCCTGCTGGCTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCAAAGTGTCGTACAACAGAAGCGCTCTTATTGGTTATCCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGC-TTTTTTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAAAACTGTTGAAACTGTTATAACACTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATAGCTCACAAACGGAAGAGACTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGATGTTTTGATCGTTCATGAGCCTGAACAGGGAACACCCACACCACTCTGTCCCTTGACTATTANAAACGATTCTGCTAATGATATTACTGACCAGTCTTCATTTTTATCATCACAACCACCTAAACGTCCTTCTTTGGAAGCTTTCAGTATGGGTATACAACCTTATAGGCCATTTGAAAATCTTCCTGGTGTGCACGGTGGTTATCAACGTGTACTCAACTCACTCAAGAATTCACGTGAGTCTTTAGCATCTCATAGTAATGTATCAGATCCCAAAAATATACAAGATAATGATTATCAGTCGTCATCAGTTCGACTGAGTCGTCACAATAGCAATCACTCCTCTTGTAAAAGCAATCGATATTAAAAAGAATATATACCATTCACTTTTGAGTTTCATTTTATATCCTTCAGTGTTTAAAAACTGAAAAATGTATATATGTGTAAATTATTCTACTCACATTTTAACAGCACGCGTTCCATATATACATGTCCATTGATATCTCTGACTTTGATTTTATTCATTTTTCTGTAAATTAATAAATTCACCTAATTGTTAATATTCGTTTGAAAGTGCCATGCATGTCAATTGTTATTAAACAT] [+] EMBL CD114390 [CAGAGGGGATCCCTGCTGGCTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCAAAGTGTCGTGCAACAGAAGCGCTCTTATTGGTTATCCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGC TTTTTTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAAAACTGTTGAAACTGTTATAACACTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATAGCTCACAAACGGAAGAGTCTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGATGTTTTGATCGTTCATGAGCCTGAACAGGGAAC ] [-] EMBL CD179539 [ GCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCAAAGTGTCGTACAACAGAAGCGCTCTTATTGGTTATCCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGC TTTATTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATG ] [+] EMBL CD153136 [ TACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCAAAGTGTCGTACAACAGAAGCGCTCTTATTGGTTATCCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGCTTTTTTTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAAAACTGTTGAAACTGTTATAACACTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATAGCTCACAAACGGAAGAGACTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGATGTTTTGATCGTTCATGAGCCTGAACAGGGAACACCCACACCACTCTGTCCCTTGACTATTANAAACGATTCTGCTAATGATATT ] [-] EMBL CD179451 [ TTAGGGATGATTATTTATATTTGAAGTGTCCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGC TTTTTTGTCTTGCGAATCGTCTGGGAAATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAAAACTGTTGAAACTGTTATAACACTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATAGCTCACAAACGGAAGAGACTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGATGTTTTGATCGTTCATGAGCCTGAACAGGGAACACCCACACCACTCTGTCCCTTGACTATTAGAAACGATTCTGCTAATGATATTACTGACCAGTCTTCATTTTTATCATCACAACCACCTAAACGTCCTTCTTTGGAAGCTTTCAGTATGGGTATACAACCTTATAGGCCATTTGAAAATCTTCCTGGTGTGCACGGTGGTTATCAACGTGTACTCAACTCACTCAAGAATTCACGTGAGTCTTTAGCATCTCATAGTAATGTATCAGATCCCAAAAATATACAAGATAATGATTATCAGTCGTCATCAGTTCGACTGAGTCG ] [-] EMBL CD077047 [ ttcCCCAAAAATATACAAGATAATGATTATCAGTCGTCATCAGTTCGACTGAGTCGTCACAATAGCAATCACTCCTCTTGTAAAAGCAATCGATATTAAAAAGAATATATACCATTCACTTTTGAGTTTCATTTTATATCCTTCAGTGTTTAAAAACTGAAAAATGTATATATGTGTAAATTATTCTACTCACATTTTAACAGCACGCGTTCCATATATACATGTCCATTGATATCTCTGACTTTGATTTTATTCATTTTTCTGTAAATTAATAAATTCACCTAATTGTTAATATTCGTTTGAAAGTGCCATGCATGTCAATTGTTATTAAACAT] consensusID : consensus_10805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1016 fasta sequence [GGTTTAATGCGACTTCAGAATGAATTAGATGAAACTAAAGTTATTTTACATAATACATTAGAATCGTTATTGTCTAGAGGTGAAAAACTTGATGATTTAGTTGAACGATCCGAGGGTCTTAGCTTACAATCAAAGATGTTTTATACTACAGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTAACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAATTTTCGCCTCTTTCGTCTTTGTCTATTCAGTATTTTGTGCATTAAAATATCAGTGTATATTTACACAGAATATTCTGATTATTAATCGATTCAATACCTACTTCTCTCTATTATTGTCCCTCTGTAGTTCATGTTGATTCGTGGTTCTGTTTTGTTTGTGGAG-TTTCAA-TTTTTTAT-AATTGATTTCAATGTT-TGTGGTTGGGGTTTTTTGTATTTGGAATATCACAGATTTGACGTTTACAAGATGATCGTTCATTAAATCAAATACTCTAACAT] [+] EMBL CD154741 [GGTTTAATGCGACTTCAGAATGAATTAGATGAAACTAAAGTTATTTTACATAATACATTAGAATCGTTATTGTCTAGAGGTGAAAAACTTGATGATTTAGTTGAACGATCCGAGGGTCTTAGCTTACAATCAAAGATGTTTTATACTACAGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTC ] [+] EMBL CD078521 [ ATGAACCTAAAGTTATTTTACATAATACATTAGAATCGTTATTGTCTAGAGGTGAAAAACTTGATGATTTAGTTGAACGATCCGAGGGTCTTAGCTTACAATCAAAGATGTTTTATACTACAGCGAAGAAAACAAACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGCCCTATG ] [-] EMBL CD166856 [ gaccatTCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATT CGCTACTTGA TTTAACATGAT ATTTTTTG TGTACTGAtg ] [-] EMBL CD166663 [ CACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTAC TGATTTTAACATGATAATTTTTTGTTGTACTGATGC GTCCGg ] [+] EMBL CD141315 [ AGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTTACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTAACTGTTGATTCATGCACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAATTNTCGCgt ] [-] EMBL CD201741 [ TTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGAACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTAACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAATTTTCGCCTCTTTCGTCTTTGTCTATTCAGTATTTTGTGCATTAAAATATCAGTGTATATTTACACAGAATATTCTGATTATTAATCGATTCAATACCTACTTCTCTCTATTATTGTCCCACTGTAGTTCATGTT ] [+] EMBL CD128156 [ GATATTAATAAGCTCATCACAATTTACTTTGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTAACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAATTTTCGCCTCTTTCGTCTTTGTCTATTCAGTATTTTGTGCATTAAAATATCAGTGTATATTTACACAGAATATTCTGATTATTAA ] [-] EMBL CD073404 [ CTATTCAGGATTTTGTGCATTAAAATATCAGTGTATATTTACACAGAATATTCTGATTATTAATCGATTCAATACCTACTTCTCTCTATTATTGTCCCTCTGTAGTTCATGTTGATTCGTGGTTCTGTTTTGTTTGTGGAGATTTCAA TTTTTTAT AATTGATTTCAATGTT TGTGGTTGGGGTTTTTTGTATTTGGAATATCACAGATTTGACGTTTACAAGATGATCGTTCATTAAATCAAATACTCTAACAT] [+] EMBL CD125738 [ AATCGATTCAATACCTACTTCTCTCTATTATTGTCCCTCTGNAGNTCATGTTGATTCGTGCTTCTGTTCTGTTCGTGGAG TTTCAATTTTTTTAT AATTGATTTCA ] [-] EMBL CD075549 [ A TTTTTTATAAATTGATTTCAATGTTGTG GGTTGGGGTTTTTTGTATTTGGAATATCACAGATTTGACGTTTACAAGATGATCGTTCATTAAATCAAATACTCTAACAT] consensusID : consensus_10805#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 619 fasta sequence [ATTTTACGGAATTAGAAGAGGAATCTCTTACTACCAGCTCCCAAAATCCTAGGAGCCGAAAGCCTGTTTATGGAAAGCGCTATCATGAAGCTGACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCAT-GATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAA-ATGCTGCGTTATACTGTAAAGTCTTCATCGTT-CAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGNGATTCATTCGATCAGTAATATTGTGTTATACTAC] [+] EMBL CD078950 [ATTTTACGGAATTAGAAGAGGAATCTCTTACTACCAGCTCCCAAAATCCTAGGAGCCGAAAGCCTGTTTATGGAAAGCGCTATCATGAAGCTGACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCAT GATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAA ATGCTGCGTTATACTGTAAAGTCTTCATCGTT CAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACATAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCTTCGNGATTCATTCGATCAGTAATATTGTGTTATACTAC] [+] EMBL CD157317 [ ACTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCAT GATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAATATGCTGCGTTATACTGTAAAGTCTTCATCGTTGTAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTGGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACGTAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGA ] [-] EMBL CD157079 [ CTTTGACAATAAGTATAGACCCGGAAGGATATCACGAGAACTACGAAAGGCACGAAATCTGAGTAGTCATAGATATTCCAATCCACAGTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGATGCTGTTGGTGCCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAA ATGCTGCGTTATACTGTAAAGTCTTCATCGTT CAG ] [+] EMBL BG932534 [ tAGGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCAT GATATTCCAATCCACATTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTTTAGAATCTGAACGCGAAGAAAACAAACAA ATGCTGCGTTATACTGTAAAGTCTTCATCGTT CAGTTCACCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTAATCAATAGAAAATTTGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAATTCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACct ] consensusID : consensus_10805#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TNACATAATACATTAGAATCGNTATTGTCTAGAGGTGAAAAATTGGATGATTAGTGGAACGATCCGCAGGTCTTAGCTTACAATCAAAGATGTNTTATACTACAGGGANGAAAACAANCAAATGCTGCGTTATGNTGTAAAGTCTTCATCGTNCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGGTGGAATCAGNTATTANACCTAATCAATAGAAAATTGGACCATACATAATTTCTTTCCTACTNGAATCACTTGGTATTCGTCCAGAATTCTAAGTCGATC] [+] EMBL SM920 [TNACATAATACATTAGAATCGNTATTGTCTAGAGGTGAAAAATTGGATGATTAGTGGAACGATCCGCAGGTCTTAGCTTACAATCAAAGATGTNTTATACTACAGGGANGAAAACAANCAAATGCTGCGTTATGNTGTAAAGTCTTCATCGTNCAGTTCACCTCTGCTCATTTCTCTTCATGTCCGGTGGAATCAGNTATTANACCTAATCAATAGAAAATTGGACCATACATAATTTCTTTCCTACTNGAATCACTTGGTATTCGTCCAGAATTCTAAGTCGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10805#0 -----------------------------------------------CCTTCGAGCCAAA 13 consensus_10805#3 ATTTTACGGAATTAGAAGAGGAATCTCTTACTACCAGCTCCCAAAATCCTAGGAGCCGAA 60 consensus_10805#2 ------------------------------------------------------------ consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 ------------------------------------------------------------ consensus_10805#0 AATTCG----------GCACGAG-GTGAAGCTGACTTTGACAATAAGTATAGACCCGGAA 62 consensus_10805#3 AGCCTGTTTATGGAAAGCGCTATCATGAAGCTGACTTTGACAATAAGTATAGACCCGGAA 120 consensus_10805#2 ------------------------------------------------------------ consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 --------------------------------------------CAGAGGGGATCCCTGC 16 consensus_10805#0 GGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCATGATATTCCAATCCACA 122 consensus_10805#3 GGATATCACGAGAACTACGAAAGGCACTAAATCTGAGTAGTCATGATATTCCAATCCACA 180 consensus_10805#2 -------------------GGTTTAATGCGACTTCAGAATGAATTAGATGAAACTAAAGT 41 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 TGGCTGGCTGAAAAAAGCTGCTGTTGGTGGCTGTTTACTGATGTTTGATTCAGA-CAACA 75 consensus_10805#0 TTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCT-GCTG--T-T 178 consensus_10805#3 TTTATCGTATGAGAACATTGGGGTACCCTCCTGGTTGGCTGAAAAAAGCT-GCTG--T-T 236 consensus_10805#2 TATTTTACAT-AATACATTAGAAT-CGTTATTGTCTAGAGGTGAAAAACTTGATGATT-T 98 consensus_10805#4 ----TNACAT-AATACATTAGAAT-CGNTATTGTCTAGAGGTGAAAAATTGGATGATT-- 52 consensus_10805#1 CGGACAGTTT-AGAATCTGAACGCAAAGTGTCGTACAACAGAAGCGCTCTTATTGGTTAT 134 * * * * * * * * ** * consensus_10805#0 GGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTT---TAGAATCTGAACG- 234 consensus_10805#3 GGTGGCTGTTTACTGATGTTTGATTCAGACAACACGGACAGTT---TAGAATCTGAACG- 292 consensus_10805#2 AGTTGAACGATCCGAGGGTCTTAGCTTACAATCAAAGATGTTT---TATACTACA---G- 151 consensus_10805#4 AGTGGAACGATCCGCAGGTCTTAGCTTACAATCAAAGATGTNT---TATACTACA---G- 105 consensus_10805#1 CCTGGATTTAATGTCGAGTTGGATCGCTCAGTTAGGGATGATTATTTATATTTGAAGTGT 194 * * ** * * ** * ** * * * consensus_10805#0 ----CGAAGAAAACA-AACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCA 289 consensus_10805#3 ----CGAAGAAAACA-AACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCA 347 consensus_10805#2 ----CGAAGAAAACA-AACAAATGCTGCGTTATACTGTAAAGTCTTCATCGTTCAGTTCA 206 consensus_10805#4 ----GGANGAAAACA-ANCAAATGCTGCGTTATGNTGTAAAGTCTTCATCGTNCAGTTCA 160 consensus_10805#1 CCGCCGATGCAAAAACATCATATGCTGGATAATTTCTATGCTTTTTTGTCTTGCGAATCG 254 ** * *** * * ** ****** * ** * ** ** * * ** consensus_10805#0 CCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTA--ATCAATAGAA 347 consensus_10805#3 CCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTA--ATCAATAGAA 405 consensus_10805#2 CCTCTGCTCATTTCTCTTCATGTCCGTTGGAATCAGGTATTAAACCTA--ATCAATAGAA 264 consensus_10805#4 CCTCTGCTCATTTCTCTTCATGTCCGGTGGAATCAGNTATTANACCTA--ATCAATAGAA 218 consensus_10805#1 TCTGGGAA-ATCCAATATTACAAGCACAAATGGCAACCACTCACCCTGCGGTAAAAAGAA 313 ** * ** * * * ** * * *** * ** **** consensus_10805#0 AATT--TGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAAT 405 consensus_10805#3 AATT--TGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAAT 463 consensus_10805#2 AATT--TGAACCATACATAATTTCTTTCCTACTTGAATCACTTTGTATTCGTTCCAGAAT 322 consensus_10805#4 AATT---GGACCATACATAATTTCTTTCCTACTNGAATCACTTGGTATTCGT-CCAGAAT 274 consensus_10805#1 AACTGTTGAAACTGTTATAACA-CTTTCCGATTCGGAGTCTGGTGAAACTAATTCAAATA 372 ** * * * * **** ****** * * * * * * ** * consensus_10805#0 TCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACA 465 consensus_10805#3 TCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACA 523 consensus_10805#2 TCTAAGTCGATCTTTGTTTGTTTTTTTAATTTCCTTTGTATGACTTCAACGTCTATCACA 382 consensus_10805#4 TCTAAGTCGATC------------------------------------------------ 286 consensus_10805#1 GCTCA--CAAAC---GGAAGAGACTCTAGATGAAGCTGAAGAACTTCATTCAAATCCAGA 427 ** * * * * consensus_10805#0 TAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCT-T 524 consensus_10805#3 TAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCT-T 582 consensus_10805#2 TAATCGAACACCTGTTTATCAATAAGTTTGATTATCTTTGAAATTGTATTTGTCTTCT-T 441 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 TGTTTTGATCGTTCATGAGCCTGAACAGGGAACACCCACACCACTCTGTCCCTTGACTAT 487 consensus_10805#0 CGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTT 584 consensus_10805#3 CGNGATTCATTCGATCAGTAATATTGTGTTATACTAC----------------------- 619 consensus_10805#2 CGTGATTCATTCGATCAGTAATATTGTGTTATACTACTAATTTATTTTGGTTAAACATTT 501 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 TANAAACGATTCTGCTAATGATATTACTGACCAGTCTTCATTTTTATCATCACAACCACC 547 consensus_10805#0 ACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGA 644 consensus_10805#3 ------------------------------------------------------------ consensus_10805#2 ACGCTACTTGATTTTAACATGATAATTTTTTGTTGTACTGAATCTTGTCCGAAACTTTGA 561 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 TAAACGTCCTTCTTTGGAAGCTTTCAGTATGGGTATAC--AACCTTATAGGCCATTTGAA 605 consensus_10805#0 ACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTT 704 consensus_10805#3 ------------------------------------------------------------ consensus_10805#2 ACGTCGACCAATTTGAGTTGTTGACTATGTTGATATTAATAAACTCATCACAATTTACTT 621 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 AATCTTCCTGGTGTGCACGGTGGTTATCAACGTGTACTCAACTCACTCAAGAATTCACGT 665 consensus_10805#0 TGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAA-CATANNTGT 763 consensus_10805#3 ------------------------------------------------------------ consensus_10805#2 TGTTCAGTCCTATGTGTTGATTTATTTTAATTCTTCCATAATTGCTGAAAACATAATGTA 681 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 GAGTCTTTAGCATCTCATAGTAATGTATCAGATCCCAAAAATATACAAGATAATGATTAT 725 consensus_10805#0 ACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGNAA 823 consensus_10805#3 ------------------------------------------------------------ consensus_10805#2 ACTGTTGATTCATGAACGATGTATATACATATTTATTATGGTTATCATATCTTATGGAAT 741 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 CAGTCGTCATCAGTTCGACTGAGTCGTCACAATAGCAATCACTCCTCTTGTAAAAGCAAT 785 consensus_10805#0 TTTTCGCCTCTTTCGTCTTGNCTATTCAGNATTTTGNGCATTAAATATCANTGTTATTTA 883 consensus_10805#3 ------------------------------------------------------------ consensus_10805#2 TTTCGCCTCTTTCGTCTTTGTCTATTCAGTATTTTGTGCATTAAAATATCAGTGTATATT 801 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 CGATATTAAAAAGAATATATACCATTCACT--TTTGAGTTTCATTTTATATCCTTCAGTG 843 consensus_10805#0 CACAGATATTCTGATATTAAATCGATCATACCTACTCTTTCTATATGGCCCTTGGAATCA 943 consensus_10805#3 ------------------------------------------------------------ consensus_10805#2 TACACAGAATATTCTGATTATTAATCGATTCAATACCTACTTCTCTCTATTATTGTCCCT 861 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 TTTAAAAACTGAAAAATGTATATATGTGTAAATTATTCTACTCACATTTTAACAGCACGC 903 consensus_10805#0 GTTGATCCGGCTTTTGTCTGTTCGGGAGGTCAATTTTTTAATGATTAAGTTGGGGGGGGG 1003 consensus_10805#3 ------------------------------------------------------------ consensus_10805#2 CTGTAGTTCATGTTGATTCGTGGTTCTGTTTTGTTTGTGGAGTTTCAATTTTTTATAATT 921 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 GTTCCATATATACATGTCCATTGATATCTCTGACTTTGATTTTATTCATTTTTCTGTAAA 963 consensus_10805#0 GGGTTTTGTTTTTTGAATTCAAATTGGCGTCCCAAAAGAGCCTTTATAAAACCTC----- 1058 consensus_10805#3 ------------------------------------------------------------ consensus_10805#2 GATTTCAATGTTTGTGGTTGGGGTTTTTTGTATTTGGAATATCACAGATTTGACGTTTAC 981 consensus_10805#4 ------------------------------------------------------------ consensus_10805#1 TTAATAAATTCACCTAATTGTTAATATTCGTTTGAAAGTGCCATGCATGTCAATTGTTAT 1023 consensus_10805#0 ----------------------------------- consensus_10805#3 ----------------------------------- consensus_10805#2 AAGATGATCGTTCATTAAATCAAATACTCTAACAT 1016 consensus_10805#4 ----------------------------------- consensus_10805#1 TAAACAT---------------------------- 1030 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||