These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1552 fasta sequence [CCTCGAGGGCCANAATTCGGTACGAGGCGTCATGATGCGGTTACCATAGACACCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAACGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGT-AAAAAATAAAAAATCAAGT-AAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAAT-CCATGGCTGTTGGTATTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCA-GATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATTTTATCGCGGAAAAAAAAAAAAAAAAA] [+] EMBL CD082452 [CCTCGAGGGCCANAATTCGGTACGAGGCGTCATGATGCGGTTACCATAGACACCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAACGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGANATGAGATTATTATTAGACT ] [-] EMBL CD155012 [ AGGTGGTGAGGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAACGGATGCAGAACGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCGGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTAT ] [-] EMBL CD116220 [ AGTGCTTTCGGAATTGAATNTAGGTGATTNTGTCATCAAGATCAACCACAGACGTNTGCTTGATGGACTGTNTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAGGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAAATAAAAAATCAAGTAAAAAAAGATAAGAA ] [+] EMBL CD201615 [ CGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCANATAGTCCAAGTGCAGAATTGACTGGTTTCCATGAAACTGACCAAAACTCCTCTGT AAAAAATAAAAAATCAAGT AAAAAAGATAAGAAAGCCAAAGAACAGGTAGAGGAGGAATCTGTTACATCTGGCGAAT TCATGGCTGTTGGTATTGTACCTGGTGGCGGC ] [-] EMBL CD177945 [ TCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACACTCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGT AAAAAATAAAAAATCAAGT AAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATACCATGGCTGT ] [-] EMBL CD116539 [ ATGAGCATCTGAATAATCAACCATCAGCTAAAGTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAGCGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAAATGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGT AAAAAATAAAAAATCAAGT AAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAAT CCATG ] [-] EMBL CD168922 [ CGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGggg ] [-] EMBL CD074727 [ TTCCAATGAAACTGACCTAAACTCCTCTGT AAAAAATAAAAAATCAAGT AAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAAT CCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCA GATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTT ] [-] EMBL CD076050 [ TGTAGCTGGTGGCGGCCAATACGATGGTTTAGTGGGAATGTTTAGTTTTTTTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTTTTCA GATAAGAACAAATGTAGGGTGCGCCCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTTTTATCATGCAACGTTTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGGTCCAATGTCGCATAAAAATCCCCCCCAACTATTGGATCAACTCCAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTTTGGGAGAAAGTGAATTAGCTCGTAACCCTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACCCAGATTTTGTGAATAAGATCAAAAAAGTACTATTTACCAAATCCCATAAATAAAACTTTGTT ] [-] EMBL CD075617 [ CGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCA GATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTTTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATTTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATT ] [-] EMBL AI395126 [ AGTGCC TGTGT GG TCTAGTTTT GGGTTGAA GGCTATTAGC ATTAAAGGAGCTTTGAGT ATT TTCAGGATAGGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGAGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATTTTATCGCGGAAAAAAAAAAAAAAAA ] [-] EMBL AI395425 [ cCACCTTTTATGGGATGCAAACTTTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATTTTATCGCGGAAAAAAAAAAAAAAAAA] [+] EMBL BG932187 [ ACGGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTGGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAATACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACG ] consensusID : consensus_10814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 756 fasta sequence [AAAATCACAGAGCAAATGGCCAAGTCATCCATCAAACAGTGTGAAGTGAAGTACAATGTAAAAACTCCGAAGGGAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAGTACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACA-CCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAGCGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCAT] [+] EMBL CD147622 [AAAATCACAGAGCAAATGGCCAAGTCATCCATCAAACAGTGTGAAGTGAAGTACAATGTAAAAACTCCGAAGGGAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAGTACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACA CCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAGCTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTG ] [+] EMBL CD169613 [ CCATCAAACAGTGTGAAGTGAAGTACAATGTAAAAACTCCGAAGGGAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAGTACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACA CCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATA ] [-] EMBL CD097287 [ AGTGAAGTACAATGTAAAAACTCCCAAGGAAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAGTACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACA CCCCTGTTTTTGAGTTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGC ] [-] EMBL CD122964 [ ACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACACCCCCTGTTTTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAGCGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACAAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTTTGGATCTCGTTGAACGTCTCGAATCAGATGAGCAT] [+] EMBL AI977135 [ GAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATATTGCTGGAGATCATGGGCTAATGCTAGCGGATGCAGAATGCCTTCGAATAATGTACGAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCTCAATTGACAAACTAGACAAGATTCCTTGTGAAGATGTCAGACGA ] consensusID : consensus_10814#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [AAGNAATTTCGGCACGAGGGAAAATCAAGTAAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCAGATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCANATACCATANATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTATTTNNACCATACATT] [+] EMBL CD082004 [AAGNAATTTCGGCACGAGGGAAAATCAAGTAAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGCTTTGAGTAATTCTTCAGATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCCAAACTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCANATACCATANATAAAACTTTGTTACATACCGTATTTGGCTGTGTGATGTTTTTCTGAATTTGTGCATCTCATAATCTGGTATTATTTGACGTATTTNNACCATACATT] [+] EMBL CD144204 [ CAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCANATACCATAAATAAAACTTTGTTACAT ] consensusID : consensus_10814#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [CGAGGCCAGAATTCGGCACGAGGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGNNNNNNNNAATTCTTCAGATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTAC] [+] EMBL CD080895 [CGAGGCCAGAATTCGGCACGAGGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTTCTGGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATTAGCAATTAAAGAAGNNNNNNNNAATTCTTCAGATAAGAACAAATGTAGCGTGCGACCAACTGAAACTGAAGTCATGGTTGCTGGAGCTCATAAGGGTCTTATCATGCAACGTCTACAATGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTGTGAATCAACTGGTATTCCGTTGGCCGTTGTTCTGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAGAATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTAC] consensusID : consensus_10814#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [CGCGGCCAAGAATTCGGTACGAGGCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATNCCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTT] [+] EMBL CD077846 [CGCGGCCAAGAATTCGGTACGAGGCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATNCCGGTGTTATTTACGAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGTTCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATAAGAAAGCCAAAGAACAGTTAGAGGAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGGTAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTAGTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 CCTCGAGGGCCANAATTCGGTACGAGGCGTCATGATGCGGTTACCATAGACACCCCTGTT 60 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 TTTGAGCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGAT 120 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 CTTCAGGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCC 180 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 CGTTATGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTAC 240 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 CGGCGTGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTC 300 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 GATATTGCTGGAGATCATGGGCTAATGCTAACGGATGCAGAATGCCTTCGAATAATGTAC 360 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 GAAGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTG 420 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 CTTGATGGACTGTTTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCC 480 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 TCAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGAC 540 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 AAAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGT 600 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 TTGGATCTCGTTGAACGTCTCGAATCAGATGAGCATCTGAATAATCAACCATCAGCTAAA 660 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 GTCGCCCTTCAGGAAATGAGATTATTATTAGACTATTGTAAAGCACTTGGGATCCAAGAG 720 consensus_10814#1 ------------------------------------------------------------ consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 CGAATTAGTTTCGATTTAAGTCTAGCGCGCGGGTTGGATTACTATACCGGTGTTATTTAC 780 consensus_10814#1 -------------------------------------------------------AAAAT 5 consensus_10814#2 ------------------------------------------------------------ consensus_10814#3 -----------------------------------CGAGGCCAGAATTCGGCACGAGGGT 25 consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 GAAGCTGTTTTGAAAGGTTTCACTTACAATCCAAATAGTCCAAGTGCAGAATTGACTGGT 840 consensus_10814#1 CACAGAGCAAATGGCCAAGTCATCCATCAAACAGTGTGAAGTGAAGTACAATGTAAAAAC 65 consensus_10814#2 ------------------AAGNAATTTCGGCACGAGGGAAAATCAAGTAAAAAAGATAAG 42 consensus_10814#3 TCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATNNN 85 consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 TCCAATGAAACTGACCTAAACTCCTCTGTAAAAAATAAAAAATCAAGTAAAAAAGATAAG 900 consensus_10814#1 TCCGAAGGGAACAAGGGATCGTGATCCCATCCAAATGACAATTCTTGAAGATGTTTTTAG 125 consensus_10814#2 AAAGCCAAAGAACAGTTAGAGGA-GGAATCTGTTACATCTGGCGAATCCATGGCTGTTGG 101 consensus_10814#3 NNNNNNNNNNNNNNNNNNNNNNNAGGAATCTGTTACATCTGGCGAATCCATGGCTGTTGG 145 consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 AAAGCCAAAGAACAGTTAGAGGA-GGAATCTGTTACATCTGGCGAATCCATGGCTGTTGG 959 consensus_10814#1 TACAATAATACGGTGTTTCAAGCGTCATGATGCGGTTACCATAGACACCCCTGTTTTTGA 185 consensus_10814#2 TAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTA-----GTTCTTCT 156 consensus_10814#3 TAGTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTA-----GTTCTTCT 200 consensus_10814#4 -------------CGCGGCCAAGAATTCGGTACGAGGCGA---TTTA-----AGTCT--- 36 consensus_10814#0 TATTGTAGCTGGTGGCGGCCGATACGATGGTTTAGTGGGAATGTTTA-----GTTCTTCT 1014 consensus_10814#1 GCTCAAGGAAGTGCTAGCTGGAAAGTATGGTGAGGAGTCTAAACTTATATACGATCTTCA 245 * * * *** * *** *** consensus_10814#2 GGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATT--AGCAATTA 214 consensus_10814#3 GGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATT--AGCAATTA 258 consensus_10814#4 --AGCGCGCGGGTTGGATTACTATNCCGGTGTTA----TTTACGA-------AGCTGTTT 83 consensus_10814#0 GGAACACGAGTGCCATGTGTCGGTTTTAGTTTTGGGGTTGAACGACTATT--AGCAATTA 1072 consensus_10814#1 GGATCAAGGTGGTGAAGCGCTTGCTCTTAGATATGATTTAACTGTCCCTTTCGCCCGTTA 305 * * * * * * * * ** consensus_10814#2 AAGAAGCTTTGA------GTAATTCTTCAGATAAGAACAAAT-GTAGCGTGCGACCAACT 267 consensus_10814#3 AAGAAGNNNNNN------NNAATTCTTCAGATAAGAACAAAT-GTAGCGTGCGACCAACT 311 consensus_10814#4 TGAAAGGTTTCA------CTTACAATCCAAATA-GTCCAAGT-GCAG-----AATTGACT 130 consensus_10814#0 AAGAAGCTTTGA------GTAATTCTTCAGATAAGAACAAAT-GTAGCGTGCGACCAACT 1125 consensus_10814#1 TGTTGCCATGCATAAGATCAAATCTATCAAGCGATACCAAATTGGAAAGGTTTACCGGCG 365 * ** *** * * * * * consensus_10814#2 GAAACTGAAGTCATGGTTGCTGGA--GCTCATAAGGGTCTTATCA-TGCAACGTCTACAA 324 consensus_10814#3 GAAACTGAAGTCATGGTTGCTGGA--GCTCATAAGGGTCTTATCA-TGCAACGTCTACAA 368 consensus_10814#4 GGTTCCAA------------TGAA--ACTGACCTAAACTCCTCTG-TAAAAAATAAAAAA 175 consensus_10814#0 GAAACTGAAGTCATGGTTGCTGGA--GCTCATAAGGGTCTTATCA-TGCAACGTCTACAA 1182 consensus_10814#1 TGATCAACCGGCTATGACGCGCGGTCGTTACCGAGAGTTTTACCAGTGTGATTTCGATAT 425 * * * * * * * consensus_10814#2 TGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCC 384 consensus_10814#3 TGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAANNNNNNNNNN 428 consensus_10814#4 TCAAGTAAAA------AAGATAAGAAAGCCAAAGA-ACAGT-TAGAGGAGGAATCTGTTA 227 consensus_10814#0 TGTTGTCAACTTTTATGGGATGCAAACATTAAGGCTACAATGTCGCATAAAAATCACCCC 1242 consensus_10814#1 TGCTGGAGATC---ATGGGCTAATGCTAGCGGATGCAGAATGCCTTCGAATAATGTACGA 482 * * * * * * * * * consensus_10814#2 AAA-CTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGT-TGGCCGTTGTTC 442 consensus_10814#3 NNN-NNNNNNNNNNNNNNNNNGTATTGTGAATCAACTGGTATTCCGT-TGGCCGTTGTTC 486 consensus_10814#4 CAT-CTGGCGAATCCATGGCTGT-TGGTAGTGTAGCTGGTGGCGGCC-GATACGATGGTT 284 consensus_10814#0 AAA-CTATTGGATCAACTACAGTATTGTGAATCAACTGGTATTCCGT-TGGCCGTTGTTC 1300 consensus_10814#1 AGTGCTTTCGGAATTGAATTTAGGTGATTTTGTCATCAAGATCAACCACAGACGTTTGCT 542 * * ** * consensus_10814#2 TGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAG 502 consensus_10814#3 TGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAG 546 consensus_10814#4 TAGTGGGAAT--GTTTAGTTCTT------------------------------------- 305 consensus_10814#0 TGGGAGAAAGTGAATTAGCTCGTAACACTGTCAAGTTGAGAGATATTGAAAGCCGAGAAG 1360 consensus_10814#1 TGATGGACTGT-TTTCGGCTTGTGATGTGCCATCGAACAAGTTTGTCCCAGCTTGTTCCT 601 * * * * * * consensus_10814#2 AATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCANAT 562 consensus_10814#3 AATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTAC----- 601 consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 AATACGAAGTTTTGTACACAGATCTTGTGAATAAGATCAAAGAAGTACTATCTACCAAAT 1420 consensus_10814#1 CAATTGACAAACTAGACAAGATTCCTTGGGAAGATGTCAGACGAGAATTATGTGAAGACA 661 consensus_10814#2 ACCATANATAAAACTTTGTTACATACCGTATTTGGCTGTGTGAT-GTTTTTCTGAATTTG 621 consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 ACCATAAATAAAACTTTGTTACATACCGTATTTGGCTGTGTGAT-GTTTTTCTGAATTTG 1479 consensus_10814#1 AAGGGTTGTCACCTGAAGCTGCAGATAAAATTGGTTCATATGTTCAGTTAACTGGATGTT 721 consensus_10814#2 TGCATCTCATAATCTGGTATTATTTGACGTATTTNNACCATACATT-------------- 667 consensus_10814#3 ------------------------------------------------------------ consensus_10814#4 ------------------------------------------------------------ consensus_10814#0 TGCATCTCATAATCTGGTATTATTTGACGTAATTTACCAATACAATTTTATCGCGGAAAA 1539 consensus_10814#1 TGGATCTCGTTGAACGTCTCGAATCAGATGAGCAT------------------------- 756 consensus_10814#2 ------------- consensus_10814#3 ------------- consensus_10814#4 ------------- consensus_10814#0 AAAAAAAAAAAAA 1552 consensus_10814#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||