cluster # 1082

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Schistosoma mansoni
cluster # 1082 cluster # 1082 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1082#0 length = 170 sequences # 1

consensus_1082#1 length = 85 sequences # 1

consensusID : consensus_1082#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence

                              [TCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACAGAAGTGACGAGCTACACCCCATCCAC]

[+] EMBL CD157819             [TCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACAGAAGTGACGAGCTACACCCCATCCAC]




>consensus_1082#0
TCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCC
AATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCC
ACTCTCTCCATCGCCAAACCAACAGAAGTGACGAGCTACACCCCATCCAC

consensusID : consensus_1082#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 85
fasta sequence

                              [TCGATACAACTACACCTCTTCACAGTCCACTCTCTCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCA]

[+] EMBL CD129242             [TCGATACAACTACACCTCTTCACAGTCCACTCTCTCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCA]




>consensus_1082#1
TCGATACAACTACACCTCTTCACAGTCCACTCTCTCCACCGCCGCCGCCACAAAAACTAT
ACTCCCGTCTAGTCAGTACACTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1082#0      TCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCC 60
consensus_1082#1      ------------------------------------------------------------
                                                                                  

consensus_1082#0      AATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCC 120
consensus_1082#1      --------------------------------TCGATACAACTACACCTCTTCACAGTCC 28
                                                      ****************************

consensus_1082#0      ACTCTCTCCATCGCCAAACCAACAGAAGTGACGAGC---TACACCCCATCCAC---- 170
consensus_1082#1      ACTCTCTCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCA 85
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