|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1281 fasta sequence
[ATTATTCAATGAGGTCCACAATCCTTTTCATATTCATCTGGTCATCAGTTTATACAGAACCTATTCCTCTTAGTAAAATTCGTCTAAATCAAGATGGAATGTTCATGGATCATCTTGGATTTATTAAACTATTTAGAGGGTTTAATAATGTTCAAAAAGATTTTCCATGGTATCAAGGAAATGCATGGAATATTACACAGATACAAATGTTTCAAAATTGGGGTTTAAATGTTATACGATTAGGTATTATGTGGAGTGGAGTAAAACCGAATATATCCATAGTGAACACGACATACTTAAATGTAATGGAAAGCCTGATTGATTTATATGCTGAACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTACTTATGATGGTATACCACTATGGTTAATTAATCAATTTAAAAGACCACCAACCATTATGCAAGAACCTTGGCCATATAAAAAGTTACCAAAATGGGATGGAGCATATTATTTAACTTATGAATGTACTAATGGTGCACAACAATTATATGAGAATGTATCAGGTGCTTGGAATCATTGGGGTGATTTTTGGGAAATAATAGCTAAACACTATGGAAAAAAGTCGAATGTACTTGGTTATGATTTGATTAATGAACCTCCACCTGGAAATTTTTATACTAATCCATTAAGAGGGTTTCCAGGTTATGCTGGTCGATATAATCTACTACCAGTTTACGATTATCTTGTTGAGAGAATACGTCAATATGACAAGTCATCACTAATATTCTATGAACCAGTTACATATGGTATATTTACTCCTCTAAGCACTTCAGGATGGTTAGGGACTGGATTTCGACGTGTTCCTGGAGCGAATCGTGACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGTTGGATACTACAGAGTGATTATCCGAACTCGACAATGCCTTTGTGGAAGAAAGCGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAATTTCGGCTGGTTGTCG]
[+] EMBL AI975820 [ATTATTCAATGAGGTCCACAATCCTTTTCATATTCATCTGGTCATCAGTTTATACAGAACCTATTCCTCTTAGTAAAATTCGTCTAAATCAAGATGGAATGTTCATGGATCATCTTGGATATATTAAACTATTTAGAGGATTTAATAATGTTCAAAAAGATTTTCCATGGTATCAAGGAAATGCATGGAATATTACACAGATACAAATGTTTCAAAATTGGGGTTTAAATGTTATACGATTAGGTATTATGTGGAGTGGAGTAAAACCGAATATATCCATAGTGAACACAACATACTTAAATGTAATGGAAAGCCTGATTGATTTATATGCTGAACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTACTTATGATGGTATACCACTATGGTTAATTAATCAATTTAAAAGACCACCAACCATTATGCAAGAACCTTGGCCATATAAAAAGTTACCAAAATGGGATTGAGCATATTATTTAACTTATGAATGTA ]
[-] EMBL CD069951 [ GAACCTATTCCTCTTAGTAAAATTCGTCTAAATCAAGATGGAATGTTCATGGATCATCTTGGATTTATTAAACTATTTAGAGGGTTTAATAATGTTCAAAAAGATTTTCCATGGTATCAAGGAAATGCATGGAATATTACACAGATACAAATGTTTCAAAATTGGGGTTTAAATGTTATACGATTAGGTATTATGTGGAGTGGAGTAAAACCGAATATATCCATAGTGAACACGACATACTTAAATGTAATGGAAAGCCTGATTGATTTATATGCTGAACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTACTTATGATGGTATACCACTATGGTTAATTAATCAATTTAAAAGACCACCAACCATTATGCAAGAACCTT GCCATAT AAAGTTAC ]
[-] EMBL CD129003 [ TTCCTCTTAGTAAAATTCGTCTAAATCAAGATGGAATGTTCATGGATCATCTTGGATTTATTAAACTATTTAGAGGGTTTAATAATGTTCAAAAAGATTTTCCATGGTATCAAGGAAATGCATGGAATATTACACAGATACAAATGTTTCAAAATTGGGGTTTAAATGTTATACGATTAGGTATTATGTGGAGTGGAGTAAAACCGAATATATCCACAGTGAACACGACATACTTAAATGTAATGGAAAGCCTGATTGATTTATATGCTGAACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTACTTATGATGGTATACCACTATGGTTAATTAATCAATTTAAAAGACCACCAACCATTATGCAAGAACCTTGGCCATATAAAAAGTTACCAAAATGGGATGGAGCATATTATTTAACTTATGAATGTACTAATGGGGCACAAGAATTATATGAGAATGTATCAGGTGC AAGAATCA TGGGGTGAT ]
[+] EMBL CD078566 [ AAACCGAATATATCCATAGTGAACACGACATACTTAAATGTAATGGAAAGCCTGATTGATTTATATGCTGAACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTACTTATGATGGTATACCACTATGGTTAATTAATCAATTTAAAAGACCACCAACCATTATGCAAGAACCTTGGCCATATAAAAAGTTACCAAAATGGGATGGAGCATATTATTTAACTTATGAATGTACTAATGGAGCACAACAATTATATGAGAATGTATCAGGTGCTTGGAATCATTGGGGTGATTTTTGGGAAATAATAGCTAAACATTATGGAAAAAAGTCGAATGTACTTGGTTATGATTTGATTAATGAACCACCACCTGGTAATTTTTATTCTAATCCATTACGAGGGTTTCCAGGTTATGCTGGCCGATATAATCTATTACCAGTTTACGATTACCTTGTTGAGAGAATACGTCAGTATGACAAGTCATCACTAATATTCTATGAACCAGNTACATATGGTATATTTACTCCTCTAAGCACTTCAGGATGGTTAGGGACTGGATTTCGACGTGTTCCT ]
[+] EMBL CD084332 [ cgAGGCC CCAACCATTTTGCAAGAACCATGGCCATATGAAAAGTTACCAGATTGGGAAGGAGCATATTATTTAACTTATGAATGTTCTGAAGGTGCACAACAATTGTATGAGAATGTATCAGGTGCTTGGAATCATTGGGGTGATTTTTGGGAAATAATAGCTAAACACTATGGAAAAAAGTCGAATGTACTTGGTTATGATTTGATTAATGAACCTCCACCTGGAAATTTTTATACTAATCCATTAAGAGGGTTTCCAGGTTATGCTGGTCGATATAATCTACTACCAGTTTACGATTATCTTGTTGAGAGAATACGTCAATATGACAAGTCATCACTAATATTCTATGAACCAGTTACATATGGTATATTTACTCCTCTAAGCACCTCAGGATGGTTAGGGACTGGATTTCGACGTGTTCCTGGAGCGAATCGTGACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGTTGGATACTACAGAGTGATTATCCGAACTCGACAATGCCTTTGTGG ]
[+] EMBL CD078441 [ CCACCAACCATTTTGCAAGAACCATGGCCATATGAAAAGTTACCAGATTGGGAAGGAGCATATTATTTAACTTATGAATGTTCTGAAGGTGCACAACAATTGTATGAGAATGTATCAGGTGCTTGGAATCATTGGGGTGATTTTTGGGAAATAATAGCTAAACACTATGGAAAAAAGTCGAATGTACTTGGTTATGATTTGATTAATGAACCTCCACCTGGAAATTTTTATACTAATCCATTAAGAGGGTTTCCAGGTTATGCTGGTCGATATAATCTACTACCAGTTTACGATTATCTTGTTGAGAGAATACGTCAATATGACAAGTCATCACTAATATTCTATGAACCAGTTACATATGGTATATTTACTCCTCTAAGCACCTCAGGATGGTTAGGGACTGGATTTCGACGTGTTCCTGGAGCGAATCGTGACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGNTGGATACTACAGAGTGATTATCCGAACTCG ]
[-] EMBL CD125791 [ TGACAAGTCATCACTAATATTCTATGAACCAGTTACATATGGTATATTTACTCCTCTAAGCACTTCAGGATGGTTAGGGACTGGATTTCGACGTGTTCCTGGAGCGAATCGTGACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACGATGCCTTTCTGGAAGAAAGCGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAATTTCGGCTGGTTGTCG]
consensusID : consensus_10820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 823 fasta sequence
[CGAGCCTANAATTCGGCACGAGGCTAAGCACTTCAGGATGGTTAGGGACTGGATTTCGACGTGTTCCTGGAGCGAATCGTGACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCCTTTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAGACGAGAAATCAGTACAGTGAGAAACAGAATTTAATTACAGAAATTTACATACCGTTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGGAAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAATGGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTATTCAAACGATTACTTGTC-AATAACATTTAAATAAACAGATTA-AATATAATTT]
[+] EMBL CD081507 [CGAGCCTANAATTCGGCACGAGGCTAAGCACTTCAGGATGGTTAGGGACTGGATTTCGACGTGTTCCTGGAGCGAATCGTGACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCCTTTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAGACGAGAAATCAGTACAGTGAGAAACAGAATTTAATTACAGAAATTTACATACCGTTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGGAAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAATGGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTATTCAAACGATTACTTGTCNNAT ACATTTAAATAAACAGATTA AATATAATT ]
[+] EMBL CD183438 [ TGACAAATCAGCACCGAGTAAAAGTGCTTTGTCTTACCATTATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCCTTTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATAGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTGTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCT ]
[-] EMBL CD183546 [ GACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCC TTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTT ]
[-] EMBL CD189628 [ GACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCCTTTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTT ]
[-] EMBL CD190212 [ tACAAATCAGCACAGAGTAAAAGTGTTTTGTCTACCCACTATTAGTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCCTCTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTT ]
[+] EMBL CD079219 [ CTTTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAGACGAGAAATCAGTACAGTGAGAAACAGAATTTAATTACAGAAATTTACATACCGTTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGGAAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAATGGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTATTCANACGATTACTTGTC AATAACATTTANATAAACAGATTANNATATAtt ]
[-] EMBL CD076767 [ ACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTTTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAGACGAGAAATCAGTCCAGTGAGAAACAGAATTTAATTACAGAAATTTACATCCCGTTATCTGTACATTATCCAAATGGATATTCAATCAATTTGAATCCAAACAATTTAACTACTGAAATGAAGGGAAATACATTGTCTATATACTTGCCAACTGATTTAAGGAATGAACATGTGCTTGTTGAAATGGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTATTCAAACGATTACTTGTC AATAACATTTAAATAAACAGATTA AATATAATTT]
[-] EMBL CD075331 [ CGGTTTATGTGNAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAGACGAGAAATCAGTACAGTGAGAAACAGAATTTAATTACAGAAATTTACATACCGTTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGGAAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAATGGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTATTCAAACGATTACTTGTC AATAACATTTAAATAAACAGATTA AATATAATTT]
[-] EMBL CD073033 [ TAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAGACGAGAAATCAGTACAGTGAGAAACAGAATTTAATTACAGAAATTTACATACCGTTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGGAAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAATGGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTATTCAAACGATTACTTGTC AATAACATTTAAATAAACAGATTA AATATAATTT]
consensusID : consensus_10820#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[AAATTCGGCACGAGGTCCAAGGATAAATCTCATAAGAAACATTATTATTACATTTCTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAGACGAGAAATCAGTACAGTGAGAAACAGAATTTAATTACAGAAATTTACATACCGTTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGGAAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAATGGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTATTCAAACGATTACTTGTCNATACATTNTAATAAACAGATTAATATTATTNTAT]
[+] EMBL CD083192 [AAATTCGGCACGAGGTCCAAGGATAAATCTCATAAGAAACATTATTATTACATTTCTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACATTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAGACGAGAAATCAGTACAGTGAGAAACAGAATTTAATTACAGAAATTTACATACCGTTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGGAAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAATGGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTATTCAAACGATTACTTGTCNATACATTNTAATAAACAGATTAATATTATTNTAT]
consensusID : consensus_10820#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[AATAACTAAGAAAAAAAAACCAGAAACAAAATAGTTTACAANANTGTTTTAAATAAGGATGAAAATGAGTTTATTAAAAGAACAGAACTGGATTAGATAGTTGATAAATAACAAATGATTGAATGAATTTATACGAAATAATATATAATTTATAGGAGAAATAATAAAAGAGTGAATATATCCATAGTGAACACGACATACTTAAATGTAATGGAAAGCCTGATTGATTTATATGCTGAACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTACTTATGATGGTATACCACTATGCTTAATTAATCAATTTAAAAGACCACCAACCATT]
[+] EMBL CD202598 [AATAACTAAGAAAAAAAAACCAGAAACAAAATAGTTTACAANANTGTTTTAAATAAGGATGAAAATGAGTTTATTAAAAGAACAGAACTGGATTAGATAGTTGATAAATAACAAATGATTGAATGAATTTATACGAAATAATATATAATTTATAGGAGAAATAATAAAAGAGTGAATATATCCATAGTGAACACGACATACTTAAATGTAATGGAAAGCCTGATTGATTTATATGCTGAACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTACTTATGATGGTATACCACTATGCTTAATTAATCAATTTAAAAGACCACCAACCATT]
consensusID : consensus_10820#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[CGTGTAGTCGTTTGAATAATGACAATGATAGTTTGTCAAGTCACATCCAAGTTGAGTTATTTTCTAACAAATGGGAGATTTGTCAAGCAACATTTCAATCATGAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAACTGAGCAATCAGTACAGTGAGAAACAGAATTTGATTGCAGAAATTTACATACCATTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTGCTGAATTGAGGGGAAATACATTGTCTATATACTCGCCAACTGATCTAAGGAATGAA]
[+] EMBL CD064911 [CGTGTAGTCGTTTGAATAATGACAATGATAGTTTGTCAAGTCACATCCAAGTTGAGTTATTTTCTAACAAATGGGAGATTTGTCAAGCAACATTTCAATCATGAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAACTGAGCAATCAGTACAGTGAGAAACAGAATTTGATTGCAGAAATTTACATACCATTATCTGTACATTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTGCTGAATTGAGGGGAAATACATTGTCTATATACTCGCCAACTGATCTAAGGAATGAA]
consensusID : consensus_10820#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[CGGTCCGAGGTTTGTCTTACCATTATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCCTTTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACTTTTTGATC]
[+] EMBL CD077672 [CGGTCCGAGGTTTGTCTTACCATTATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCCTTTCTGGAAGAAAGTGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACTTTTTGATC]
consensusID : consensus_10820#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 158 fasta sequence
[TGAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAACTGAGCAATCAGTACAGTGAGAAACAGAATTTGATTGCAGAAATTTACATACCATTACCGTGAACACTACCAAAAGGGGAAATCCACACGTCCGCACCCAAAAAATTTACCGCGTGAT]
[+] EMBL AI444559 [TGAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAACTGAGCAATCAGTACAGTGAGAAACAGAATTTGATTGCAGAAATTTACATACCATTACCGTGAACACTACCAAAAGGGGAAATCCACACGTCCGCACCCAAAAAATTTACCGCGTGAT]
[+] EMBL AI447086 [TGAAACTGGAGAATATAGTTTCTCCTTCATTACAAACCAACTGAGCAATCAGTACAGTGAGAAACAGAATTTGATTGCAGAAATTTACATACCATTACCGTGAACACTACCAAAAGGGGAAATCCACACGTCCGCACCCAAAAAATTTACCGCGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 CGAGCCTANAATTCGGCACGAGGCTAAGCACTTCAGGATGGTTAGGGACTGGATTTCGAC 60
consensus_10820#0 ------------------------------------------------------------
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 GTGTTCCTGGAGCGAATCGTGACAAATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATT 120
consensus_10820#0 ------------------------------------------------------------
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------AAATTCGGCACGAGGTCCAAGGATAAATCTCATAAGAAACAT 42
consensus_10820#1 ATTATTGTTGGATACTACAGAATGATTATCAGAACTCCACAATGCCTTTCTGGAAGAAAG 180
consensus_10820#0 ------------------------------------------------------------
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 TATTATTACATTTCTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAA 102
consensus_10820#1 TGTTATGTGACTCGTTCCTCTTACCGACTGTGATTTCCAATGTAATTAAAGCAACAAAAA 240
consensus_10820#0 ------------------------------------------------------------
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 CAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCAT 162
consensus_10820#1 CAACTGGAGGTGGTAGATTTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCAT 300
consensus_10820#0 ------------------ATTATTCAATGAGGTCCACAATCCTTTTCATATTCATCTGGT 42
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 CTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAAT 222
consensus_10820#1 CTAGTGTCAACACACTAGAATGTAATGCGGTATTGGATGAAGCTGATAAACATTTTGAAT 360
consensus_10820#0 CATCAGTTTATACAGAACCTATTCCTCTTAGTAAAATTCGTCTAAATCAAGATGGAATGT 102
consensus_10820#3 -----------------------------------------AATAACTAAGAAAAAAAAA 19
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ---------------------------CGTGTAGTCGTTTGAATAATGACAATGATAG-T 32
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 CATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCA-G 281
consensus_10820#1 CATGGACATTTTGGGATGGATACTTTATAGATAATGCAGGAAATCCTATTCAAAGTCA-G 419
consensus_10820#0 TCATGGATCATCTTGGATTTATTAAACTATTTAGAGGGTTTAATAATGTTCAAAAAGATT 162
consensus_10820#3 CCAGAAACAAAATAG--TTTACAANANTGTT-------TTAAATAAGGATGAAAATGAGT 70
consensus_10820#5 -------CGGTCCGAGGTTTGTCTTACCATTATTATTGTTGGATACTA--CAGAATGA-- 49
consensus_10820#4 TTGTCAAGTCACATCCAAGTTGAGTTATTTTCTAACAAATGGGAGATTTGTCAAGCAACA 92
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 GTGCAGTCTTTCATTCGTCCCTA-TCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACA 340
consensus_10820#1 GTGCAGTCTTTCATTCGTCCCTA-TCCTCAGTCAACAAATGGGAGATTTCTCAAGCAACA 478
consensus_10820#0 TTCCATGGTATCAAGGAAATGCATGGAATATTACACAGATA-CAAATGTTTCAAAATTGG 221
consensus_10820#3 TTAT-TAAAAGAACAGAACTGGATTAGATAGTTGATAAATAACAAATGATTGAAT----G 125
consensus_10820#5 TTAT-CAGAACTCCACAA-TGCCTTTC-TGGAAGA-AAGTGTTATGTGACTCGTTCCTCT 105
consensus_10820#4 TTTCAATCATGAAACTGGAGAATATAGTTTCTCCTTC-ATTACAAACCAACTGAGCA-AT 150
consensus_10820#6 ---------TGAAACTGGAGAATATAGTTTCTCCTTC-ATTACAAACCAACTGAGCA-AT 49
consensus_10820#2 TTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTC-ATTACAAACCAGACGAGAA-AT 398
consensus_10820#1 TTTCAATCATAAAACTGGAGAATATAGTTTCTCCTTC-ATTACAAACCAGACGAGAA-AT 536
consensus_10820#0 GGTTTA-AATGTTAT---ACGAT-TAGGTATTATGTGGAGTGGAGTAAAACCGAATATAT 276
consensus_10820#3 AATTTA-TACGAAAT---AATATATAATTTATAGGAGAAATAATAAAAGAGTGAATATAT 181
consensus_10820#5 TACCGACTGTGATTT---CCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGAT 162
** ** * * * **
consensus_10820#4 CAGTAC-AGTGAGAAACAGAATTTGA--TTGCAGAAATTTACATACCATTATC-TGTACA 206
consensus_10820#6 CAGTAC-AGTGAGAAACAGAATTTGA--TTGCAGAAATTTACATACCATTACCGTGAACA 106
consensus_10820#2 CAGTAC-AGTGAGAAACAGAATTTAA--TTACAGAAATTTACATACCGTTATC-TGTACA 454
consensus_10820#1 CAGTAC-AGTGAGAAACAGAATTTAA--TTACAGAAATTTACATACCGTTATC-TGTACA 592
consensus_10820#0 CCATAG-TGAACACGACATACTTAAATGTAATGGAAAGCCTGATTG-ATTTATATGCTGA 334
consensus_10820#3 CCATAG-TGAACACGACATACTTAAATGTAATGGAAAGCCTGATTG-ATTTATATGCTGA 239
consensus_10820#5 TTTTAACTGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAG 222
** * * * * * **** * *
consensus_10820#4 TTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTGCTGAATTGAGGGG 266
consensus_10820#6 CTACCAAAAGGGGAAATCCACACGTCCGCACCCAAAAAATTTA-CCGCGTGAT------- 158
consensus_10820#2 TTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGG 514
consensus_10820#1 TTATCCAAATGGATATTCAATCAATCTGAATCCAAACAATTTAACTACTGAAATGAAGGG 652
consensus_10820#0 ACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTAC 394
consensus_10820#3 ACATGGAATATATGTGATCTTGGATATGCATCAAGATGGTTTATCAAGTCGATATGGTAC 299
consensus_10820#5 A-ATGTAAT----GCGGTATTGGATGAAGCT---GATAAACTTTTTGATC---------- 264
* ** * * *
consensus_10820#4 AAATACATTGTCTATATACTCGCCAACTGATCTAAGGAATGAA----------------- 309
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 AAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAAT 574
consensus_10820#1 AAATACATTGTCTATATACTTGCCAACTGATCTAAGGAATGAACATGTGCTTGTTGAAAT 712
consensus_10820#0 TTATGATGGTATACCACTATGGTTAATTAATCAATTTAAAAGACCACCAACCATTATGCA 454
consensus_10820#3 TTATGATGGTATACCACTATGCTTAATTAATCAATTTAAAAGACCACCAACCATT----- 354
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 GGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTAT 634
consensus_10820#1 GGAACTTGTTAGAAAATAACTCAACTTGAATGTGACTGGATAAACTATCATTGTCATTAT 772
consensus_10820#0 AGAACCTTGGCCATATAAAAAGTTACCAAAATGGGATGGAGCATATTATTTAACTTATGA 514
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 TCAAACGATTACTTGTCNATACATTNTAATAAACAGATTAATATTATTNTAT-------- 686
consensus_10820#1 TCAAACGATTACTTGTCAATAACATTTAAATAAACAGATTAAATATAATTT--------- 823
consensus_10820#0 ATGTACTAATGGTGCACAACAATTATATGAGAATGTATCAGGTGCTTGGAATCATTGGGG 574
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TGATTTTTGGGAAATAATAGCTAAACACTATGGAAAAAAGTCGAATGTACTTGGTTATGA 634
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TTTGATTAATGAACCTCCACCTGGAAATTTTTATACTAATCCATTAAGAGGGTTTCCAGG 694
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TTATGCTGGTCGATATAATCTACTACCAGTTTACGATTATCTTGTTGAGAGAATACGTCA 754
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 ATATGACAAGTCATCACTAATATTCTATGAACCAGTTACATATGGTATATTTACTCCTCT 814
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 AAGCACTTCAGGATGGTTAGGGACTGGATTTCGACGTGTTCCTGGAGCGAATCGTGACAA 874
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 ATCAGCACCGAGTAAAAGTGTTTTGTCTTACCATTATTATTGTTGGATACTACAGAGTGA 934
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TTATCCGAACTCGACAATGCCTTTGTGGAAGAAAGCGTTATGTGACTCGTTCCTCTTACC 994
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 GACTGTGATTTCCAATGTAATTAAAGCAACAAAAACAACTGGAGGTGGTAGATTTTTAAC 1054
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TGAATTCGGTTTATGTGGAGATGATGGAAATCCATCTAGTGTCAACACACTAGAATGTAA 1114
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TGCGGTATTGGATGAAGCTGATAAACATTTTGAATCATGGACATTTTGGGATGGATACTT 1174
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 ------------------------------------------------------------
consensus_10820#6 ------------------------------------------------------------
consensus_10820#2 ------------------------------------------------------------
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TATAGATAATGCAGGAAATCCTATTCAAAGTCAGGTGCAGTCTTTCATTCGTCCCTATCC 1234
consensus_10820#3 ------------------------------------------------------------
consensus_10820#5 ------------------------------------------------------------
consensus_10820#4 -----------------------------------------------
consensus_10820#6 -----------------------------------------------
consensus_10820#2 -----------------------------------------------
consensus_10820#1 -----------------------------------------------
consensus_10820#0 TCAGTCAACAAATGGGAGATTTCTCAAGCAATTTCGGCTGGTTGTCG 1281
consensus_10820#3 -----------------------------------------------
consensus_10820#5 -----------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||