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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1001 fasta sequence
[GAGCCATATTCGGCCGAGGTTACTTTGGATTTTTTTAGTAGTTATCCCGTAAGAATCTTAAAAATATGAAGTCAATGAAAATGAGCAATGGTCATTCTATTCCTGTTGTCGGTCTTGGTACATGGAATAGTCCATCAGATGTAGTTGGTGCAGCTGTACAAAAAGCTTTAGAAGTTGGTTATCGTCATTTAGATTGTGCTTATATTTATAAAAATGAAATTGAAGTTGGTATAGCTTTAGAAGAGTCAATGAAACTTTTAAAATTGAACAGAGATGAATTATTTATCACTTCTAAATTATGGCATACAGGACATGACCCAGAAAATGTCAAGAGCTTCTGTGAAATGTCGCTAAGAAATTTACGGTTAAACTATTTGGACTTGTATTTGATACATTTCCCAGTATCTTTCAAGGCTGGTACTTCTGATTTTCCTACAGATGAGAATAATAACCCAATCTTTGATACAGTTCCACTTGAAGAAACATGGAAGGCGATGGAAAACCTGGTCGACGAAGGTTTAGTCAAATCGATTGGTTTATCAAATTTCAATAGACGACAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGTTAATTTGCAAATTGAAGTTCATGCCAATTTTCCTAACACAAAATTAGTTGAATATGCTCAGTCAGTCGGTTTGACTGTGACTGCTTATGCCCCGCTTGGTTCACCTGCTCGTTCACCTTTATCAGCANATTTATTAACTGAACCTTGGGTAATTTCAATTGCACAAAAGCACAATAGAACACCAGCACANATTTTGCTACGTTACTTACTTCAACGTGATATAACCGTTGTACCANAATCAATTACTAATGATAGAAATATAGAANATTTTCAGTTTATCAGCANATTTATTAACTGAACCTTGGNGTATTTCATTGCACAAAGCACATAGACACCGCACNAATTTGCTCGTTACTACTTCACGTGATTACCGTTGACANATCATACTATGATGATATAGAAA]
[+] EMBL CD081715 [GAGCCATATTCGGCCGAGGTTACTTTGGATTTTTTTAGTAGTTATCCCGTAAGAATCTTAAAAATATGAAGTCAATGAAAATGAGCAATGGTCATTCTATTCCTGTTGTCGGTCTTGGTACATGGAATAGTCCATCAGATGTAGTTGGTGCAGCTGTACAAAAAGCTTTAGAAGTTGGTTATCGTCATTTAGATTGTGCTTATATTTATAAAAATGAAATTGAAGTTGGTATAGCTTTAGAAGAGTCAATGAAACTTTTAAAATTGAACAGAGATGAATTATTTATCACTTCTAAATTATGGCATACAGGACATGACCCAGAAAATGTCAAGAGCTTCTGTGAAATGTCGCTAAGAAATTTACGGTTAAACTATTTGGACTTGTATTTGATACATTTCCCAGTATCTTTCAAGGCTGGTACTTCTGATTTTCCTACAGATGAGAATAATAACCCAATCTTTGATACAGTTCCACTTGAAGAAACATGGAAGGCGATGGAAAACCTGGTCGACGAAGGTTTAGTCAAATCGATTGGTTTATCAAATTTCAATAGACGACAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGTTAATTTGCAAATTGAAGTTCATGCCAATTTTCCTAACACAAAATTAGTTGAATATGCTCAGTCAGTCGGTTTGACTGTGACTGCTTATGCCCCGCTTGGTTCACCTGCTCGTTCACCTTTATCAGCANATTTATTAACTGAACCTTGGGTAATTTCAATTGCACAAAAGCACAATAGAACACCAGCACANATTTTGCTACGTTACTTACTTCAACGTGATATAACCGTTGTACCANAATCAATTACTAATGATAGAAATATAGAANATTTTCAGTTTATCAGCANATTTATTAACTGAACCTTGGNGTATTTCATTGCACAAAGCACATAGACACCGCACNAATTTGCTCGTTACTACTTCACGTGATTACCGTTGACANATCATACTATGATGATATAGAAA]
consensusID : consensus_10822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 958 fasta sequence
[AAGCTCTAGAAGTTGGTTATCGACATTTGGACTGTGCTTATGTCTACAGAAATGAAGCGGAAATAGGTGGAGCGCTGGAATGTTCATTAAAGAGTCTAAACTTAAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC-ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT-GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAATTCAAATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAGATTCAATGAATGGAACGTCATTGAAATGAAGGACTTAATTTCATCATACTTTTAAACAAATTCTCTTGGTGTGCTGCTTTT-TATTATTAAATAAAATCTAAATCGCTTCAAAAAAAGTTA]
[+] EMBL CD186376 [AAGCTCTAGAAGTTGGTTATCGACATTTGGACTGTGCTTATGTCTACAGAAATGAAGCGGAAATAGGTGGAGCGCTGGAATGTTCATTAAAGAGTCTAAACTTAAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTCTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATAAAGTACCAC ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGT ]
[+] EMBL CD134787 [ TACAGAAATGAAGCGGAAATAGGTGGAGCGCTGGAATGTTCATTAAAGAGTCTAAACTTAAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCA ]
[+] EMBL CD155064 [ ATAGGTGGAGCGCTGGAATGTTCATTAAAGAGTCTAAACTTAAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTA ]
[+] EMBL CD147152 [ GCTGGAATGTTCATTAAAGAGTCTAAACTTAAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGCCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTCCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGG ]
[+] EMBL CD147233 [ GCTGGAATGTTCATTAAAGAGTCTAAACTTAAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAGAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGA ]
[+] EMBL CD145996 [ TAAAGAGTCTAAACTTAAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATG ]
[+] EMBL CD198588 [ GAGTCTAAACTTAAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCTAATTGAAAATATTCTTAAACATTGTCGTAT ]
[-] EMBL CD191144 [ AGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAA ]
[+] EMBL CD150097 [ CTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGT ]
[-] EMBL CD126095 [ AACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC ATGAGGAAACTTGGAAGGAAGTGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTACAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTact ]
[-] EMBL CD064937 [ GTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAGATGAAGTACCAC ATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAA ]
[+] EMBL CD079261 [ agaattcggCACGAGGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAATTCATATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAGA TCAATGAATGGAACGT ATTGATATG AGGACTTAA TTCATCATATTTTAAAACAA TCTCTT GTGTGCTGCTTTTATATTAATACAT ]
[+] EMBL CD081774 [ cggcaccagCTTGGAA GAAATGG ATAATTGGTTGATGATGGTTTAGTTAAATCTATTGGGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAATTCAAATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAGATTCAATGAATGGAACGTCATTGAAATGAAGGACTTAATTTCATCATACTTTTAAACAAATTCTCTTGGTGTGCTGCTTTT TATTATTAAATAAAATCT ]
[-] EMBL CD075505 [ TTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAATTCAAATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAGATTCAATGAATGGAACGTCATTGAAATGAAGGACTTAATTTCATCATACTTTTAAACAAATTCTCTTGGTGTGCTGCTTTT TAGGATTAAATAAAATCTAAATCGCTTCAAAAA ]
[+] EMBL CD079523 [ ccAAAATTTGG CACGAGGGTCTAGTTAAATATATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAATTCAAATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAGATTCAATGAATGGAACGTCATTGAAATGAAGGACTTAATTTCATCATACTTTTAAACAAATTCTCTTGGTGTGCTGCTTTT TATTATTAAATAAAATCT ]
[-] EMBL CD073789 [ TTTAGTTAAATCTATT GGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAATTCAAATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAGATTCAATGAATGGAACGTCATTGAAATGAAGGACTTAATTTCATCATACTTTTAAACAAATTCTCGTGGTGTGCTGCTTTT TATAAATAAATAAAATCTAACTCGATTCAAAAAAAGTTA]
[+] EMBL AW497772 [ TATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAATTCAAATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAGATTCAATGAATGG ACGTCATTGAAATGAAGG CTTAATTTCCTCATACTT ]
[-] EMBL SMW782 [ ACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTTGATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGATTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCAATTCAAATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAGATTCAATGAATGGAACGTCATTGAAATGAAGGACTTAATTTCATCATACTTTTAAACAAATTCTCTTGGTGTGCTGCTTTT TATTATTAAATAAAATCTA ]
consensusID : consensus_10822#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[TGAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAAGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATTGGTTTATCAAATTTCAACAAACGTCAAACTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACAT]
[+] EMBL CD196818 [TGAAAAGAGAGGACGTTTTTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTGAAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTGTTCCATTCCAAGAAATGGAAAAATTGGTTGATGATGGTTTAGTTAAATCTATTGGTTTATCAAATTTCAACAAACGTCAAACTGAAAATATTCTTAAACATTGTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAATTAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGTTCACCTGCTGCTTCACCAGGAAGAGTTGATTTACTCATGGAACCTTGGGTTTTACAAATTGCTAAACAT]
consensusID : consensus_10822#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[TTTGCAAATTAAAGTTCATGCCAATTTTCCTAACACAAAATTAGTTGAGTATGCTCAGTCAGTCGGTTTGACTGTGACTGCTTATGCCCCGCTTGGTTCACATGCTCGTTCACCTTTATCAGCAAATTTATTAACTGAACCTTGGGTAATTTCAATTGCACAAAAGCACAATAGAACACCAGCACAAATTTTGCTACGTTACTTACTTCAACGTGATATAACCGTTGTACCAAAATCAATTACTAATGATAGAATAATAGAAAATTTTCAGATATTTGATTTTGAACTAACAAATGATGAAATGCATCAGCTGAATACGAATGGATTAAATCAACGTAAATTTAAAATGCTTGGAATGAT]
[-] EMBL CD066599 [TTTGCAAATTAAAGTTCATGCCAATTTTCCTAACACAAAATTAGTTGAGTATGCTCAGTCAGTCGGTTTGACTGTGACTGCTTATGCCCCGCTTGGTTCACATGCTCGTTCACCTTTATCAGCAAATTTATTAACTGAACCTTGGGTAATTTCAATTGCACAAAAGCACAATAGAACACCAGCACAAATTTTGCTACGTTACTTACTTCAACGTGATATAACCGTTGTACCAAAATCAATTACTAATGATAGAATAATAGAAAATTTTCAGATATTTGATTTTGAACTAACAAATGATGAAATGCATCAGCTGAATACGAATGGATTAAATCAACGTAAATTTAAAATGCTTGGAATGAT]
consensusID : consensus_10822#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[TCAACATTGTTGAGCGTAAGACTCTTAAAAATATGAAGTCAATGAAAATGAGCAATGGTCATTCTATTCCTGTTGTCGGTCTTGGCACATGGAATAGTCCATCAGATGTAGTTGGAGCAGCTGTACAAAAAGCTTTAGAAGTTGGTTATCGTCATTTAGATTGAGCTTATATTTATAAAAATGAAATTGAACTTGGTCTAGCTCTAGAAGAGTCAATGAAACTTTTAAAATTGAACAGAGATGAATGATTTATCACTTCTAAATTATGGCATACAGGACATGACCCAGAAAATGTCAAGAGCTTCTGTGAAATGTCGCTATAGAAATTTACGGGTAAACTATTTG]
[+] EMBL CD133176 [TCAACATTGTTGAGCGTAAGACTCTTAAAAATATGAAGTCAATGAAAATGAGCAATGGTCATTCTATTCCTGTTGTCGGTCTTGGCACATGGAATAGTCCATCAGATGTAGTTGGAGCAGCTGTACAAAAAGCTTTAGAAGTTGGTTATCGTCATTTAGATTGAGCTTATATTTATAAAAATGAAATTGAACTTGGTCTAGCTCTAGAAGAGTCAATGAAACTTTTAAAATTGAACAGAGATGAATGATTTATCACTTCTAAATTATGGCATACAGGACATGACCCAGAAAATGTCAAGAGCTTCTGTGAAATGTCGCTATAGAAATTTACGGGTAAACTATTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10822#1 AAGCTCTAGAAGTTGGTTATCGACATTTGGACTGTGCTTATGTCTACAGAAATGAAGCGG 60
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 ------------------------------------------------------------
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 AAATAGGTGGAGCGCTGGAATGTTCATTAAAGAGTCTAAACTTAAAAAGAGAGGACGTTT 120
consensus_10822#2 ------------------------------------------TGAAAAGAGAGGACGTTT 18
consensus_10822#3 -----------------------------------------------------------T 1
consensus_10822#0 ------------------------------------------------GAGCCATATTCG 12
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 TTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTG 180
consensus_10822#2 TTGTTACTTCTAAGCTGTGGAATACTTTTTTCCGCCCTGAGCATGTCAGGAAAGCCTGTG 78
consensus_10822#3 TTGCAAAT--TAAAGTTCATGCCAATTTTCCTAACACAAAATTAGTTGAGTATGCTCAGT 59
consensus_10822#0 GCCGAGGTTACTTTGGATTTTTTTAGTAGTTATCCCGTAAGAATCTTAAAAATATGAAGT 72
consensus_10822#4 --------------------TCAACATTGTTGAGC-GTAAGACTCTTAAAAATATGAAGT 39
* * * * *
consensus_10822#1 AAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTG 240
consensus_10822#2 AAGAAACTTTGAAGAATTTGCGTCTTAAATACCTTGATTTGTACTTAATTCATTGGCCTG 138
consensus_10822#3 CAGTCGGTTTGA-----CTGTGACTG------CTTATGCCCCGCTTGGTTCACATGCTCG 108
consensus_10822#0 CAATGAAAATGAGCAATGGTCATTCTA--TTCCTGTTGTCGGTCTTGGTACATGGAATAG 130
consensus_10822#4 CAATGAAAATGAGCAATGGTCATTCTA--TTCCTGTTGTCGGTCTTGGCACATGGAATAG 97
* *** ** *** ** *
consensus_10822#1 TTCCATTCCAATATGGTGAATGTCTTTTTCCCACTGATTCGAACGGGAATTTCTGTGTAG 300
consensus_10822#2 TTCCATTCCAA------------------------------------------------- 149
consensus_10822#3 TTCACCTTTA-------------------------------------------------- 118
consensus_10822#0 TCCATCAGATGT------------------------------------------------ 142
consensus_10822#4 TCCATCAGATGT------------------------------------------------ 109
* *
consensus_10822#1 ATGAAGTACCACATGAGGAAACTTGGAAGGAAATGGAAAAATTGGTTGATGATGGTTTAG 360
consensus_10822#2 -----------------------------GAAATGGAAAAATTGGTTGATGATGGTTTAG 180
consensus_10822#3 ---------------------------------TCAGCAAATTTATTAACTGAACCTTGG 145
consensus_10822#0 -------------------------------AGTTGGTGCAGCTGTACAAAAAGCTTTAG 171
consensus_10822#4 -------------------------------AGTTGGAGCAGCTGTACAAAAAGCTTTAG 138
* * * * ** *
consensus_10822#1 TTAAATCTATTGGTTTATCAAATTTCAACAAACGTCAAATTGAAAATATTCTTAAACATT 420
consensus_10822#2 TTAAATCTATTGGTTTATCAAATTTCAACAAACGTCAAACTGAAAATATTCTTAAACATT 240
consensus_10822#3 GTAATTTCAATTGCACA--AAAGCACAATAGAACACCAGCACAAATTTTGCT---ACGTT 200
consensus_10822#0 --AAGTTGGTTATCGTC----ATTTAGATTGTGCTTATATTTATAAAA------------ 213
consensus_10822#4 --AAGTTGGTTATCGTC----ATTTAGATTGAGCTTATATTTATAAAA------------ 180
** * * * * * *
consensus_10822#1 GTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAAT 480
consensus_10822#2 GTCGTATTAAACCAGCTAATTTACAAATTGAAATTCATGCTAATTTTCCTAATATACAAT 300
consensus_10822#3 ACTTACTTCAACG---TGATATAACCGTTGTA--CCAAAATCAATTACTAATGATAGAAT 255
consensus_10822#0 ATGAAATTGAAGT---TGGTATAGCTTTAGAAGAGTCAATGAAACTTTTAAAATTGAACA 270
consensus_10822#4 ATGAAATTGAACT---TGGTCTAGCTCTAGAAGAGTCAATGAAACTTTTAAAATTGAACA 237
** ** * * ** * * * * * * * *
consensus_10822#1 TAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGT-TCA 539
consensus_10822#2 TAGTTGAATATGCACAATCGATTGGTTTAACTGTAACTGCTTATGCTCCACTTGGT-TCA 359
consensus_10822#3 -AATAGAAAATTTTCAGATATTTGATTTTGAACTAACAAATGATGA-------AAT-GCA 306
consensus_10822#0 GAGATGAATTATTTATCACTTCTAAATTATGGCATACAGGACATGACCCAGAAAATGTCA 330
consensus_10822#4 GAGATGAATGATTTATCACTTCTAAATTATGGCATACAGGACATGACCCAGAAAATGTCA 297
* *** * ** ** *** * **
consensus_10822#1 CCTGCTGCTTCACCAGGAAGAGTTGATTTACTCA-TGGAACCTTGGGTTTTACAAATTGC 598
consensus_10822#2 CCTGCTGCTTCACCAGGAAGAGTTGATTTACTCA-TGGAACCTTGGGTTTTACAAATTGC 418
consensus_10822#3 TCAGCTG-------AATACGAATGGATTAAATCAACGTAAATTTAAAATGCTTGGAATGA 359
consensus_10822#0 AGAGCTTCT-----GTGAAATGTCGCTA-AGAAA-TTTACGGTTAAACTATTTGGACTTG 383
consensus_10822#4 AGAGCTTCT-----GTGAAATGTCGCTATAGAAA-TTTACGGGTAAACTATTTG------ 345
*** * * * * * * * * *
consensus_10822#1 TAAACATCACGGTAAAACACCGGCTCAAGTTCTCTTGCGTTATTTAATTCAAAGAAACTT 658
consensus_10822#2 TAAACAT----------------------------------------------------- 425
consensus_10822#3 T----------------------------------------------------------- 360
consensus_10822#0 TATTTGATACATTTCCCAGTATCTTTCAAGGCTGGTACTTCTGATTTTCCTACAGATGAG 443
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 GATAATAGTTCCAAAGTCTGTAACACCGAAACGAATTGAAGAAAACTTTGGGGTATTTGA 718
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 AATAATAACCCAATCTTTGATACAGTTCCACTTGAAGAAACATGGAAGGCGATGGAAAAC 503
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 TTTCCAACTTTCAAAAGAGGAAATGCATGAATTGAATACAAAAGGTTTGAATGAACGTCA 778
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 CTGGTCGACGAAGGTTTAGTCAAATCGATTGGTTTATCAAATTTCAATAGACGACAAATT 563
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 ATTCAAATTGTTGAAAATGGCTAATCATTCCGAGTATCCATTCAAAGATGCGTATTGAAG 838
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 GAAAATATTCTTAAACATTGTCGTATTAAACCAGTTAATTTGCAAATTGAAGTTCATGCC 623
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 ATTCAATGAATGGAACGTCATTGAAATGAAGGACTTAATTTCATCATACTTTTAAACAAA 898
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 AATTTTCCTAACACAAAATTAGTTGAATATGCTCAGTCAGTCGGTTTGACTGTGACTGCT 683
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 TTCTCTTGGTGTGCTGCTTTTTATTATTAAATAAAATCTAAATCGCTTCAAAAAAAGTTA 958
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 TATGCCCCGCTTGGTTCACCTGCTCGTTCACCTTTATCAGCANATTTATTAACTGAACCT 743
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 ------------------------------------------------------------
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 TGGGTAATTTCAATTGCACAAAAGCACAATAGAACACCAGCACANATTTTGCTACGTTAC 803
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 ------------------------------------------------------------
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 TTACTTCAACGTGATATAACCGTTGTACCANAATCAATTACTAATGATAGAAATATAGAA 863
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 ------------------------------------------------------------
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 NATTTTCAGTTTATCAGCANATTTATTAACTGAACCTTGGNGTATTTCATTGCACAAAGC 923
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 ------------------------------------------------------------
consensus_10822#2 ------------------------------------------------------------
consensus_10822#3 ------------------------------------------------------------
consensus_10822#0 ACATAGACACCGCACNAATTTGCTCGTTACTACTTCACGTGATTACCGTTGACANATCAT 983
consensus_10822#4 ------------------------------------------------------------
consensus_10822#1 ------------------
consensus_10822#2 ------------------
consensus_10822#3 ------------------
consensus_10822#0 ACTATGATGATATAGAAA 1001
consensus_10822#4 ------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||