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Schistosoma mansoni
cluster # 10842 cluster # 10842       Sequences # 23       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10842#0 length = 773 sequences # 20  
consensus_10842#1 length = 354 sequences # 1  
consensus_10842#2 length = 284 sequences # 2  

consensusID : consensus_10842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 20
consensus length = 773
fasta sequence
                              [CCCAGGCCANAATTTGGCACGGTCGGTACTCTATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGACTGGCT-ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA-TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATGCAACTCATTTAATAATCTTAAGACTGGACTAGCTGAGATACAGACTGATGAGATGTACTTCAC]

[+] EMBL CD079752             [CCCAGGCCANAATTTGGCACGAGGGGCACTCTATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGACTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAAat                                                               ]
[+] EMBL CD079539             [                     GTCGGTACTCTATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGATTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAAat                                                               ]
[+] EMBL CD133130             [                   atGTCGGTACTCTATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGACTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGCCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AW017137             [                             TCTATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGACTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACACGGGTATGGTG                                                                                                                                             ]
[+] EMBL AI067537             [                                ATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGACTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGGAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATTACAACGGGAAAAGGTACCAT                                                                                                                                                                                                                          ]
[+] EMBL SMAA18450            [                                                 ATATATTTAGTATAAATCATGAGTTTTATTTGGGACTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGGAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGNTGAGCAAATTGCCCACGCc                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD073805             [                                                       TTAGTATAAATCATGAGTTTTATTTGGGATTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTGATGTAATTTATTTTATAAAAATAAAGAATGC                                                              ]
[-] EMBL CD163192             [                                                        TAGTATAAATCATGAGTTTTATTTGGGATTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGACCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAG                                                                                                                                                                                                                                                                                                         ]
[+] EMBL SM035                [                                                               AATCATGAGTTTTATTTGGGACTGGCT ATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCT  ATAATGCTGGGAAGACAACATTTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD139666             [                                                                        gTTTATTTTGGACT GCTNATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTCACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTA                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD077974             [                                                                                            TCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGAT                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD074012             [                                                                                                          GAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTTTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATGC                                                              ]
[-] EMBL CD076740             [                                                                                                                                                                              CTGGGAAGACAACA TTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTTTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATGC                                                              ]
[+] EMBL CD083978             [                                                                                                                                                                                                                 cgaggGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAG                                                                                                                                                      ]
[+] EMBL CD077384             [                                                                                                                                                                                                                                                                             TGGAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATG                                                               ]
[+] EMBL CD145023             [                                                                                                                                                                                                                                                                               GAATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATGCAACTCATTTAATAATCTTAAGACTGGACTAGCTGAGATACAGACTGATGAGATGTACTTCAC]
[-] EMBL CD202735             [                                                                                                                                                                                                                                                                                 ATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGT                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD081991             [                                                                                                                                                                                                                                                                                 ATGAGATTTACGACATTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATG                                                               ]
[+] EMBL CD183828             [                                                                                                                                                                                                                                                                                                                                     GGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGA                                                                                                                                            ]
[+] EMBL CD183836             [                                                                                                                                                                                                                                                                                                                                     GGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTGTTGAACTATTCAAGTGCAGTATATTAAAACGACAAGGGTATGGTGA                                                                                                                                            ]


>consensus_10842#0 CCCAGGCCANAATTTGGCACGGTCGGTACTCTATCTACGACGACACTCTATATATTTAGT ATAAATCATGAGTTTTATTTGGGACTGGCTATCTGGTTCTGTGTCGAAGGTTCTCAGTTA TCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAA GACAACATTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCA TCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTTGATCTTGGTGG GCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTTGATGGCCTTGTCTT TATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAGGAGTTGGACAATCT CCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGAAACAAAATAGATAA GCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAAC GGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCAT GTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCT TGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATGCAACTCATTT AATAATCTTAAGACTGGACTAGCTGAGATACAGACTGATGAGATGTACTTCAC



consensusID : consensus_10842#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence
                              [TGTTTTGAGTCAAAGAAGGACTTGGACAATGTCGTGCAGGATGAGCAAATGCTCCACGCTCCTATTGTAATACTCGGAACCAAAATAGCTAAGCCCGGTGCAGTTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATGCAACTCATTTAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI394919             [TGTTTTGAGTCAAAGAAGGACTTGGACAATGTCGTGCAGGATGAGCAAATGCTCCACGCTCCTATTGTAATACTCGGAACCAAAATAGCTAAGCCCGGTGCAGTTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAGAATGCAACTCATTTAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10842#1 TGTTTTGAGTCAAAGAAGGACTTGGACAATGTCGTGCAGGATGAGCAAATGCTCCACGCT CCTATTGTAATACTCGGAACCAAAATAGCTAAGCCCGGTGCAGTTAGCGAGGAAGAATTG CGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAA ATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTAT GGTGAGGCGTTTAATTGGCTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATT TATTTTATATTAATAAAGAATGCAACTCATTTAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10842#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 284
fasta sequence
                              [CGTAAATAGGAATTATGTCGGTACTCTATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGATTGGCTATCTGGTTCTGTGTCGAAGGTCCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACATTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTT]

[+] EMBL CD190856             [CGTAAATAGGAATTATGTCGGTACTCTATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGATTGGCTATCTGGTTCTGTGTCGAAGGTCCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACATTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTT]
[+] EMBL CD181091             [          AATTATGTCGGTACTCTATCTACGACGACACTCTATATATTTAGTATAAATCATGAGTTTTATTTGGGATTGGCTATCTGGTTCTGTGTCGAAGGTTCTCAGTTATCTCGGCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAACATTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACG      ]


>consensus_10842#2 CGTAAATAGGAATTATGTCGGTACTCTATCTACGACGACACTCTATATATTTAGTATAAA TCATGAGTTTTATTTGGGATTGGCTATCTGGTTCTGTGTCGAAGGTCCTCAGTTATCTCG GCTTATGGCAAAAAAACGGAAAGCTGGTATTTCTAGGTCTAGATAATGCTGGGAAGACAA CATTATTGCATCGTCTGAAAGATGATCGCATGGCTCAACATGTTCCAACACTTCATCCAA CTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10842#0      -CCCAGGCCANAATTTGGCACG--GTCGGTACTCTATC---TACGACGACACTCTATATA 54
consensus_10842#2      --------CGTAAATAGGAATTATGTCGGTACTCTATC---TACGACGACACTCTATATA 49
consensus_10842#1      TGTTTTGAGTCAAAGAAGGACTTGGACAATGTCGTGCAGGATGAGCAAATGCTCCACGCT 60
                                  **    * *    * *  *    *      *  *   *  *** *    

consensus_10842#0      TTTAGTATAAATCATGAGTTTTATTTGGGACTGGCTATCTGGTTCTGTGTCGAAGGTTCT 114
consensus_10842#2      TTTAGTATAAATCATGAGTTTTATTTGGGATTGGCTATCTGGTTCTGTGTCGAAGGTCCT 109
consensus_10842#1      CCTATTGTAATACTCGGAACCAAAATAGCTAAGCCCGGTGCAGTTAGCGAGGAAGAATTG 120
                         ** * ***  *  *      *  * *    * *        *  * *  ****     

consensus_10842#0      CAGT--TATCTCGGCTTATGGCAAA--AAAACGG--AAAGCTGGTATTTCTAGGTCT-AG 167
consensus_10842#2      CAGT--TATCTCGGCTTATGGCAAA--AAAACGG--AAAGCTGGTATTTCTAGGTCT-AG 162
consensus_10842#1      CGGTACTTCTTGGGGTTACAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAA 180
                       * **  *   * ** ***  *   *  * *****  **** *   ***  **    * * 

consensus_10842#0      ATAATGCTGGGAAGACAACATTATTGCATCGTCTGAAAGATGATCGCATGGCTCAA-CAT 226
consensus_10842#2      ATAATGCTGGGAAGACAACATTATTGCATCGTCTGAAAGATGATCGCATGGCTCAA-CAT 221
consensus_10842#1      ATACCCTCTGGGAGACCTATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTAT 240
                       ***      ** ****    * *     ** * ** *  **  *   * * *      **

consensus_10842#0      GTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACA 286
consensus_10842#2      GTTCCAACACTTCATCCAACTTCTGAAGAATTGTCAATCGGTGGAATGAGATTTACGACA 281
consensus_10842#1      GGTGAGGCGTTTAATTGGCTTGCTCAATA--TCTTGATTAATGACTTACTATTCATGTAA 298
                       * *    *  ** **     * ** ** *  * *  **   **   *   *** * *  *

consensus_10842#0      TTTGATCTTGGTGGGCACGAACAAGCAAGGCGCGTTTGGAAAAATTACATCCCAGCTGTT 346
consensus_10842#2      TTT--------------------------------------------------------- 284
consensus_10842#1      TTTATTTTATATTAATAAAGAATGCAACTCATTTAAAAAAAAAAAAAAAAAAAAAA---- 354
                       ***                                                         

consensus_10842#0      GATGGCCTTGTCTTTATGGTAGATGCATACGATCGTAACAGATTTTTGGAGTCAAAGAAG 406
consensus_10842#2      ------------------------------------------------------------
consensus_10842#1      ------------------------------------------------------------
                                                                                   

consensus_10842#0      GAGTTGGACAATCTCCTGCAGGATGAGCAAATTGCTCACGCTCCTATTTTAATACTCGGA 466
consensus_10842#2      ------------------------------------------------------------
consensus_10842#1      ------------------------------------------------------------
                                                                                   

consensus_10842#0      AACAAAATAGATAAGCCCGGTGCAGCTAGCGAGGAAGAATTGCGGTACTTCTTGGGGTTA 526
consensus_10842#2      ------------------------------------------------------------
consensus_10842#1      ------------------------------------------------------------
                                                                                   

consensus_10842#0      CAGGGGATCACAACGGGAAAAGGTACCATTAATAAAAGTCAAATACCCTCTGGGAGACCT 586
consensus_10842#2      ------------------------------------------------------------
consensus_10842#1      ------------------------------------------------------------
                                                                                   

consensus_10842#0      ATTGAACTATTCATGTGCAGTATATTAAAACGACAAGGGTATGGTGAGGCGTTTAATTGG 646
consensus_10842#2      ------------------------------------------------------------
consensus_10842#1      ------------------------------------------------------------
                                                                                   

consensus_10842#0      CTTGCTCAATATCTTGATTAATGACTTACTATTCATGTAATTTATTTTATATTAATAAAG 706
consensus_10842#2      ------------------------------------------------------------
consensus_10842#1      ------------------------------------------------------------
                                                                                   

consensus_10842#0      AATGCAACTCATTTAATAATCTTAAGACTGGACTAGCTGAGATACAGACTGATGAGATGT 766
consensus_10842#2      ------------------------------------------------------------
consensus_10842#1      ------------------------------------------------------------
                                                                                   

consensus_10842#0      ACTTCAC 773
consensus_10842#2      -------
consensus_10842#1      -------
                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)