These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1102 fasta sequence [CGAGGCGCGGTCCTGTTTGGGAGTCCATTTCGTCCACCTCATACATTCTGATTAAGTAACCAGTAATTATGGTCCTGCACTTTAAGTGTGAACTTGTTCAGCCTCCTTATTTTATTTACATGGGAGAAGATAAACATGAAAATGATGAGCTTATTCGTTGGGGATGGCCAGAGGACGTTTGGTTTCATGTAGATGCTCTATCATCTGCTCATGTTTACCTACGACTGAAGGAAGGGGAAACTTTAGATGATGTCCCCGCTGCCGTTATACAGGACTGTGCACAACTAGTCAAGGAAAACAGCATCCAAGGTTGCAAACTTAACGATGTCACTGTTGTATATACCAAATGGGAGAACCTGAAAAAAACCAATGATATGGATGCTGGCCAAGTCTCCTTTCACAATAATAAAGCAGTTC-AAAAGATCG-TAGTTGAAAAACGCAATGGAGATGT-AATAAAACGACTCAATAAAACAAAAGAGCAATGCCAACATCCTGATTTAAGAGGTGAGAGAGAGAAGCGAGATACTCGCATTAAAAACAAAGAAAAAGCTGCTCTGGCTGCTAAGAAAAAGTCAGAACTTGAGGCACAGAAAGTCCGTGCAGCGGAAGCA-GAAAAAAGATCCTACGATCGTCTGTTTGTTGAGAGTAAGATGAGAACAAATGAAGATGGCTATGATTCGGATGATTTTATGTAAAAAAGAAATATGAGTACCTCCCTACATCTAAAGGTGTCTCATCTCTTAACTTTATTTCCTACTTATCGGTTACTTTTTCTGAATTGTTGATCGTTTCATCTGTAATAAAAACCATTTTGGTTTACTTGTATATATTATAATGTAAATTTTCTTTGCGATTCTATGTTTGATGAGACTGCTCCGGATGCTAACTTTCCATACATAAACGATATAATTGAGATTATGGACCAATCAGTGTTAGATCACGATTGAAAACCTGAAAGCATTTCTGAAGAGTCTTTAACTAGGATAAAACGGTCGTCCAGTGCTTCCACGCTTCATTGACGGTCTAACATTGATCGGTTTATGATCTCAATTGAAACTCAACCATCTCCACAACCCTATTCTAATAAACAATATAATTTAAT] [+] EMBL CD083575 [CGAGGCGCGGTCCTGTTTGGGAGTCCATTTCGTCCACCTCATACATTCTGATTAAGTAACCAGTAATTATGGTCCTGCACTTTAAGTGTGAACTTGTTCAGCCTCCTTATTTTATTTACATGGGAGAAGATAAACATGAAAATGATGAGCTTATTCGTTGGGGATGGCCAGAGGACGTTTGGTTTCATGTAGATGCTCTATCATCTGCTCATGTTTACCTACGACTGAAGGAAGGGGAAACTTTAGATGATGTCCCCGCTGCCGTTATACAGGACTGTGCACAACTAGTCAAGGAAAACAGCATCCAAGGTTGCAAACTTAACGATGTCACTGTTGTATATACCAAATGGGAGAACCTGAAAAAAACCAATGATATGGATGCTGGCCAAGTCTCCTTTCACAATAATAAAGCAGTTC AAAAGATCG TAGTTGAAAAACGCAATGGAGATGT AATAAAACGACTCAATAAAACAAAAGAGCAATGCCAACATCCTGATTTAAGAGGTGAGAGAGAGAAGCGAGATACTCGCATTAAAAACAAAGAAA ] [+] EMBL AI618807 [ ATACATTCTGATTAAGTAACCAGTAATTATGGTCCTGCACTTTAAGTGTGAACTTGTTCAGCCTCCTTATTTTATTTACATGGGAGAAGATAAACATGAAAATGATGAGCTTATTCGTTGGGGATGGCCAGAGNACGTTTGGTTTCATGTAGATGCTCTATCATCTGCTCATGTTTACCTACCACTGAAGGAAGGGGAAACTTTAGATGATGTCCCCGCTGCCGTTATACAGGACTGTGCACAACTAGTCAAGGAAAACAGCATCCAAGGTTGCAAACTTAACGATGTCACTGGTGTATATACC AATGGGAGAACCTGTAAAAAACC ATGATATGGATGCTGGCCAAGTCTCCTTTCACAATAATAAAGCAGTTC AAAAAATCGTTAGTTG AAAACGC ATGGAGATGT AT AAACGACTC ATAAAAC AAAGAGGCATGCC ACATCCT ] [-] EMBL CD131197 [ TTCATGTAGATGCTCTATCATCTGTTCATGTTAACCTACGACTGAAGGAAGGGGAAACTTTAGATGATGTCCCCGCTGCCGTTATACAGGACTGTGCACAACTAGTCAAGGAAAACAGCATCCAAGGTTGCAAACTTAACGATGTCACTGTTGTATATACCAAATGGGAGAACCTGAAAAAAACCAATGATATGGATGCTGGCCAAGTCTCCTTTCACAATAATAAAGCAGTTC AAAGGATCG TAGTTGAAAAACGCAATGGAGATGT AATAAAACGACTCAATAAAACAAAAGAGCAATGCCAACATCCTGATTTAAGAGGTGAGAGAGAGAAGCGAGATACTCGCATTAAAAACAAAG ] [-] EMBL CD077289 [ GCACAACTAGTCAAGGAAAACAGCATCCAAGGTTGCAAACTTAACGATGTCACTGTTGTATATACCAAATGGGAGAACCTGAAAAAAACCAATGATATGGATGCTGGCCAAGTCTCCTTTCACAATAATAAAGCAGTTC AAAAGATCG TAGTTGAAAAACGCAATGGAGATGT AATAAAACGACTCAATAAAACAAAAGAGCAATGCCAACATCCTGATTTAAGAGGTGAGAGAGAGAAGCGAGATACTCGCATTAAAAACAAAGAAAAAGCTGCTCTGGCTGCTAAGAAAAAGTCAGAACTTGAGGCACAGAAAGTCCGTGCAGCGGAAGCA GAAAAAAGATCCTACGATCGTCTGTTTGTTGAGAGTAAGATGAGAACAAATGAAGATGGCTATGATTCGGATGATTTTATGTAAAAAAGAAATATGAGTACCTCCCTACATCTAAAGGTGTCTCATCTCTTAACTTTATTTCCTACTTATCGGTTACTTTTTCTGAATTGTTGATCGTTTCATCTGTAATAAAAACCA ] [+] EMBL CD140016 [ AGCAGTTCAAAAAGATCG TAGTTGAAAAACGCAATGGAGATGT AATAAAACGACTCAATAAAACAAAAGAGCAATGCCAACATCCTGATTTAAGAGGTGAGAGAGAGAAGCGAGATACTCGCATTAAAAACAAAGAAAAAGCTGCTCTGGCTGCTAAGAAAAAGTCAGAACTTGAGGCACAGAAAGTCCGTGCAGCGGAAGCA GAAAAAAGATCCTACGATCGTCTGTTTGTTGAGAGTAAGATGAGAACAAATGAAGATGGCTATGATTCGGATGATTTTATGTAAAAAAGAAATATGAGTACCTCCCTACATCTAAAGGTGTCTCATCTCTTAACTTTATTTCCTACTTATCGGTTACTTTTTCTGAAaagtga ] [+] EMBL CD142252 [ CAATGGAGATGT AATAAAACGACTCAATAAAACAAAAGAG GATGCCAACATCCTGATTTAAGAGGTGAGAGAGAGAAGCGAGATACTCGCATTAAAAACAAAGAAAAAGCTGCTCTGGCTGCTAAGAAAAAGT ] [+] EMBL AW061630 [ AATGGAGATGTGCATAAAACGACTCAATAAAACAAAAGAGCAATGCCAACATCCTGATTTAAGAGGTGAGAGAGAGGAGCGAGATACTCGCATTAAAAACAAAGAAAAAGCTGCTCTGGCTGCTAAGAAAAAGTCAGAACTTGAGGCACAGAAAGTCCGTGCAGC GAAGCAGGAAAAAAGATCCTACGATCGTCTGTTTGTTGAGAGTAAGATGAGAACAAATGAAGATGGCTATGATTCGGATGATTTTATGTAAAAAAGAAATATGAGTACCTCCCTACATCTAAAGGTGTCTCATCTCTTAACTTTATTTCCTACTTATCGGTTACTTTTTCTGAATTGTTGATCGTTTCATCTGTAATAAAAACC ] [-] EMBL CD077052 [ AGCGAGATACTCGCATTAAAAACAAAGAAAAAGCTGCTCTGGCTGCTAAGAAAAAGTCAGAACTTGAGGCACAGAAAGTCCGTGCAGCGGAAGCA GAAAAAAGATCCTACGATCGTCTGTTTGTTGAGAGTAAGATGAGAACAAATGAAGATGGCTATGATTCGGATGATTTTATGTAAAAAAGAAATATGAGTACCTCCCTACATCTAAAGGTGTCTCATCTCTTAACTTTATTTCCTACTTATCGGTTACTTTTTCTGAATTGTTGATCGTTTCATCTGTAATAAAAACCATTTTGGTTTACTTGTATATATTATAATGTAAATTTTCTTTGCGATTCTATGTTTGATGAGACTGCTCCGGATGCTAACTTTCCATACATAAACGATATAATTGAGATTATGGACCAATCAGTGTTAGATCACGATTGAAAACCTGAAAGCATTTCTGAAGAGTCTTTAACTAGGATAAAACGGTCGTCCAGTGCTTCCACGCTTCATTGACGGTCTAACATTGATCGGTTTATGATCTCAATTGAAACTCAACCATCTCCACAACCCTATTCTAATAAACAATATAATTTAAT] [-] EMBL AI723352 [ AAAC AAGAAAAAGCTGCTCTGGCTGCTAAGAAAAAGTCAGAACTTGAGGCACAGAAAGTCCGTGCAGCGGAAGCA GAAAAAAGATCCTACGATCGTCTGTTTGTTGAGAGTAAGATGAGAACAAATGAAGATGGCTATGATTCGGATGATTTTATGTAAAAAAGAAATATGAGTACCTCCCTACATCTAAAGGTGTCTCATCTCTTAACTTTATTTCCTACTTATCGGTTACTTTTTCNNAATTGTTGATCGTTTCATCTGTAATAAAAACCA ] consensusID : consensus_10843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [ATTGAATTTGTGTCATATCAGGTTACGTCTTCAAATACAAATTACCTTTTTTTAGAGCGTATGACAATGTATGATTGGATGACTGTTCGCTTAAATCATTAATAACCTCGACTTTTTAACCAAAGAATAGGCGATGTAATACCTGATGTTTAATCAGTCAGCCACAACGTAGGACAACACACATATATACATCGGTCCAAGTTACCACACCTCGTTAGCACAACAAGATGAACACCAAATTCATAGAAGTGGTTACCCACAGTCTTTAACCATTGGTTGCGATGGGCACGTGGACCCCAACCAATTAGTTTGCATCTACCAACATGGCTCAGACTAGAAGTTAGTGACTTCAAGACTGATGCCAAGTTTTGATTTGGCCGCCCATGACTTTCTTCCAACCGTCTCTAACTGTAGTTAGCATTGCGCGTTGTAGTAATCAGTGTTCAGGCATACGTAACTGTTATATCCTAGTGACGACGTAAGTATAGGTAACTTCCGGNGCCTATTAATGAACTNTTATTCTATATATATCCTTACTTTTTAACTATTAAAGTAA-TAGATTGGGTATATCTATATTCATCTTATT-TATAGCTTCATTNTGACCTGGTGAT--TTATATATACGAANTACTGGCTNCTAAA-TATATNCAGNTNACTGGATATGGNATCCNACGNTCACAGCCACATTCGGCTGGATTTTGAAC-AATATTATTTTCTATTTTATGGTGGGATGCCTGGATTATAAACCGA-TATGCTTG-AATTAATGGGTTGTAAA] [+] EMBL CD083097 [ATTGAATTTGTGTCATATCAGGTTACGTCTTCAAATACAAATTACCTTTTTTTAGAGCGTATGACAATGTATGATTGGATGACTGTTCGCTTAAATCATTAATAACCTCGACTTTTTAACCAAAGAATAGGCGATGTAATACCTGATGTTTAATCAGTCAGCCACAACGTAGGACAACACACATATATACATCGGTCCAAGTTACCACACCTCGTTAGCACAACAAGATGAACACCAAATTCATAGAAGTGGTTACCCACAGTCTTTAACCATTGGTTGCGATGGGCACGTGGACCCCAACCAATTAGTTTGCATCTACCAACATGGCTCAGACTAGAAGTTAGTGACTTCAAGACTGATGCCAAGTTTTGATTTGGCCGCCCATGACTTTCTTCCAACCGTCTCTAACTGTAGTTAGCATTGCGCGTTGTAGTAATCAGTGTTCAGGCATACGTAACTGTTATATCCTAGTGACGACGTAAGTATAGGTAACTTCCGGNGCCTATTAATGAACTNTTATTCTATATATATCCTTACTTTTTAACTATTAAAGTAA TAGATTGGGTATATCTATATTCATCTTATT TATAGCTTCATTNTGACCTGGTGAT TTATATATACGAANTACTGGCTNCTAAA TATATNCAGNTNACTGGATATGGNATCCNACGNTCACAGCCACATTCGGCTGGATTTTGAAC AATATTATTTTCTATTTTATGGTGGGATGCCTGGATTATAAACCGA TATGCTTG AATTAATGGGTTGTAA ] [-] EMBL CD076671 [ ATAGAAGTGGTTACCCACAGTCTTTAACCATTGGTTGCGATGGGCACGTGGACCCCAACCAATTAGTTTGCATCTACCAACATGGCTCAGACTAGAAGTTAGTGACTTCAAGACTGATGCCAAGTTTTGATTTGGCCGCCCATGACTTTCTTCCAACCGTCTCTAACTGTAGTTAGCATTGCGCGTTGTAGTAATCAGTGTTCAGGCATACGTAACTGTTATATCCTAGTGACGACGTAAGTATAGGTAACTTCCGGGGCCTATTAATGAACTTTTATTCTATATATATCCTTACTTTTTAACTATT AAGTAATTAGATTGTGTATATCTATATTCATCTTATTATA AGCTTCATTTTGACCTGTTGATTATTAT TATACGAATTACTGTCTCCTAAATTATATTCAGTTTACTGATTATTGTATCCCACGTTCACAGCCACATTCGGCTGTATCTTGTACAAATATTATTTTCTATTTTATGGTGTGATGCCTGGTATATAAACCGAGTATGCTTGAAATAAATGGTTTGTAta] consensusID : consensus_10843#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [TACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCACTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCAGCAAAGCTCCCAAAATACTACAACCCAACCACTGTCAACGCCGTTAAACTTGCGGAGCAACAACAAAAGCGCAAATTATTGTGGTCAAAAAAAGATGGTGAAAACACTAGTTCTGAAAGTAAAACTCTTTGGACAGCCACATCTTTAATTGCTGGGAAAGGTGATTCTGCAGCTGCAGCTAAA] [+] EMBL CD123376 [TACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCACTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCAGCAAAGCTCCCAAAATACTACAACCCAACCACTGTCAACGCCGTTAAACTTGCGGAGCAACAACAAAAGCGCAAATTATTGTGGTCAAAAAAAGATGGTGAAAACACTAGTTCTGAAAGTAAAACTCTTTGGACAGCCACATCTTTAATTGCTGGGAAAGGTGATTCTGCAGCTGCAGCTAAA] consensusID : consensus_10843#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 497 fasta sequence [AAATACAATCATAAATTAGGGTTTTTGTCTTTTTCACTTTGCATAGCAGAATATGCATTGTAATCTATATGGCTGGATGAACTGAAACCAAGACCGGCGCCTCGCTGAGTATGTGTTATGGTGCGAGACATCTCATATTCGTGTTCAAGTCGCCGGAAAAGTTCAGCTTGCGCTTCAGCTCGACGCAAAGCTTCAGTTTCATTGACATGAGTAGCACTTCCGTCCACGACTTCTTCAGAAGAATCATGAATCCCCATCAATTTCCGAAATTTAGCTGCAGCTGCAGAATCACCTTTCCCAGCAATTAAAGATGTGGCTGTCCAAAGAGTTTTACTTTCAGAACTAGTGTTTTCACCATCTTTTTTTGACCACAATAATTTGCGCTTTTGTTGTTGCTCCGCAAGTTTAACGGCGTTGACAGTGGTTGGGTTGTAGTATTTTGGGAGCTTTGCTGCGGCGGCAGCGGCTAATGCCTGAGCCTTGGCTTGCACTGCTGA] [-] EMBL CD139120 [AAATACAATCATAAATTAGGGTTTTTGTCTTTTTCACTTTGCATAGCAGAATATGCATTGTAATCTATATGGCTGGATGAACTGAAACCAAGACCGGCGCCTCGCTGAGTATGTGTTATGGTGCGAGACATCTCATATTCGTGTTCAAGTCGCCGGAAAAGTTCAGCTTGCGCTTCAGCTCGACGCAAAGCTTCAGTTTCATTGACATGAGTAGCACTTCCGTCCACGACTTCTTCAGAAGAATCATGAATCCCCATCAATTTCCGAAATTTAGCTGCAGCTGCAGAATCACCTTTCCCAGCAATTAAAGATGTGGCTGTCCAAAGAGTTTTACTTTCAGAACTAGTGTTTTCACCATCTTTTTTTGACCACAATAATTTGCGCTTTTGTTGTTGCTCCGCAAGTTTAACGGCGTTGACAGTGGTTGGGTTGTAGTATTTTGGGAGCTCTGCTGCGGCGGCAGCGG GGATGCATGAGCCTTGGCTTGCACTGCTGA] [-] EMBL CD139108 [ TCATAAATTAGGGTGTTTGTCTTTTTCACTTTGCATAGCAGAATATGCATTGTAATCTATATGGCTGGATGAACTGAAACCAAGACCGGCGCCTCGCTGAGTATGTGTTATGGTGCGAGACATCTCATATTCGTGTTCAAGTCGCCGGAAAAGTTCAGCTTGCGCTTCAGCTCGACGCAAAGCTTCAGTTTCATTGACATGAGTAGCACTTCCGTCCACGACTTCTTCAGAAGAATCATGAATCCCCATCAATTTCCGAAATTTAGCTGCAGCTGCAGAATCACCTTTCCCAGCAATTAAAGATGTGGCTGTCCAAAGAGTTTTACTTTCAGAACTAGTGTTTTCACCATCTTTTTTTGACCACAATAATTTGCGCTTTTGTTGTTGCTCCGCAAGTTTAACGGCGTTGACAGTGGTTGGGTTGTAGTATTTTGGGAGCTTTGCTGCGGCGGCAGCGGCTAATGCCTGAGC ] [-] EMBL CD139163 [ GTAATCTATATGGCTGGATGAACTGAAACCCAGACCGGCGCCTCGCTGAGTATGTGTTATGGTGCGAGACATCTCATATTCGTGTTCAAGTCGCCGGAAAAGTTCAGCTTGCGCTTCAGCTCGACGCAAAGCTTCAGTTTCATTGACATGAGTAGCACTTCCGTCCACGACTTCTTCAGAAGAATCATGAATCCCCATCAATTTCCGGAATTTAGCTGCAGCTGCAGAATCACCTTTCCCAGCAATTAAAGATGTGGCTGTCCAAAGAGTTTTACTTTCAGAACTAGTGTTTTCACCATCTTTTTTCGACCACAATAATTTGCGCTTTTGTTGTTGCTCCGCAAGTTTAACGGCGTTGACAGTGGTTGGGTTGTAGTATTTTGGGAGCTTTGCTGCGGCGGCAGCGGCTAATGCCTGAGC ] [-] EMBL CD139156 [ GCTGGATGAACTGAAACCAAGACCGGCGCCTCGCTGAGTATGTGTTATGGTGCGAGACATCTCATATTCGTGTTCAAGTCGCCGGAAAAGTTCAGCTTGCGCTTCAGCTCGACGCAAAGCTTCAGTTTCATTGACATGAGTAGCACTTCCGTCCACGACTTCTTCAGAAGAATCATGAATCCCCATCAATTTCCGAAATTTAGCTGCAGCTGCAGAATCACCTTTCCCAGCAATTAAAGATGTGGCTGTCCAAAGAGTTTTACTTTCAGAACTAGTGTTTTCACCATCTTTTTTTGACCACAATAATTTGCGCTTTTGTTGTTGCTCCGCAAGTTTAACGGCGTTGACAGTGGTTGGGTTGTAGTATTTTGGGAGCTTTGCTGCGGCGGCAGCGGCTAATGCCTGAGC ] [+] EMBL CD160229 [ GAAACCAAGACCGGCGCCTCGCTGAGTATGTGTTATGGTGCGAGACATCTCATATTCGTGTTCAAGTCGCCGGAAAAGTTCAGCTTGCGCTTCAGCTCGACGCAAAGCTTCAGTTTCATTGACATGAGTAGCACTTCCGTCCACGACTTCTTCAGAAGAATCATGAATCCCCATCAATTTCCGAAATTTAGCTGCAGCTGCAGAATCACCTTTCCCAGCAATTAAAGATGTGGCTGTCCAAAGAGTTTTACTTTCAGAACTAGTGTTTTCACCATCTTTTTTTGACCACAATAATTTGCGCTTTTGTTGTTGCTCCGCAAGTTTAACGGCGTTGACAGTGGTTGGGTAGTAGTATATAGGGAGCTTTGCTGCGGCGGCAGCGGCTAATGCCT ] [-] EMBL CD139162 [ GGCGCCTCGCTGAGTATGTGTTATGGTGCGAGACATCTCATATTCGTGTTCAAGTCGCCGGAAAAGTTCAGCTTGCGCTTCAGCTCGACGCAAAGCTTCAGTTTCATTGACATGAGTAGCACTTCCGTCCACGACTTCTTCAGAAGAATCATGAATCCCCATCAATTTCCGGAATTTAGCTGCAGCTGCAGAATCACCTTTCCCAGCAATTAAAGATGTGGCTGTCCAAAGAGTTTTACTTTCAGAACTAGTGTTTTCACCATCTTTTTTCGACCACAATAATTTGCGCTTTTGTTGTTGCTCCGCAAGTTTAACGGCGTTGACAGTGGTTGGGTTGTAGTATTTTGGGAGCTTTGCTGCGGCGGCAGCGGCTAATGCCTGAGC ] consensusID : consensus_10843#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [CGTGCCGCGGGNAATTCGATTACTGCGAACCGGCTTCTTCAAACACGTATACAAGAATTAGAAGAAGATTTAGAAGCGGAACGTGCAGCTCGTTCAAAAGCTGAAAAGAGTCGACAACAANCTTGAAAGTGAATTAGAAGAAGTTGTTGATCGTTTAGAAGAACAAGATGGTGCTACAGCAGCACAAAGTGATTTAACTAAAAAACGTGAGGCTGAATTAATGAAATTAAAACGTGATTTAGAAGATACACATTTACAAAATGAACAAGCTATAGCTACAATGCGTAAAAAACAAAGTGATGCTATTAATGAATTAGCTGATCAATTAGATCAAGCTAATAAAGCTAAAGCAAAAGCTGAAAAAGAACGAAGTCAATTCAAAGCTGNAATTAGATGATGCACATAATCAGGTGGATAGTATTATGAAAGCTAAATTGAATTCCGAGAAAACAGTGAAGGCTCTAGAA] [+] EMBL CD130628 [CGTGCCGCGGGNAATTCGATTACTGCGAACCGGCTTCTTCAAACACGTATACAAGAATTAGAAGAAGATTTAGAAGCGGAACGTGCAGCTCGTTCAAAAGCTGAAAAGAGTCGACAACAANCTTGAAAGTGAATTAGAAGAAGTTGTTGATCGTTTAGAAGAACAAGATGGTGCTACAGCAGCACAAAGTGATTTAACTAAAAAACGTGAGGCTGAATTAATGAAATTAAAACGTGATTTAGAAGATACACATTTACAAAATGAACAAGCTATAGCTACAATGCGTAAAAAACAAAGTGATGCTATTAATGAATTAGCTGATCAATTAGATCAAGCTAATAAAGCTAAAGCAAAAGCTGAAAAAGAACGAAGTCAATTCAAAGCTGNAATTAGATGATGCACATAATCAGGTGGATAGTATTATGAAAGCTAAATTGAATTCCGAGAAAACAGTGAAGGCTCTAGAA] consensusID : consensus_10843#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 412 fasta sequence [GGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGCTTGACTCTAGTCCGACTTTGTGAGGAGACATGATGGATGTAGTATAGGTGGGAG-CTGGGTGCTTC-GGTGTCCA-GCGCAAATGAAATACCACTGCTATCATTGTTTCTTTACTTATTCAGNGAAACGGGAACGAAATTGTATTTTGGTTCAAAGCACATTTCGGGGTGCGTGGTCTATCGCTGCGTGCTTCGATATCTTGGTCATGTCAGATTCCCGATAGTGCATGTGTACACAGGAACAGCTATGACC] [+] EMBL CD179891 [GGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGCTTGACTCTAGTCCGACTTTGTGAGGAGACATGATGGATGTAGTATAGGTGGGAG CTGGGTGCTTC GGTGTCCA GCGCAAATGAAATACCACTGCTATCATTGTTTCTTTACTTATTCAGNGAAACGGGAACGAAA ] [-] EMBL CD061716 [ TGGGAGACTGGGTGCTTCAGGTGTCCANGCGCAAATGAAATACCACTGCTATCATTGTTTCTTTACTTATTCAGTGAAACGGGAACGAAATTGTATTTTGGTTCAAAGCACATTTCGGGGTGCGTGGTCTATCGCTGCGTGCTTCGATATCTTGGTCATGTCAGATTCCCGATAGTGCATGTGTACACAGGAACAGCTATGACC] consensusID : consensus_10843#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [TGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCAGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGAAGG] [+] EMBL CD126908 [TGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCAGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGAAGG] consensusID : consensus_10843#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [GGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGTAGCAAGGAGATGTGTATTTTCGAATTGGAGTGTACTG] [+] EMBL CD167769 [GGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGTAGCAAGGAGATGTGTATTTTCGAATTGGAGTGTACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 ----------------------ATTGAATTTGTGTCATATCAGGTTACGTCTTCAAATAC 38 consensus_10843#0 CGAGGCGCGGTCCTGTTTGGGAGTCCATTTCGTCCACCTCATACATTCTGATTAAGTAAC 60 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ------------------------------------------------------------ consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 AAATTACCTTTTTTTAGAGCGTATGACAATGTATGATTGGATGACTGTTCGCTTAAATCA 98 consensus_10843#0 CAGTAATTATGGTCCTGCACTTTAAGTGTGAACTTGTTCAGCCTCCTTATTTTATTTACA 120 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ------------------------------------------------------------ consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 TTAATAACCTCGACTTTTTAACCAAAGAATAGGCGATGTAATACCTGATGTTTAATCAGT 158 consensus_10843#0 TGGGAGAAGATAAACATGAAAATGATGAGCTTATTCGTTGGGGATGGCCAGAGGACGTTT 180 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ------------------------------------------------------------ consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 CAGCCACAACGTAGGACAACACACATATATACATCGGTCCAAGTTACCACACCTCGTTAG 218 consensus_10843#0 GGTTTCATGTAGATGCTCTATCATCTGCTCATGTTTACCTACGACTGAAGGAAGGGGAAA 240 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ------------------------------------------------------------ consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 CACAACAAGATGAACACCAAATTCATAGAAGTGGTTACCCACAGTCTTTAACCATTGGTT 278 consensus_10843#0 CTTTAGATGATGTCCCCGCTGCCGTTATACAGGACTGTGCACAACTAGTCAAGGAAAACA 300 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ----------------------------------------------------------TA 2 consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 GCGATGGGCACGTGGACCCCAACCAATTAGTTTGCATCTAC-CAACATGGCTCAGACTAG 337 consensus_10843#0 GCATCCAAGGTTGCAAACTTAACGATGTCACTGTTGTATATACCAAATGGGAGAACCTGA 360 consensus_10843#3 -------------AAATACAATCATAAATTAGGGTTTTTGTCTTTTTCACTTTGCATAGC 47 consensus_10843#4 -------------------------------------------CGTGCCGCGGGNAATTC 17 consensus_10843#2 CACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATC 62 consensus_10843#5 -----------GGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGT 49 consensus_10843#7 -------------------------------------GGACTGTGAAGAGGTGTAGTTGT 23 consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 AAGTTAGTGACTTCAAGACTGATGCCAAGTTTTGATTTGGCCGCCCATGACTTTCTTCCA 397 consensus_10843#0 AAAAAACCAATGATATGGATGCTGGCCAAGTCTCCTTTCACAATAATAAAG--CAGTTCA 418 consensus_10843#3 AGAATATGCATTGTAATCTATATGGCTGGATGAACTGAAACCAAGACCGGCGCCTCGCTG 107 consensus_10843#4 GATTACTGCGAACCGGCTTCTTCAAACACGTATACAAGAATTAGAAGAAGATTTAGAAGC 77 consensus_10843#2 GCCAAACCAACACCACCGTCTTCACTC--CTGAAACTCATCAACCAACCACTCTTGTCGC 120 consensus_10843#5 ATCGAG---AGATGTGAGCGAGCGAGTGTATTTTTGA----ATTGGAGTGTACTGACTAG 102 consensus_10843#7 ATCGAG---AGATGTGAGCGAGCGAGTGTATTTTTGGC---GATGGAGAGAGTGGACTGT 77 consensus_10843#6 --------------------------TGTATTTTTGA----ATTGGAGTGTACTGACTAG 30 consensus_10843#1 ACCGTCTCTAACTGTAGTTAGCATTGCGCGTTGTAGTA---ATCAGTGTTCA-GGCATAC 453 consensus_10843#0 AAAGATCGTAGTTGAAAAACGCAATGGAGATGTAATAA---AACGACTCAATAAAACAAA 475 consensus_10843#3 AGTATGTGTTATGGTGCGAGACATCTCATATTCGTGTTCA-AGTCGCCGGAAAAGTTCAG 166 consensus_10843#4 GGAACGTGCAGCTCGTTCAAAAGCTGAAAAGAGTCGACAACAANCTTGAAAGTGAATTAG 137 consensus_10843#2 CGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTA---GTCAGTACACTCCAATTCA 177 consensus_10843#5 ACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGG----TTGGTTGA 158 consensus_10843#7 GAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGTAGCAAGGAGAT--G----TGTATTTT 131 consensus_10843#6 ACGGGAGTATAGTTTTTGTGGCAGTGGCGGTGGCGGCGACAAGAGTGG----TTGGTTGA 86 consensus_10843#1 GTAACTGTTATATCCTAGTGACGACGTAAGTATAGGTAACTTCCGGNG----CCTATTAA 509 consensus_10843#0 AGAGCAATGCCAACATCCTGATTTAAGAGGTGAGAGAGAGAAGCGAGA----TACTCGCA 531 consensus_10843#3 CTTGCGCTTCAGCTCGACGCAAAGCTTCAGTTTCATTGACATGAGTAGCACTTCCGTCCA 226 consensus_10843#4 AAGAAGTTGTTGATCGTTTAGAAGAACAAGATGGTGCTACAGCAGCACAAAGTGATTTAA 197 consensus_10843#2 AAAATACACTCGCTCG-CTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCT 236 * consensus_10843#5 TGAGCTTG---ACTCTAGTCCGACTTTGTGAGGAGACA-TGATGGATGTAGTATAGGTGG 214 consensus_10843#7 CGAATTGG---AGTGTACTG---------------------------------------- 148 consensus_10843#6 TGAGTTTC---AGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTG 143 consensus_10843#1 TGAACTNT---TATTCTATATATATCCTTACTT-TTTAACTATTAAAGTAATAGATTGGG 565 consensus_10843#0 TTAAAAAC---AAAGAAAAAGCTGCTCTGGCTGCTAAGAAAAAGTCAGAACTTGAGGCAC 588 consensus_10843#3 CGACTTCTTCAGAAGAATCATGAATCCCCATCAATTTCCGAAATTTAGCTGCAGCTGCAG 286 consensus_10843#4 CTAAAAAACGTGAGGCTGAATTAATGAAATTAAAACGTGATTTAGAAGATACACATTTAC 257 consensus_10843#2 CTCCATCGC--CAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTC 294 consensus_10843#5 GAGCTGGGTGCTTCGGTGTCC----AGCGCAAATGAAATACCACTGCTATCATTGTTTCT 270 consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 AAGAGGTGTGGTTGGTTGATG----AGTTTCAG-GAGCGAAGACGGTGGTGTTGGTTTGG 198 consensus_10843#1 TATATCTATATTCATCTTATTTA-TAGCTTCATTNTGACCTGGTGATTTATATATACGAA 624 consensus_10843#0 AGAAAGTCCGTGCAGCGGAAGC---AGAAAAAAGATCCTACGATCGTCTGTTTGTTGAGA 645 consensus_10843#3 AATCACCTTTCCCAGCAATTAA---AGATGTGGCTGTCCAAAGAGTTTTACTTTCAGAAC 343 consensus_10843#4 AAAATGAACAAGCTATAGCTAC---AATGCGTAAAAAACAAAGTGATGCTATTAATGAAT 314 consensus_10843#2 TTGTCGCCGCCACCGCCGCCGCAGCAAAGCTCCCAAAATACTACAACCCAACCACTGTCA 354 consensus_10843#5 TTACTTATTCAGNGAAACGGGAACGAAATTGTA-TTTTGGTTCAAAGCACATTTCGGGGT 329 consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 CGATGGAGAGAGTGGACTGTGAAGAGGAAGG----------------------------- 229 consensus_10843#1 NTACTGGCTNCTAAATATATNCAGNTNACTGGA-TATGGNATCCNACGNTCACAGCCACA 683 consensus_10843#0 GTAAGATGAGAACAAATGAAGATGGCTATGATT-CGGATGATTTTATGTAAAAAAGAAAT 704 consensus_10843#3 TAGTGTTTTCACCATCTTTTTTTGACCACAATAATTTGCGCTTTTGTTGTTGCTCCGCAA 403 consensus_10843#4 TAGCTGATCAATTAGATCAAGCTAATAAAGCTAAAGCAAAAGCTGA--AAAAGAACGAAG 372 consensus_10843#2 ACGCCGTTAAACTTGCGGAGCAACAACAAAAGCGCAAATTATTGTGGTCAAAAAAAGATG 414 consensus_10843#5 GCGTGGTCTATCGCTGCGTGCTTCGATATCTTGGTCATGTCAGATTCCCGATAGTGCATG 389 consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 TTCGGCTGGATTTTGAACAATATTATTTTCTATTTTATGGTGGGATGCCTGGATTATAAA 743 consensus_10843#0 ATGAGTACCTCCCTACATCTAAAGGTGTCTCATCTCTTAACTTTATTTCCTACTTATCGG 764 consensus_10843#3 GTTTAACGGCGTTGACAGTGGTTGGGTTGTAGTATTTTGGGAGCTTTGCTGCGGCGGCAG 463 consensus_10843#4 TCAATTCAAAGCTGNAATTAGATGATGCACATAATCAGGTGGATAGTATTATGAAAGCTA 432 consensus_10843#2 GTGAAAACACTAGTTCTGAAAGTAAAACTCTTTGGACAGCCACATCTTTAATTGCTGGGA 474 consensus_10843#5 TGTACACAGGAACAGCTATGACC------------------------------------- 412 consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 CCGATATGCTTGAATTAATGGGTTGTAAA------------------------------- 772 consensus_10843#0 TTACTTTTTCTGAATTGTTGATCGTTTCATCTGTAATAAAAACCATTTTGGTTTACTTGT 824 consensus_10843#3 CGGCTAATGCCTGAGCCTTGGCTTGCACTGCTGA-------------------------- 497 consensus_10843#4 AATTGAATTCCGAGAAAACAGTGAAGGCTCTAGAA------------------------- 467 consensus_10843#2 AAGGTGATTCTGCAGCTGCAGCTAAA---------------------------------- 500 consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 ------------------------------------------------------------ consensus_10843#0 ATATATTATAATGTAAATTTTCTTTGCGATTCTATGTTTGATGAGACTGCTCCGGATGCT 884 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ------------------------------------------------------------ consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 ------------------------------------------------------------ consensus_10843#0 AACTTTCCATACATAAACGATATAATTGAGATTATGGACCAATCAGTGTTAGATCACGAT 944 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ------------------------------------------------------------ consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 ------------------------------------------------------------ consensus_10843#0 TGAAAACCTGAAAGCATTTCTGAAGAGTCTTTAACTAGGATAAAACGGTCGTCCAGTGCT 1004 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ------------------------------------------------------------ consensus_10843#5 ------------------------------------------------------------ consensus_10843#7 ------------------------------------------------------------ consensus_10843#6 ------------------------------------------------------------ consensus_10843#1 ------------------------------------------------------------ consensus_10843#0 TCCACGCTTCATTGACGGTCTAACATTGATCGGTTTATGATCTCAATTGAAACTCAACCA 1064 consensus_10843#3 ------------------------------------------------------------ consensus_10843#4 ------------------------------------------------------------ consensus_10843#2 ------------------------------------------------------------ consensus_10843#5 -------------------------------------- consensus_10843#7 -------------------------------------- consensus_10843#6 -------------------------------------- consensus_10843#1 -------------------------------------- consensus_10843#0 TCTCCACAACCCTATTCTAATAAACAATATAATTTAAT 1102 consensus_10843#3 -------------------------------------- consensus_10843#4 -------------------------------------- consensus_10843#2 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||