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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1823 fasta sequence
[ATTTTCTCCAAGTCCATTATTACTGGGTTTTTTCTTAGTGACTTCATATGTCGNACATAGTTTCACGTTGAAAGTTTAATACAATGGTGTGCAGCACTTTACCTTATGGTAAACTCAAGCCGCAAAAGTTTTGTCATATTTAAAGTTATCACGAACATGGTCAAAAACACACTTAACACACAATTTAGAAACAATTTAGATAACGCGTGATACCATTTTACCCCGTGACTACTTGACTTAGTTATTGTTTCAAAAGTTGATTTGAAGTATCATGTCACGAATATGTTTAAAGTGAAATCTTAGCTTTTCGCCTGAAATTTATTCATACCGAACGAATCAACAACATTTGAAAATATGTCTTGATGGCAACTCGAACCGATGTACGTACGTACGAAGTTCTACGTTGTAACCGACTGACTGACTTGATGAACAGCAGTCATGTTTTTAATCGAGTCTGTCGTATTATTTTGTTAAAGGGAAATGTTGTATTGTGGCGTGAAGGAAATGCTAAGTTATTGTTATCGAAAGATTTTAGTGGTCACGATTGGCAACTGCATGGAGTGAGCAGTATGTGAAACGCGAGTTAACTAGACGAAAATATGGATTTATGTACTTAAAGGCAAGTTTTCCATCGTGGGTTTATAGCAGTCGGTAAGTCTAGCACGAATTAATGAAATAACTTTAACTTGATATCTGTAAGAAAATGTTTACTTAGCATTATATACAAACCTTTCATGATGAGCTGGTACTTACAGGTGATTTTTATTTTGTAAAAAAAGATAACTTTGGATTTCCAAATTTTGTAGAAATCTACATAAGTGAAGTTTAGTGGTTTCTAAATGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACTGNGGAATTTATCATTTTACTTGAAATATAAAGTAAAAGTGCATACTCAACTCCAT-AAAGGTTATATAAATGTCACATATGAGAAACATTTTGTTGAGACTGATCATCACGAATAAACAAAAAATTCACGTTTAAGAAAAAGTGCTAACCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACTTCTAAATTAAGCACTACTCAGTAGACTTACCTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTCTATCAAGATTAAGGAAGCATTAAAAGAGACATACACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCCTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTCTTTGAATCCCCTTGGACAGGTCTCACGTTCAGAGCATCACTTGACTTGGTTTCTTGAAGACGAGACAGAATTTCTGTTACAAGTAACTTGCAAACTACACTTTAGACCAAATCAGTGCCCAACCTTCACATTTAGATGGTAAGATGACATCATTCACAATTTCCCCTCCCATCATCTTGTGTAAACCTTGAACTTGGTATCGTTCCC]
[-] EMBL CD137424 [ATTTTCTCCAAGTCCATTATTACTGGGTTTTTTCTTAGTGACTTCATATGTCGNACATAGTTTCACGTTGAAAGTTTAATACAATGGTGTGCAGCACTTTACCTTATGGTAAACTCAAGCCGCAAAAGTTTTGTCATATTTAAAGTTATCACGAACATGGTCAAAAACACACTTAACACACAATTTAGAAACAATTTAGATAACGCGTGATACCATTTTACCCCGTGACTACTTGACTTAGTTATTGTTTCAAAAGTTGATTTGAAGTATCATGTCACGAATATGTTTAAAGTGAAATCTTAGCTTTTCGCCTGAAATTTATTCATACCGAACGAATCAACAACATTTGAAAATATGTCTTGATGGCAACTCGAACCGATGTACGTACGTACGAAGTTCTACGTTGTAACCGACTGACTGACTTGATGAACAGCAGTCATGTTTTTAATCGAGTCTGTCGTATTATTTTGTTAAAGGGAAATGTTGTATTGTGGCGTGAAGGAAATACTAAGTTATTGTTATCGAAAGATTTTAGTGGTCACGATTGGCAACTGCATGG ]
[+] EMBL CD170555 [ AATGTTGTATTGTGGCGTGAAGGAAATGCTAAGTTATTGTTATCGAAAGATTTTAGTGGTCACGATTGGCAACTGCATGGAGTGAGCAGTATGTGAAACGCGAGTTAACTAGACGAAAATATGGATTTATGTACTTAAAGGCAAGTTTTCCATCGTGGGTCTATAGCAGTCGGTAAGTCTAGCACGAATTAATGAAATAACTTCAACTTGATATCTGTAAGAAAATGTTTACTTAGCATTATATACAAACCTTTCATGATGAGCTGGTACTTACAGGTGATTTTTATTTTGTAAAAAAAGATAACTTTGGATTTCCAAATTTTGTAGAAATCTACATAAGTGAAGTTTAGTGGTTTCTAAATGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACTGNGGAAATTATCATTNTACTTGAAATATANAGTANNAGT ]
[+] EMBL CD170510 [ AATGTTGTATTGTGGCGTGAAGGAAATGCTAAGTTATTGTTATCGAAAGATTTTAGTGGTCACGATTGGCAACTGCATGGAGTGAGCAGTATGTGAAACGCGAGTTAACTAGACGAAAATATGGATTTATGTACTTAAAGGCAAGTTTTCCATCGTGGGTTTATAGCAGTCGGTAAGTCTAGCACGAATTAATGAAATAACTTTAACTTGATATCTGTAAGAAAATGTTTACTTAGCATTATATACAAACCTTTCATGATGAGCTGGTACTTACAGGTGATTTTTATTTTGTAAAAAAAGATAACTTTGGATTTCCAAATTTTGTAGAAATCTACATAAGTGAAGTTTAGTGGTTTCTAAATGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACTNGGGAATTTATCATTNTACTTGAAATANTAAGTANAAGT ]
[+] EMBL CD170528 [ AATGTTGTATTGTGGCGTGAAGGAAATGCTAAGTTATTGTTATCGAAAGATTTTAGTGGTCACGATTGGCAACTGCATGGAGTGAGCAGTATGTGAAACGCGAGTTAACCAGACGAAAATATGGATTTATGTACTTAAAGGCAAGTTTTCCATCGTGGGTTTATAGCAGTCGGTAAGTCTAGCACGAATTAATGAAATAACTTTAACTTGATATCTGTAAGAAAATGTTTACTTAGCATTATATACAAACCTTTCATGATGAGCTGGTACTTACAGGTGATTTTTATTTTGTAAAAAAAGATAACTTTGGATTTCCAAATTTTGTAGAAATCTACATAAGTGAAGTTTAGTGGTTTCTAAATGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACCGNGGAATTT ]
[+] EMBL CD170527 [ AATGTTGTATTGTGGCGTGAAGGAAATGCTAAGTTATTGTTATCGAAAGATTTTAGTGGTCACGATTGGCAACTGCATGGAGTGAGCAGTATGTGAAACGCGAGTTAACCAGACGAAAATATGGATTTATGTACTTAAAGGCAAGTTTTCCATCGTGGGTTTATAGCAGTCGGTAAGTCTAGCACGAATTAATGAAATAACTTTAACTTGATATCTGTAAGAAAATGTTTACTTAGCATTATATACAAACCTTTCATGATGAGCTGGTACTTACAGGTGATTTTTATTTCGTAAAAAAAGATAACTTTGGATTTCCAAATTTTGTAGAAATCTACATAAGTGAAGTTTAGTGGTTTCTAAATGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACCGNGGAATTTATCATTTTA ]
[+] EMBL CD170636 [ AATGTTGTATTGTGGCGTGAAGGAAATGCTAAGTTATTGTTATCGAAAGATTTTAGTGGTCACGATTGGCAACTGCATGGAGTGAGCAGTATGTGAAACGCGAGTTAACTAGACGAAAATATGGATTTATGTACTTAAAGGCAAGTTTTCCATCGTGGGTTTATAGCAGTCGGTAAGTCTAGCACGAATTAATGAAATAACTTTAACTTGATATCTGTAAGAAAATGTTTACTTAGCATTATATACAAACCTTTCATGATGAGCTGGTACTTACAGGTGATTTTTATTTTGTAAAAAAAGATAACTTTGGATTTCCAAATTTTGTAGAAATCTACATAAGTGAAGTTTAGTGGTTTCTAAATGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACTGNng ]
[-] EMBL CD170625 [ CTTTGTATTTCCAAATTNTGTAGAAATCTACATAAGTGAAGTTTAGTGGTTTCTAAATGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATCTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACTGGGGAATTTATCATTTTACTTGAAATATAAAGTAAAAGTGCATACTCAACTCCATAAAAGGTTATATAAATGTCACATATGAGAAACATTTTGTTGAGACTGATCATCACGAATAAACAAAAAATTCACGTTTAAGAAAAAGTGCTAACCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACTTCTAAATTAAGCACTACTCAGTAGACTTACCTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTAT ]
[-] EMBL CD170616 [ TTCCAAATTTTGTAGAAATCTACATAAGTGAAGTNTAGTGGTTTCTAAATGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACTGGGGAATTTATCATTTTACTTGAAATATAAAGTAAAAGTGCATACTCAACTCCAT AAAGGTTATATAAATGTCACATATGAGAAACATTTTGTTGAGACTGATCATCACGAATAAACAAAAAATTCACGTTTAAGAAAAAGTGCTAACCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACTTCTAAATTAAGCACTACTCAGTAGACTTACCTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTAT ]
[-] EMBL CD170622 [ TTCGCTGACTGGGGAATTTATCATTTTACGTGAAATATAAAGTAAAAGTGCATACTCAGCTCCATAAAAGGTTATATAAATGTCACATATGAGAAACATTTTGTTGAGACTGATCATCACGAATAAACAAAAAATTCGCGTGTAAGAAAAAGTGCTAACCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACTTCTAAATTAAGCACTACTCAGTAGACTTACCTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTAT ]
[-] EMBL CD189244 [ CAAGTGGGAT CCCTTCTAAATTAAGCACTACTCAGTAGACTTCCCTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTCTATCAAGATTAAGGAAGCATTAAAAGAGACATACACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCCTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTCTTTGAATCCCCTTGGACAGGTCTCACGTTCAGAGCATCACTTGACTTGGTTTCTTGAAGACGAGACAGAATTTCTGTTACAAGTAACTTGCAAACTACACTTTAGACCAAATCAGTGCCCAACCTTCACATTTAGATGGTAAGATGACATCATTCACAATTTCCCCTCCCATCATCTTGTGTAAACCTTGAACTTGGTATCGTTCCC]
consensusID : consensus_10847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 707 fasta sequence
[CAGTATTTATTTGAAAAAGGAATATACAATACAATTATTGGTCAGTAAAAAAAGTTCACTTGAAATGTAGTTACACGTGCAAAAACCCCATGAATCTAAATGTAGAACCAATAAAAACTAGTCAAGAGACGCTAATATGTTGTACATAAATTATAACTCTTCCGACTGGTGTAATTCTGGTGAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTGACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTCTAATAAGTGATAAAGTAAACCAAGGTAAAGACCAACGATGTTTCATATTTAACCTTCTTTGAATCCCCTTGGACAGATCTCACGTTCAGAGCATCACTTGACTTGGTTTCTCCTCGTGCCGAATTCGTGCCTCGAGGCCAA]
[+] EMBL CD072886 [CAGTATTTATTTGAAAAAGGAATATACAATACAATTATTGGTCAGTAAAAAAAGTTCACTTGAAATGTAGTTACACGTGCAAAAACCCCATGAATCTAAATGTAGAACCAATAAAAACTAGTCAAGAGACGCTAATATGTTGTACATAAATTATAACTCTTCCGACTGGTGTAATTCTGGTGAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTGACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCANATAGGAGGATCTTCCAGAACTTCATAn ]
[-] EMBL CD078328 [ AGTATTTATTTGAAAAAGGAATATACAATACAATTATTGGTCAGTAAAAAAAGTTCACTTGAAATGTAGTTACACGTGCAAAAACCCCATGAATCTAAATGTAGAACCAATAAAAACTAGTCAAGAGACGCTAATATGTTGTACATAAATTATAACTCTTCCGACTGGTGTAATTCTGGTGAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTGACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCT ]
[-] EMBL CD078248 [ AGTATTTA TNGAAAAAGGAATATACAATACAATTATTGGTCAGTAAAAAAAGTTCACTTGAAATGTAGTTACACGTGCAAAAACCCCATGAATCTAAATGTAGAACCAATAAAAACTAGTCAAGAGACGCTAATATGTTGTACATAAATTATAACTCTTCCGACTGGTGTAATTCTGGTGAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTGACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCT ]
[-] EMBL CD084153 [ AACTCTTCCGACTGGTGTAATTCTGGTAAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTCTAATAAGTGATAAAGTAAACCAAGGTAAAGACCAACGATGTTTCATATTTAACCTTCTTTGAATCCCCTTGGACAGATCTCACGTTCAGAGCATCACTTGACTTGGTTTCTCCTCGTGCCGAATTCGTGCCTCGAGGCCAA]
consensusID : consensus_10847#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 587 fasta sequence
[GGTGAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACCGGGGAATTTATCATTTTACTTGAGAAGATTTGTCTAGAACATTTTCACGGCAGAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTGACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTCTTTGAA]
[+] EMBL CD133396 [GGTGAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCTCAAGTTCCGAACCTTTCCTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGTTAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGGTCATATTTCACTGACCGGGGAATTTATCATTTTACTTGAGAAGATTTGTCTAGAACATTTTCACGGCAGAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTGACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCANAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACCTTGTATTGAAGTAACCTGCTGCAAATAGGACGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATNGTTCATATTTAACCctg ]
[+] EMBL CD189168 [ ACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATCTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTCTTTGAA]
[-] EMBL CD188496 [ CAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTCT ]
consensusID : consensus_10847#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 407 fasta sequence
[GTAAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTC]
[-] EMBL CD183375 [GTAAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGATTTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAAAACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTC]
[+] EMBL CD189937 [ ACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTC]
[+] EMBL CD189959 [ ACAAGTGGGATACACTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTT ]
[-] EMBL CD183409 [ CAAGTGGGATACACTCCTTGAATAAGGTTGTTACCTCTACTGATGGTTTATCCCACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTACCAGTTCCGTAAGGGATTTCATCGTCTGGGGTGTACCTTTATCAAATCTGCTACTGTCTTGACGCTCTTTATGAACTTTGTATTGAAGTAACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTGATGTTTCATATTTAACCTTC]
consensusID : consensus_10847#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence
[TTGAATCCCCTTGGACAGATCTCACGTTCAGAGCATCACTTGACTTGGTTTCTTGAAGACGAGACAGAATTTCTGTTACAAGTAACTTGCAAACTTCACATTTAGATGGTAAGATGACATCATTGGGAATTTCCCCTCTAACAAACGTAAGAAAGACCATCATGGAGAAGACATGTAAAATCATGACAAAAACACTGCTTTTCTATCAATTATAAAACCGCTTGGGACGGTTAAATCAGAGATTATA]
[+] EMBL CD181105 [TTGAATCCCCTTGGACAGATCTCACGTTCAGAGCATCACTTGACTTGGTTTCTTGAAGACGAGACAGAATTTCTGTTACAAGTAACTTGCAAACTTCACATTTAGATGGTAAGATGACATCATTGGGAATTTCCCCTCTAACAAACGTAAGAAAGACCATCATGGAGAAGACATGTAAAATCATGACAAAAACACTGCTTTTCTATCAATTATAAAACCGCTTGGGACGGTTAAATCAGAGATTATA]
consensusID : consensus_10847#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 87 fasta sequence
[AGAAGGTTAAATATGAAACATCGTTGGTCTTTACCTTGGTTTACTTTATCACTTATTAGAGAACTTAGACTTTATGATTTGTCTTTT]
[+] EMBL CD189304 [AGAAGGTTAAATATGAAACATCGTTGGTCTTTACCTTGGTTTACTTTATCACTTATTAGAGAACTTAGACTTTATGATTTGTCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 ATTTTCTCCAAGTCCATTATTACTGGGTTTTTTCTTAGTGACTTCATATGTCGNACATAG 60
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 TTTCACGTTGAAAGTTTAATACAATGGTGTGCAGCACTTTACCTTATGGTAAACTCAAGC 120
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 CGCAAAAGTTTTGTCATATTTAAAGTTATCACGAACATGGTCAAAAACACACTTAACACA 180
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 CAATTTAGAAACAATTTAGATAACGCGTGATACCATTTTACCCCGTGACTACTTGACTTA 240
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 GTTATTGTTTCAAAAGTTGATTTGAAGTATCATGTCACGAATATGTTTAAAGTGAAATCT 300
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 TAGCTTTTCGCCTGAAATTTATTCATACCGAACGAATCAACAACATTTGAAAATATGTCT 360
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 TGATGGCAACTCGAACCGATGTACGTACGTACGAAGTTCTACGTTGTAACCGACTGACTG 420
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 ACTTGATGAACAGCAGTCATGTTTTTAATCGAGTCTGTCGTATTATTTTGTTAAAGGGAA 480
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 ATGTTGTATTGTGGCGTGAAGGAAATGCTAAGTTATTGTTATCGAAAGATTTTAGTGGTC 540
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 ACGATTGGCAACTGCATGGAGTGAGCAGTATGTGAAACGCGAGTTAACTAGACGAAAATA 600
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 TGGATTTATGTACTTAAAGGCAAGTTTTCCATCGTGGGTTTATAGCAGTCGGTAAGTCTA 660
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 GCACGAATTAATGAAATAACTTTAACTTGATATCTGTAAGAAAATGTTTACTTAGCATTA 720
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 TATACAAACCTTTCATGATGAGCTGGTACTTACAGGTGATTTTTATTTTGTAAAAAAAGA 780
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 TAACTTTGGATTTCCAAATTTTGTAGAAATCTACATAAGTGAAGTTTAGTGGTTTCTAAA 840
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 TGTTACAAAAGCGTGTAATATATGGTAGTTTATTTACTCACTCAAGTTCCGAACCTTTCC 900
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------------------------
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ---------------------------------------------------------GGT 3
consensus_10847#0 TTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACACAATATACGTAGT 960
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 CAGTATTTAT-TTGAAAAAGGAATATACAATACAATTATTGGTCAGTAAAAAAAGTTCAC 59
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 GAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACC--TCAAGTTCCGAACCTTTC 61
consensus_10847#0 TAATAATTTGGTGATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAACGAAACTAGG 1020
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 TTGAAATGTAGTTACACGTGCAAAAACCCCATGAATCTAAATGTAGAACCAA----TAAA 115
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 CTTGACCAACATGATTTTGGCAGCGACATAATATCCCTTTCTTTCACAC-AA----TATA 116
consensus_10847#0 TCATATTTCACTGACTGNGGAATTTATCATTTTACTTGAAATATAAAGTAAAAGTGCATA 1080
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 AACTAGTCAAGAGACGCTA---ATATGTTGTACATAAATTATAACTCTTCCGACTGGTGT 172
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 CGTAGTTAATAATTTGGTG---ATTTCGTGCATTTGATTTAGAACTCGGTGGCATTAAAC 173
consensus_10847#0 CTCAACTCCATAAAGGTTATATAAATGTCACATATGAGAAACATTTTGTTGAGACTGATC 1140
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 AATTCTGGTGAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGAT 232
consensus_10847#3 -------GTAAATGTTTGGGTTGATTTGGAGATTTTTCATTCAAGCACCCTTGAGAAGAT 53
consensus_10847#2 GAAACTAGGTCATATTTCA-CTGACCGGGGAATTTATCATTTTA-----CTTGAGAAGAT 227
consensus_10847#0 ATCACGAATAAACAAAAAATTCACGTTTAAGAAAAAGTGCTAA-----CCTTGAGAAGAT 1195
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 TTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAA 292
consensus_10847#3 TTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAA 113
consensus_10847#2 TTGTCTAGAACATTTTCACGGCAGAGGTAATCATAAAGATTTATATCTTGATTGCTGTAA 287
consensus_10847#0 TTGTCTAGAACATTTTCACGGCAAAGGTAATCATAAAGATTTATATCTTGATTGCTGTAA 1255
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 AACCATTCTTCTATAATGTCTTGGTATTCATTGACAAGTGGGATACACT----------- 341
consensus_10847#3 AACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACT----------- 162
consensus_10847#2 AACCATTCTTCTATAATGTCTTGGTATTCATTGACAAGTGGGATACACT----------- 336
consensus_10847#0 AACCATTCTTCTATAATGTCTTGGTATTCATTAACAAGTGGGATACACTTCTAAATTAAG 1315
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ---------------------CCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCC 380
consensus_10847#3 ---------------------CCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCC 201
consensus_10847#2 ---------------------CCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCC 375
consensus_10847#0 CACTACTCAGTAGACTTACCTCCTTGAATAAGGTTGTTACTTCTACTGATGGTTTATCCC 1375
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 -------------TTGAATCCCCTTGGACAGATCTCACGTTCAGAGCATCACTTGACTTG 47
consensus_10847#1 ACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTT---------------- 424
consensus_10847#3 ACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTT---------------- 245
consensus_10847#2 ACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTT---------------- 419
consensus_10847#0 ACAGCTCAAAAGGGACATCCAGCTTCACATCAACGCCACGGTTTCTATCAAGATTAAGGA 1435
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 GTTTCTTGAAGACGAGACAGAATTTCTGTTACAAGTAACTTGCAAACTT----------- 96
consensus_10847#1 -------------------ACCAGTTCCGTA-AGGGATTTCATCGTCTGGGGTGTACCTT 464
consensus_10847#3 -------------------ACCAGTTCCGTA-AGGGATTTCATCGTCTGGGGTGTACCTT 285
consensus_10847#2 -------------------ACCAGTTCCGTA-AGGGATTTCATCGTCTGGGGTGTACCTT 459
consensus_10847#0 AGCATTAAAAGAGACATACACCAGTTCCGTA-AGGGATTTCATCGTCTGGGGTGTACCTT 1494
consensus_10847#5 ------------------AGAAGGTTAAATA-TGAAA---CATCGT-TGGTCTTTACCTT 37
consensus_10847#4 -------------------CACATTTAGATGGTAAGATGACATCATTGGGAATTTCCCCT 137
** * * **** * ** * * ** *
consensus_10847#1 -TATCAAATCTG-------CTACTGTCTTGACGCTCTTTATGAACTTTGTATTGA-AGTA 515
consensus_10847#3 -TATCAAATCTG-------CTACTGTCTTGACGCTCTTTATGAACTTTGTATTGA-AGTA 336
consensus_10847#2 -TATCAAATCTG-------CTACTGTCTTGACGCTCTTTATGAACTTTGTATTGA-AGTA 510
consensus_10847#0 -TATCAAATCTG-------CTACTGTCCTGACGCTCTTTATGAACTTTGTATTGA-AGTA 1545
consensus_10847#5 -GGTTTACTTTA-------TCACT-TATTAGAGAACTT---AGACTTTAT----G-ATTT 80
consensus_10847#4 CTAACAAACGTAAGAAAGACCATCATGGAGAAGACATGTAAAATCATGACAAAAACACTG 197
* * * * * * * * * *
consensus_10847#1 ACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTCTAATAAGTG 575
consensus_10847#3 ACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTG----ATGTT 392
consensus_10847#2 ACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTG----ATGTT 566
consensus_10847#0 ACCTGCTGCAAATAGGAGGATCTTCCAGAACTTCATAAAGTCTAAGTTCTG----ATGTT 1601
consensus_10847#5 GTCTTTT----------------------------------------------------- 87
consensus_10847#4 CTTTTCTATCAATTATAAAACCGCTTGGGACGGT-TAAATCAGAGATTATA--------- 247
* *
consensus_10847#1 ATAAAGTAAACCAAGGTAAAGACC------AACGATGTTTCATATTTAACCTTCTTTGAA 629
consensus_10847#3 TCATATTTAACCTTC--------------------------------------------- 407
consensus_10847#2 TCATATTTAACCTTCTTTGAA--------------------------------------- 587
consensus_10847#0 TCATATTTAACCTTCTTTGAATCCCCTTGGACAGGTCTCACGTTCAGAGCATCACTTGAC 1661
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 TC---CCCTTGGACAGATCTCACGTTCAGAGCATCACTTGACTTG---GTTTCTCCTCGT 683
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 TTGGTTTCTTGAAGACGAGACAGAATTTCTGTTACAAGTAACTTGCAAACTACACTTTAG 1721
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 GCCGAATTCGTGCCTCGAGGCCAA------------------------------------ 707
consensus_10847#3 ------------------------------------------------------------
consensus_10847#2 ------------------------------------------------------------
consensus_10847#0 ACCAAATCAGTGCCCAACCTTCACATTTAGATGGTAAGATGACATCATTCACAATTTCCC 1781
consensus_10847#5 ------------------------------------------------------------
consensus_10847#4 ------------------------------------------------------------
consensus_10847#1 ------------------------------------------
consensus_10847#3 ------------------------------------------
consensus_10847#2 ------------------------------------------
consensus_10847#0 CTCCCATCATCTTGTGTAAACCTTGAACTTGGTATCGTTCCC 1823
consensus_10847#5 ------------------------------------------
consensus_10847#4 ------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||