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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 669 fasta sequence
[TTTTTTTTTTTTAACGGGAAAAAATTTATCAGGAAGCTTATATTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACC-GGGCACTACGACTTTGAGCATCATCTCACAC-GGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCG------CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACGGTTCACAGGAAACGAGCCTAC]
[-] EMBL SM58061 [TTTTTTTTTTTTAACGGGAAAAAA TTATCAGG AGC TATA TTCAATTTAATGCATTCGCCCTGTCGTGAGTGCAGGGCGAAAGTGTACC GGGCACTACGACTTTGAGCATCATCTCACACGGGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGC ]
[-] EMBL AI395779 [ TTTTTAACGGGAAAAAATTTATCAGGAAGCTTATATTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGCGCGAAAGTGTACC GGGCACTACGACTTTGAGCATCATCTCACAC GGACTTCGTTCACGCCTCCACATTGCATCGAC ]
[+] EMBL AI975799 [ AAAAATTTATCAGGAAGCTTGTTTTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACCGGGGCACTACGACTTTGAGCATCATCTCACAC GGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCG GCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCA ]
[-] EMBL AA559799 [ AAAAATTTATCAGGAAGCTTATATTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACC GGGCACTACGACTTTGAGCATCATCTCACAC GGACTTNGTTCACGCCTCCACATTGCATNGACTTGCTATATGGCCATAACCATGGCANTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTT ]
[+] EMBL AI975471 [ AAAAATTTATCAGGAAGCTTGTATTTCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACCGGGGCACTACGACTTTGAGCATCATCTCACAC GGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCG CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCA ]
[+] EMBL AI976958 [ CTTATATTGCAATTTAATGCATTCGCCTTGTCGTGAGTGCAGGGCGAAAGTGTACC GGGCACTACGACTTTGAGCATGATCTCACAC GGACTTAGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGAGACCATATTTATTACATCTGAAGCATAACGAGTCGCTATTATTATTTGGGCAGTTTCAAACGATGTGGCCTGACTCACCACAACTGTTACAACGCCCACCACCACCACCACCGGCTCCACCATTATAGCCACTATCACCTCGCT ]
[-] EMBL CD131785 [ TGGCCATAACCATGGCACTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACC ]
[+] EMBL CD142657 [ CTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGCGCCGCTATTATTATTTGGGCAGATTCGA ]
[-] EMBL CD144296 [ CGATGTGGCCTGACTCACCACAACTGTAANAAGGCCCACCACCACCACCACCGCNTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAAT ]
[+] EMBL CD146133 [ CCACCACCACCGCCTCCA CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATATCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCA ]
[-] EMBL CD146612 [ gCCTCCA CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCcg ]
[-] EMBL AI976012 [ tCCG CCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCTCCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAG ]
[-] EMBL CD134120 [ CATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCTCAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTC ]
[+] EMBL CD144428 [ TATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGANACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACGGTTCACAGGAAACGAGCCT ]
[+] EMBL CD144149 [ TATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGCGCAAAGTGTCCCGTCCCACCACAGTTGAGACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCGCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAAT ]
[+] EMBL CD142831 [ TATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCAAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACC ]
[+] EMBL CD144169 [ TATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGAGCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACG ]
[-] EMBL CD138934 [ ATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCA ]
[+] EMBL CD146150 [ CACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTACCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACC ]
[+] EMBL CD146189 [ CACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACC ]
[-] EMBL CD148234 [ ACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA ]
[-] EMBL CD142927 [ ACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACGGTTCACAGGAAACGAGTCTAC]
consensusID : consensus_10850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence
[CGGGCAGCATCATCTCCCCAAATAATAATAGCGACACGCTATGCTACAGATGTAATAAATATGGTCACTTCGCGAGAGACTGTACGGAAAGTGGAGGTTCTGGTCCGCAC]
[+] EMBL CD168441 [CGGGCAGCATCATCTCCCCAAATAATAATAGCGACACGCTATGCTACAGATGTAATAAATATGGTCACTTCGCGAGAGACTGTACGGAAAGTGGAGGTTCTGGTCCGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10850#0 TTTTTTTTTTTTAACGGGAAAAAATTTATCAGGAAGCTTATATTTCAATTTAATGCATTC 60
consensus_10850#1 ------------------------------------------------------------
consensus_10850#0 GCCTTGTCGTGAGTGCAGGGCGAAAGTGTACCGGGCACTACGACTTTGAGCATCATCTCA 120
consensus_10850#1 ------------------------------------------------------------
consensus_10850#0 CACGGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGCA 180
consensus_10850#1 ------------------------------------------------------------
consensus_10850#0 CTTATAGCACTGGGGACCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATA 240
consensus_10850#1 ------------------------------------------------------------
consensus_10850#0 TTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTG 300
consensus_10850#1 -------------------------------------------------CGGGCAGCATC 11
** * *
consensus_10850#0 GCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCATTATAGCCACT 360
consensus_10850#1 ATCT--CCCCAAATAATAATAGCGACACGCTATGCTACAGATGTAATAAATATGGTCACT 69
** * * * ** ** * ** * * * ** * *** * ****
consensus_10850#0 AT-CACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGT 419
consensus_10850#1 TCGCGAGAGACTGTACGGAAAGTGGAGGTTCTGGTCCGCAC------------------- 110
* **** ** * ** * *** ** * *
consensus_10850#0 TGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTC 479
consensus_10850#1 ------------------------------------------------------------
consensus_10850#0 GTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAAT 539
consensus_10850#1 ------------------------------------------------------------
consensus_10850#0 CGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATAC 599
consensus_10850#1 ------------------------------------------------------------
consensus_10850#0 ACTAACAGACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAACGGTTCACAGGAA 659
consensus_10850#1 ------------------------------------------------------------
consensus_10850#0 ACGAGCCTAC 669
consensus_10850#1 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||