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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[TCCCACTTCGTTTCCCACTTAGCCAATATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGTGTCCGGACGTTAGCACCCGGTGCACTGTCTCCCAAGCTGTACTCATCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGCTCTACCCCCGACGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCTATCTCCAGGTTAGCTCAGCCGGGTGTTGGATGTCCCGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGGCGGCTTGCCGCCGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGGGTATTCTAAGGCGCTTGAGAGAACTCTGGAGAAGGAACTCGGCAAATTGACACCGNTACTTCGGAAGAAGGTGTGCCTTTAGTAGGTGAACCCGTACAGGGGG]
[+] EMBL CD086867 [TCCCACTTCGTTTCCCACTTAGCCAATATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGTGTCCGGACGTTAGCACCCGGTGCACTGTCTCCCAAGCTGTACTCATCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGCTCTACCCCCGACGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCTATCTCCAGGTTAGCTCAGCCGGGTGTTGGATGTCCCGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGGCGGCTTGCCGCCGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGGGTATTCTAAGGCGCTTGAGAGAACTCTGGAGAAGGAACTCGGCAAATTGACACCGNTACTTCGGAAGAAGGTGTGCCTTTAGTAGGTGAACCCGTACAGGGGG]
consensusID : consensus_10853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 401 fasta sequence
[AAAACTCTTTGGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA-------T----CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC-GATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGGTCAGTGCCATGCTTATTC]
[+] EMBL CD155432 [AAAACTCTTTGGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAG ]
[+] EMBL CD192035 [ tgatgtattGACTTGTTGTTGGTGTATTTGGTGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAAAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTGTGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAG ]
[+] EMBL CD117812 [ GTATTTGGCGAAGTGGTGTGGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAAAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATATTGAACCTATATTTTGTGCTATTCGTCAGT ]
[+] EMBL CD184595 [ GGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAACAGTAAAAGGACTAGACAAACATGAGATTGGTGACTAT ]
[+] EMBL CD155141 [ GTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTATAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGGTCAGTGCCATGCTTATTC]
[+] EMBL CD155290 [ AACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTGAGTCGTCGTCAGCTAGGCGTACTTGTGATGTCG ]
[+] EMBL CD118154 [ CGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATAT ]
[+] EMBL CD118102 [ CGCCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTANAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGATATATTGAACCTATATTTTGTGCTATTCCTCAGTCGTCCTCATCA ]
[+] EMBL CD118150 [ CGTCGATATGTGGAGATGCAATCGATGGAATGGATCTGGCGATTTGTTGACCAGTTAAAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATT ]
[-] EMBL CD120019 [ TGTTGACGAGTTAGAATCGATGTAAATGAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGG ]
[+] EMBL CD155479 [ GAA T CGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGAC ]
[+] EMBL CD113340 [ cagTGATATGTGGAGTTGCAGTATATTGTATGTGTGTCTTGATGGGTATGGCGGACAGGAGATAGTGAACCTATATTTTGCGCTATTCGTCAGTCGTCGTCAG ]
[+] EMBL CD155323 [ ATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAGCAGTAAAAGGACTAGAGAAA ]
[+] EMBL CD118044 [ TGTGTATTGATGGGTATGGTGGACAGGAAATACTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAG ]
[+] EMBL CD118135 [ GAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAAGGCGTACTTGTGATGTCGAGAGAAGTGGAGCTTGTTGGTGGACTC GATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGATGACTATTCGTGAGTGAGTGGTGGGTCA ]
[+] EMBL CD063916 [ gtGAGAGAAGTGGAGC TGTTGGTGGACTCAGATATAACTGGAT AGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTG ]
consensusID : consensus_10853#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 284 fasta sequence
[TGACAACGACGCCTTGAATTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATATTGTGCT]
[+] EMBL CD155361 [TGACAACGACGCCTTGAATTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGCGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCAATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGGTGTAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGGTGGACAGGAGATAGTGAACCTATATATTGTGCT]
[+] EMBL CD155443 [TGACAACGTCGCCTTGAATTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGATATGGTGGACAGGAGATcg ]
[+] EMBL CD155380 [TGACAACGACGCCTTGAATTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGTGTATTTGGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTc ]
[+] EMBL CD155509 [ GAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTCGTTGACGAGTTAGAATCGATGTAAATGAAg ]
consensusID : consensus_10853#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence
[AAACAGTTGCAGCCACCGATTCTCTGCGAACCCATTCGGCTCCAGGAGTAAATCCCTTCACCTAATAGAGGCACACCTTCTTCCGAAGTTACGGTGTCCATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAAGCG]
[+] EMBL CD087772 [AAACAGTTGCAGCCACCGATTCTCTGCGAACCCATTCGGCTCCAGGAGTAAATCCCTTCACCTAATAGAGGCACACCTTCTTCCGAAGTTACGGTGTCCATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAAGCG]
consensusID : consensus_10853#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 89 fasta sequence
[AGAAGTGGAGCTTGTTGGTGGACTCGATATAACTGGATAAGCAGTAAAAGGACTANACAAACATGACATTAGAATCTTTCGTGAGTGAG]
[+] EMBL CD190864 [AGAAGTGGAGCTTGTTGGTGGACTCGATATAACTGGATAAGCAGTAAAAGGACTANACAAACATGACATTAGAATCTTTCGTGAGTGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10853#1 ------------------------------------------------------------
consensus_10853#4 ------------------------------------------------------------
consensus_10853#2 ------------------------------------------------------------
consensus_10853#3 ------------------------------------------------------------
consensus_10853#0 TCCCACTTCGTTTCCCACTTAGCCAATATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTT 60
consensus_10853#1 -----------------------------AAAACTCTTTGGACTTGTTGTTGGTGTATTT 31
consensus_10853#4 ------------------------------------------------------------
consensus_10853#2 ------------------------------------------------------------
consensus_10853#3 ------------------------------------------------------------
consensus_10853#0 CCCTCTTGTGTCCGGACGTTAGCACCCGGTGCACTGTCTCCCAAGCTGTACTCATCGGTA 120
consensus_10853#1 GGCGAAGTGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCGA 91
consensus_10853#4 ------------------------------------------------------------
consensus_10853#2 ------------------------------------------------------------
consensus_10853#3 ------------------------------------------------------------
consensus_10853#0 TTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGCTCTAC 180
consensus_10853#1 TATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATG 151
consensus_10853#4 ------------------------------------------------------------
consensus_10853#2 ------------------------------------------TGACAACGACGCCTTGAA 18
consensus_10853#3 ------------------------------------------------------------
consensus_10853#0 CCCCGACGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCTATCTCC 240
consensus_10853#1 TAAATGAATCGTTGATATGTGGAGTTGCAGTATATTGTATGTGTGTATTGATGGGTATGG 211
consensus_10853#4 ------------------------------------------------------------
consensus_10853#2 TTGCCATGCCACCCACGGGTCTTTTCATGTATTGACTTGTTGTTGGTGTATTTGGCGAAG 78
consensus_10853#3 ------------------------------------------------------------
consensus_10853#0 AGGTTAGCTCAGCCGGGTGTTGGATGTCCCGGTTCAAGCCTGTAGTCGTGCCTGGTAGGC 300
consensus_10853#1 TGGACAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAG-CAAGGCG 270
consensus_10853#4 ------------------------------------------------------------
consensus_10853#2 TGGTGTTGTGCGCTATAGTTAAGGATGTAAATGAAGAATGAGTGAACCGTCG-ATATGTG 137
consensus_10853#3 ------AAACAGTTGCAGCCACCGAT-TCTCTGCGAACCCATTCGGCTCCAG-GAGTAAA 52
consensus_10853#0 AAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGGCGGCTTGCCGCCGAAGTGAGTGAT 360
consensus_10853#1 TACTTGTGATGTCGAGAGAAGT----GGAGC--TTGTTGGTG-----GACTCGATATAAC 319
consensus_10853#4 ----------------AGAAGT----GGAGC--TTGTTGGTG-----GACTCGATATAAC 33
consensus_10853#2 GAGTTGCAATCGATGGAATGGTTTTGGTGAT--TTGTTGACGAGTTAGAATCGATGTAAA 195
consensus_10853#3 TCCCTTCACCTAATAGAGGCAC----ACCTT--CTTCCGAAGTTACGGTGTCCATTTGCC 106
consensus_10853#0 ACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGAC 420
* * * * * *
consensus_10853#1 TGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGG 379
consensus_10853#4 TGGATAAGCAGTAAAAGGACTANACAAACATGACATTAGAATCT-TTCGTGAGTGAG--- 89
consensus_10853#2 TGAATCGTTGATATGTGGAGTTGCAGTATATTGTAT--GTGTGTATTGATGGGTATGGTG 253
consensus_10853#3 GAGTTCCTTCTCCAGAGTTCTCTCAAAGCG------------------------------ 136
consensus_10853#0 ACTGGTGCGCGAGATGGGTATTCTAAGGCGCTTGAGAGAACTCTGGAGAAGGAACTCGGC 480
* *
consensus_10853#1 TGGGTCAGTGCCATGCTTATTC-------------------------------------- 401
consensus_10853#4 ------------------------------------------------------------
consensus_10853#2 GACAGGAGATAGTGAACCTATATATTGTGCT----------------------------- 284
consensus_10853#3 ------------------------------------------------------------
consensus_10853#0 AAATTGACACCGNTACTTCGGAAGAAGGTGTGCCTTTAGTAGGTGAACCCGTACAGGGGG 540
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||