These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 601 fasta sequence [GTAACAGAAAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTATGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGTGGCGCGGCAACCTTGACGCGCCTAAACAGTTTC] [+] EMBL CD074784 [GTAACAGAAAGCCTTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGGATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGT ] [+] EMBL CD071868 [ tCATTGTTACGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAGATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGG ] [+] EMBL CD088202 [ ATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGA ] [-] EMBL CD144783 [ ATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAG ] [+] EMBL CD130222 [ tgtgACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAAC ] [-] EMBL CD166396 [ CAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGCGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAAATGTCAGTTCCAACTAA ] [-] EMBL CD130337 [ TGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGTCAga ] [-] EMBL CD140671 [ AAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATT ] [+] EMBL BG931467 [ GGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAATTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTGCCAAGGTCAAATTCTCCGATTGTGCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCCGTCATGTATTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGA ] [+] EMBL CD142286 [ TGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [+] EMBL CD142332 [ TGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGACATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [+] EMBL CD142297 [ cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [+] EMBL CD142395 [ cTGGAATGTACTTCTTTTCTCTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAGACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [+] EMBL CD142371 [ cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [+] EMBL CD142447 [ cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [+] EMBL CD142403 [ cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [+] EMBL CD142407 [ cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [+] EMBL CD142299 [ TGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA ] [-] EMBL CD132505 [ ATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCA ] [+] EMBL CD072373 [ TGTTCGGCATACCACTTGTAAACGGGTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGATGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCGCCATTT ] [+] EMBL CD132290 [ GGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGTGGCGCGGCAACCTTGACGCGCCTAAACAGTTTC] consensusID : consensus_10854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [AAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGTAAGAAATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTANNNNNNNNNNNNNNNNNNNNNNNNNTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGTGGCGC] [-] EMBL CD080951 [AAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGTAAGAAATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTANNNNNNNNNNNNNNNNNNNNNNNNNTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGTGGCGC] consensusID : consensus_10854#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [GGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGCTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTACACTACATGACCGATGAAAATCCTGTGTCTAACCCAGAT] [-] EMBL BG931323 [GGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGCTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTACACTACATGACCGATGAAAATCCTGTGTCTAACCCAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10854#0 GTAACAGAAAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGG 60 consensus_10854#1 --------AAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGG 52 consensus_10854#2 ---------------------------------------------------------GGG 3 ** consensus_10854#0 GGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAA 120 consensus_10854#1 GGGTCAGTTTACAAGACTAATTTG------------------------------TAAGAA 82 consensus_10854#2 GGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAA 63 ************************ ****** consensus_10854#0 ATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGA 180 consensus_10854#1 ATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGA 142 consensus_10854#2 ATAAATGCTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGA 123 ******* ***** ********************************************** consensus_10854#0 CGAGTAGTTGAGTATGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGT 240 consensus_10854#1 CGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGT 202 consensus_10854#2 CGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGT 183 ************** ** ****************************************** consensus_10854#0 TCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTT-CATCGGTCATGTA 299 consensus_10854#1 TCGGCATACCACTTGTANNNNNNNNNNNNNNNNNNNNNNNNNTTT--CATCGGTCATGTA 260 consensus_10854#2 TCGGCATACCACTTGTAAACGGTTGGTGGGTTACACTACATGACCGATGAAAATCCTGT- 242 ***************** ** *** consensus_10854#0 GTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCT 359 consensus_10854#1 GTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCT 320 consensus_10854#2 GTCTAACCCA-GAT---------------------------------------------- 255 ** ***** * * consensus_10854#0 GTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTT 419 consensus_10854#1 GTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTAT-- 378 consensus_10854#2 ------------------------------------------------------------ consensus_10854#0 ATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAA 479 consensus_10854#1 -------------------------AATTTTCCCCATTTCAATTCATCAGTCCTGAATAA 413 consensus_10854#2 ------------------------------------------------------------ consensus_10854#0 AGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAA 539 consensus_10854#1 AGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAA 473 consensus_10854#2 ------------------------------------------------------------ consensus_10854#0 CTTCTCAATTAAGGACATCTCATTCAGGTGGCGCGGCAACCTTGACGCGCCTAAACAGTT 599 consensus_10854#1 CTTCTCAATTAAGGACATCTCATTCAGGTGGCGC-------------------------- 507 consensus_10854#2 ------------------------------------------------------------ consensus_10854#0 TC 601 consensus_10854#1 -- consensus_10854#2 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||