cluster # 10854

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Schistosoma mansoni
cluster # 10854 cluster # 10854 Sequences # 23 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10854#0 length = 601 sequences # 21

consensus_10854#1 length = 507 sequences # 1
consensus_10854#2 length = 255 sequences # 1

consensusID : consensus_10854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 21
consensus length = 601
fasta sequence

                              [GTAACAGAAAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTATGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGTGGCGCGGCAACCTTGACGCGCCTAAACAGTTTC]

[+] EMBL CD074784             [GTAACAGAAAGCCTTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGGATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGT                                 ]
[+] EMBL CD071868             [          tCATTGTTACGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAGATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD088202             [            ATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGA                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD144783             [            ATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAG                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD130222             [                     tgtgACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAAC                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD166396             [                                    CAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGCGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAAATGTCAGTTCCAACTAA                                                                                                                                                           ]
[-] EMBL CD130337             [                                              TGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGTCAga                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD140671             [                                                    AAGTTAGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATT                                                                                                                                                                                                        ]
[+] EMBL BG931467             [                                                           GGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAATTCGTAAGAAATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTGCCAAGGTCAAATTCTCCGATTGTGCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCCGTCATGTATTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGA                                                                                                                                                                                                                                                                          ]
[+] EMBL CD142286             [                                                                                                                                                                                                  TGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD142332             [                                                                                                                                                                                                  TGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGACATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD142297             [                                                                                                                                                                                                 cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD142395             [                                                                                                                                                                                                 cTGGAATGTACTTCTTTTCTCTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAGACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD142371             [                                                                                                                                                                                                 cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD142447             [                                                                                                                                                                                                 cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD142403             [                                                                                                                                                                                                 cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD142407             [                                                                                                                                                                                                 cTGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD142299             [                                                                                                                                                                                                  TGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAA                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD132505             [                                                                                                                                                                                                                                   ATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCA                                                                                                                                                  ]
[+] EMBL CD072373             [                                                                                                                                                                                                                                             TGTTCGGCATACCACTTGTAAACGGGTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGATGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCGCCATTT                                                                                                                                               ]
[+] EMBL CD132290             [                                                                                                                                                                                                                                                                    GGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGTGGCGCGGCAACCTTGACGCGCCTAAACAGTTTC]




>consensus_10854#0
GTAACAGAAAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGG
GGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAA
ATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGA
CGAGTAGTTGAGTATGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGT
TCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTTCATCGGTCATGTAG
TGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTG
TTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTTA
TTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAA
GTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAAC
TTCTCAATTAAGGACATCTCATTCAGGTGGCGCGGCAACCTTGACGCGCCTAAACAGTTT
C

consensusID : consensus_10854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [AAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGTAAGAAATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTANNNNNNNNNNNNNNNNNNNNNNNNNTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGTGGCGC]

[-] EMBL CD080951             [AAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGTTTACAAGACTAATTTGTAAGAAATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTANNNNNNNNNNNNNNNNNNNNNNNNNTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCAATTAAGGACATCTCATTCAGGTGGCGC]




>consensus_10854#1
AAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGGGGGTCAGT
TTACAAGACTAATTTGTAAGAAATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGG
TTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTC
CAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTANNNNNNNNNNNNNNNNNNNNN
NNNNTTTCATCGGTCATGTAGTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCC
TCATAATCCCAGCCAAACCTGTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAA
TTATTATTTTCATAGTATAATTTTCCCCATTTCAATTCATCAGTCCTGAATAAAGTCAAA
AATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAACTTCTCA
ATTAAGGACATCTCATTCAGGTGGCGC

consensusID : consensus_10854#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [GGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGCTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTACACTACATGACCGATGAAAATCCTGTGTCTAACCCAGAT]

[-] EMBL BG931323             [GGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAAATAAATGCTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTACACTACATGACCGATGAAAATCCTGTGTCTAACCCAGAT]




>consensus_10854#2
GGGGGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAA
GAAATAAATGCTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTT
GGACGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAG
TGTTCGGCATACCACTTGTAAACGGTTGGTGGGTTACACTACATGACCGATGAAAATCCT
GTGTCTAACCCAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10854#0      GTAACAGAAAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGG 60
consensus_10854#1      --------AAGCATTGTTAAGAGCAACTAAAATTCACAAGAATAACTGACTAAAGTTAGG 52
consensus_10854#2      ---------------------------------------------------------GGG 3
                                                                                 **

consensus_10854#0      GGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAA 120
consensus_10854#1      GGGTCAGTTTACAAGACTAATTTG------------------------------TAAGAA 82
consensus_10854#2      GGGTCAGTTTACAAGACTAATTTGAAGAGGGGCAACTCCAAACGTTGAAACTCGTAAGAA 63
                       ************************                              ******

consensus_10854#0      ATAAATGGTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGA 180
consensus_10854#1      ATAAATGGTTTGGGTGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGA 142
consensus_10854#2      ATAAATGCTTTGGATGACGAATTGAATTACTTCGGTGGTTCCCAAGGTTCAATTTTTGGA 123
                       ******* ***** **********************************************

consensus_10854#0      CGAGTAGTTGAGTATGGAATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGT 240
consensus_10854#1      CGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGT 202
consensus_10854#2      CGAGTAGTTGAGTAAGGTATGTACTTCTTTTCTTTTTCCAAGGTCAAATTTTCCGAGTGT 183
                       ************** ** ******************************************

consensus_10854#0      TCGGCATACCACTTGTAAACGGTTGGTGGGTTAGACACAGGATTTT-CATCGGTCATGTA 299
consensus_10854#1      TCGGCATACCACTTGTANNNNNNNNNNNNNNNNNNNNNNNNNTTT--CATCGGTCATGTA 260
consensus_10854#2      TCGGCATACCACTTGTAAACGGTTGGTGGGTTACACTACATGACCGATGAAAATCCTGT- 242
                       *****************                                    ** *** 

consensus_10854#0      GTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCT 359
consensus_10854#1      GTGTAACCAGCGGTGCCATTCCGGTGGGACTTGAGATCCCTCATAATCCCAGCCAAACCT 320
consensus_10854#2      GTCTAACCCA-GAT---------------------------------------------- 255
                       ** *****   * *                                              

consensus_10854#0      GTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTATTT 419
consensus_10854#1      GTTCGAATATATAACCCAACGATTTCTCCCAACGAAGTAATTATTATTTTCATAGTAT-- 378
consensus_10854#2      ------------------------------------------------------------
                                                                                   

consensus_10854#0      ATTTCCGAAATTGTCAGTTCCAACTAATTTTCCCCATTTCAATTCATCAGTCCTGAATAA 479
consensus_10854#1      -------------------------AATTTTCCCCATTTCAATTCATCAGTCCTGAATAA 413
consensus_10854#2      ------------------------------------------------------------
                                                                                   

consensus_10854#0      AGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAA 539
consensus_10854#1      AGTCAAAAATGACCCTTTAATCCCACCGTTTTGACGTATTATTAGCCTTAAGGTGTTCAA 473
consensus_10854#2      ------------------------------------------------------------
                                                                                   

consensus_10854#0      CTTCTCAATTAAGGACATCTCATTCAGGTGGCGCGGCAACCTTGACGCGCCTAAACAGTT 599
consensus_10854#1      CTTCTCAATTAAGGACATCTCATTCAGGTGGCGC-------------------------- 507
consensus_10854#2      ------------------------------------------------------------
                                                                                   

consensus_10854#0      TC 601
consensus_10854#1      --
consensus_10854#2      --