These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1876 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTACTGTAGCCAGCTAGTTCTAAGTTTATTAGGATGTGCACTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGTTCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTGAATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAA-CGCTGGACAA-ATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTATATTGGTATGTCTCCAGGCTGCAATGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTAAGTTTTGAGGTAGTGTTTGAACTCTGAAACATTCTAAATGATAGTTTGAGTTTCCTGAGACGACTCGACGTGCTTCTTGACATCCAGCATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGTTTGTACCAGTATACATTATCACGCCTCCGAAGAACTTCTCATTGGATATAGGTGTGATGCCTNTATGGACGCAAATTTATATATTGGAGGTCAATTTATTATCAAGTCAAACACTTGCGNCATCCTGATTGAAAATCATTATATTATTAGCAGTTTTTGTGATT] [+] EMBL AI395226 [TTTTTTTTTTTTTTTTTTTTTTACTGTAGCCAGCTAGTTCTAAGTTTATTAGGATGTGCACTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGTTCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTGAATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAA CGCTGGACAA ATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTCCCCGATTTAAAGCCAAAGAGCTG TTTGGGTTGTGTACATCTGGt ] [+] EMBL CD077196 [ AGCTAGTTCTAAGTTTATTAGGATGTGCACTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGTTCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTGAATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAA CGCTGGACAA ATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTCCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTACATTGGTATGTCTCCAGGCTGCAATGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTA ] [+] EMBL CD076915 [ AAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTGAGTGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAACCGCTGGACAATATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCC ] [+] EMBL CD179168 [ CATGTTATAAGTAAATAA CGCTGGACAA ATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTATATTGGTATGTCTCCAGGCTGCAATGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGAT ] [+] EMBL CD188308 [ AGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCCGTTAGCGTAGACGTATATTGGTATGTCTCCAGGCTGCAATGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTAAGTTTTGAGGTAGTGTTTGAACTCTGAAACATTCTAAATGATAGTTTGAGTTTCCTGAGACGACTCGACGTGCTTCTTGACATCCAGCATCTGGTACGATCGGCCTTCCACATGATGCATATCTTGGTGCATAGCGTTTATGAAA ] [-] EMBL AW017418 [ CCAGCATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGA ] [+] EMBL CD165432 [ CATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTG ] [+] EMBL CD165404 [ CATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCACAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAGGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTGCACATACTAGAAGCTGTTTCAGTGGGAGAGTTTGTTG ] [-] EMBL CD165526 [ ATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCGGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGACTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGA ] [+] EMBL CD190543 [ TCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCATGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAG ] [+] EMBL CD200699 [ CGCCTGAGATTGTGATAGTAAGCACCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGGCGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCGCCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAAT ] [+] EMBL CD131201 [ CATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCC ] [-] EMBL CD201324 [ GCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACG ] [-] EMBL CD157296 [ CACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACCACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGT ] [+] EMBL CD095296 [ TCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGT ] [+] EMBL CD181673 [ AGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGGATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAn ] [-] EMBL CD183702 [ ATCACTGTTGCCGATGGANTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAGCTGGTATTACAATCGACTGACCAATAGTG ] [+] EMBL CD189712 [ CAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATATAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGTTTGTACCAGTATACATTATCACGCCTCCGAAGAACTTCTCATTGGATATAGGTGTGATGCCTNTATGGACGCAAATTTATATATTGGAGGTCAATTTATTATCAAGTCAAACACTTGCGNCATCCTGATTGAAAATCATTATATTATTAGCAGTTTTTGTGATT] [+] EMBL CD188803 [ TAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATGTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTGGGGGTGTTATCTAGATTTTCAGAAGAATGACAAGCCATAGTGTATGACCTTGATGAAATGGATCCTTTAGAGGC CCTAAATG ACAACTGGTATTACAATCGACTGCCCAATAGTGgc ] consensusID : consensus_10870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 549 fasta sequence [AATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATAAAGAGATATGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCACTCTGTGTTCCTGGCATCCTCGGTCCCGCCCGCTCATTAAAAACACTGTCCAATCTGTAC] [-] EMBL CD188907 [AATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATAAAGAGATATGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTACTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCACTCTGTGTTCCTGGCATCCTCGGTCCCGCCCGCTCATTAAAAACACTGTCCAATCTGTAC] [-] EMBL CD068533 [ CAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCACTTTGTAGAGCATTTGGTGTGTTATCTAGATGTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCACTCTGTGTTCCTGGCATCCTCG ] [+] EMBL CD165161 [ ATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCAC ] consensusID : consensus_10870#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [GTAAGCATCTGCCTTCAGTGCAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTGGACAAAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAAGAAGCCGTTGCCAGTAATCGAATTCCCGCGGCGACTGGCGGCGG] [-] EMBL CD165473 [GTAAGCATCTGCCTTCAGTGCAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTGGACAAAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAAGAAGCCGTTGCCAGTAATCGAATTCCCGCGGCGACTGGCGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10870#0 TTTTTTTTTTTTTTTTTTTTTTACTGTAGCCAGCTAGTTCTAAGTTTATTAGGATGTGCA 60 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 CTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGT 120 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 TCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTG 180 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 AATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAACGCTGGACAAATTCACGTATG 240 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 TAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACA 300 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 TTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATA 360 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 ACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATA 420 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 TAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTATATTGGTATGTCTCCAGGCTGCAA 480 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 TGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTAAGTTT 540 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 TGAGGTAGTGTTTGAACTCTGAAACATTCTAAATGATAGTTTGAGTTTCCTGAGACGACT 600 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 CGACGTGCTTCTTGACATCCAGCATCTGGTACGATCGGCCTTCCACATGATGCACATCTT 660 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 GGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTA 720 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 AAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAG 780 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 GGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCT 840 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------AATGTCCCACCAGCTCCAGCTGAA 24 consensus_10870#0 TCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAA 900 consensus_10870#2 --------------------------------------------------------GTAA 4 consensus_10870#1 GATACAGACGACCGAGTTTCCATACTTTGCATAAAGAGATATGTTAAAGCATCAACTTCA 84 * * consensus_10870#0 GCATCTGACTTC---AGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGT 957 consensus_10870#2 GCATCTGCCTTC---AGTGCAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGT 61 consensus_10870#1 GCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGG 144 ** ** * * **** * *** **** ** * * * ** *** consensus_10870#0 TTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTT--TGTCG--AATTTATACTGCC 1013 consensus_10870#2 TTTGGACAAAAAGCGCCTGTTAGAGTCACAACATTGTT--TGTCG--AATTTATACTGCC 117 consensus_10870#1 ACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGC- 203 * * *** ** * * * * ** * *** ** ** consensus_10870#0 ACTAAGTGTGGTACCT-----TCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATG 1068 consensus_10870#2 ACTAAGTGTGGTACCT-----TCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATG 172 consensus_10870#1 ATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAG-AAGCCATAGTGTATGAACTTGATG 262 * * ***** ** ** * * ** * * *** *** * * *** *** consensus_10870#0 TTCTGA----CCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACAT 1124 consensus_10870#2 TTCTGA----CCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACAT 228 consensus_10870#1 AAATGGATCCTCTAGAGGCACCTAAATGAACA-ACTGGTATTACAATC-GACTGACCAAT 320 ** * * ** * * * * ******* ** * * ** * ** ** consensus_10870#0 ACTAG--AAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAA 1182 consensus_10870#2 ACTAG--AAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCA-----------AGAA 275 consensus_10870#1 AGTGCTTGAGCTACTCCCCTGCGATGATC-GCCCAAGAGACCCGGGTT--TGTACCAGTA 377 * * **** * * ** ** * * * *** ** ** * consensus_10870#0 GTGATCACTGTTGC--CGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGG 1240 consensus_10870#2 GCCGTTGCCA--GT--AATCGAATTCCCGCGGCGACTGGCGGCGG--------------- 316 consensus_10870#1 TACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTG 437 * * * consensus_10870#0 AACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCC 1300 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 TGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCACTCTGTGT 497 consensus_10870#0 GTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAG 1360 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 TCCTGGCATCCTCGGTCCCGCCCGCTCATTAAAAACACTGTCCAATCTGTAC-------- 549 consensus_10870#0 CTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAG 1420 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 CATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTAC 1480 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 CAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAG 1540 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 TTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATG 1600 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 AACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACT 1660 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 GACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGTTTGTACCA 1720 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 GTATACATTATCACGCCTCCGAAGAACTTCTCATTGGATATAGGTGTGATGCCTNTATGG 1780 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 ACGCAAATTTATATATTGGAGGTCAATTTATTATCAAGTCAAACACTTGCGNCATCCTGA 1840 consensus_10870#2 ------------------------------------------------------------ consensus_10870#1 ------------------------------------------------------------ consensus_10870#0 TTGAAAATCATTATATTATTAGCAGTTTTTGTGATT 1876 consensus_10870#2 ------------------------------------ consensus_10870#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||