cluster # 10870

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Schistosoma mansoni
cluster # 10870 cluster # 10870 Sequences # 23 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10870#0 length = 1876 sequences # 19

consensus_10870#1 length = 549 sequences # 3
consensus_10870#2 length = 316 sequences # 1

consensusID : consensus_10870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 19
consensus length = 1876
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTACTGTAGCCAGCTAGTTCTAAGTTTATTAGGATGTGCACTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGTTCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTGAATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAA-CGCTGGACAA-ATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTATATTGGTATGTCTCCAGGCTGCAATGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTAAGTTTTGAGGTAGTGTTTGAACTCTGAAACATTCTAAATGATAGTTTGAGTTTCCTGAGACGACTCGACGTGCTTCTTGACATCCAGCATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGTTTGTACCAGTATACATTATCACGCCTCCGAAGAACTTCTCATTGGATATAGGTGTGATGCCTNTATGGACGCAAATTTATATATTGGAGGTCAATTTATTATCAAGTCAAACACTTGCGNCATCCTGATTGAAAATCATTATATTATTAGCAGTTTTTGTGATT]

[+] EMBL AI395226             [TTTTTTTTTTTTTTTTTTTTTTACTGTAGCCAGCTAGTTCTAAGTTTATTAGGATGTGCACTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGTTCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTGAATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAA CGCTGGACAA ATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTCCCCGATTTAAAGCCAAAGAGCTG TTTGGGTTGTGTACATCTGGt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD077196             [                               AGCTAGTTCTAAGTTTATTAGGATGTGCACTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGTTCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTGAATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAA CGCTGGACAA ATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTCCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTACATTGGTATGTCTCCAGGCTGCAATGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD076915             [                                                                                                                                  AAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTGAGTGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAACCGCTGGACAATATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD179168             [                                                                                                                                                                                                         CATGTTATAAGTAAATAA CGCTGGACAA ATTCACGTATGTAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTATATTGGTATGTCTCCAGGCTGCAATGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD188308             [                                                                                                                                                                                                                                                                         AGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACATTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATAACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATATAAAGGTGCTAGGAAAGCTCCGTTAGCGTAGACGTATATTGGTATGTCTCCAGGCTGCAATGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTAAGTTTTGAGGTAGTGTTTGAACTCTGAAACATTCTAAATGATAGTTTGAGTTTCCTGAGACGACTCGACGTGCTTCTTGACATCCAGCATCTGGTACGATCGGCCTTCCACATGATGCATATCTTGGTGCATAGCGTTTATGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AW017418             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCAGCATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD165432             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD165404             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCACAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAGGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTGCACATACTAGAAGCTGTTTCAGTGGGAGAGTTTGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD165526             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCTGGTACGATCGGCCTTCCACATGATGCACATCTTGGTGCATAGCGTTTATGAAAATCGGTTAGACAGTGTAGTCGACCATGAACATCAATGGTAAAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGACTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD190543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAGGGCATCCCAAGCGCATGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCTTCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAAGCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD200699             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGCCTGAGATTGTGATAGTAAGCACCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGGCGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCGCCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD131201             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD201324             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD157296             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACCACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGT                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD095296             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGT                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD181673             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGGATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAn                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD183702             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCACTGTTGCCGATGGANTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAGCTGGTATTACAATCGACTGACCAATAGTG                                                                                                                                                                                                             ]
[+] EMBL CD189712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATATAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGTTTGTACCAGTATACATTATCACGCCTCCGAAGAACTTCTCATTGGATATAGGTGTGATGCCTNTATGGACGCAAATTTATATATTGGAGGTCAATTTATTATCAAGTCAAACACTTGCGNCATCCTGATTGAAAATCATTATATTATTAGCAGTTTTTGTGATT]
[+] EMBL CD188803             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATGTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTGGGGGTGTTATCTAGATTTTCAGAAGAATGACAAGCCATAGTGTATGACCTTGATGAAATGGATCCTTTAGAGGC CCTAAATG ACAACTGGTATTACAATCGACTGCCCAATAGTGgc                                                                                                                                                                                                           ]




>consensus_10870#0
TTTTTTTTTTTTTTTTTTTTTTACTGTAGCCAGCTAGTTCTAAGTTTATTAGGATGTGCA
CTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGT
TCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTG
AATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAACGCTGGACAAATTCACGTATG
TAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACA
TTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATA
ACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATA
TAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTATATTGGTATGTCTCCAGGCTGCAA
TGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTAAGTTT
TGAGGTAGTGTTTGAACTCTGAAACATTCTAAATGATAGTTTGAGTTTCCTGAGACGACT
CGACGTGCTTCTTGACATCCAGCATCTGGTACGATCGGCCTTCCACATGATGCACATCTT
GGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTA
AAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAG
GGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCT
TCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAA
GCATCTGACTTCAGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTT
ACACCTAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGT
GTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAA
GTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCA
GTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAAGTGATCACTGTTGCCGAT
GGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGGAACTCAGGCCTGAGTGCTGT
TGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCCGTAAACTCCCAGCTGGAGAA
GAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAGCTCCAGCTGAAGATACAGAC
GACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAGCATCAACTTCAGCTTCAGGA
TCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAA
GTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTG
TTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCT
CTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTA
CTCCCCTGCGATGATCGCCCAAGAGACCCGGTTTGTACCAGTATACATTATCACGCCTCC
GAAGAACTTCTCATTGGATATAGGTGTGATGCCTNTATGGACGCAAATTTATATATTGGA
GGTCAATTTATTATCAAGTCAAACACTTGCGNCATCCTGATTGAAAATCATTATATTATT
AGCAGTTTTTGTGATT

consensusID : consensus_10870#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 549
fasta sequence

                              [AATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATAAAGAGATATGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCACTCTGTGTTCCTGGCATCCTCGGTCCCGCCCGCTCATTAAAAACACTGTCCAATCTGTAC]

[-] EMBL CD188907             [AATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATAAAGAGATATGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTACTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCACTCTGTGTTCCTGGCATCCTCGGTCCCGCCCGCTCATTAAAAACACTGTCCAATCTGTAC]
[-] EMBL CD068533             [                                                                                                                                        CAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCACTTTGTAGAGCATTTGGTGTGTTATCTAGATGTTCAGAAGAATGAGAAGCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCACTCTGTGTTCCTGGCATCCTCG                                      ]
[+] EMBL CD165161             [                                                                                                                                                                                                                                                                        ATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCAC                                                           ]




>consensus_10870#1
AATGTCCCACCAGCTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATAAAG
AGATATGTTAAAGCATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTT
ATTGGCCGATTACCAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTT
TCACCGTTATCAGTTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAA
GCCATAGTGTATGAACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGT
ATTACAATCGACTGACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGAC
CCGGGTTTGTACCAGTATACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGT
GATGCTTGAGCATAGTGTGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATAT
CGTCGTTCACTCTGTGTTCCTGGCATCCTCGGTCCCGCCCGCTCATTAAAAACACTGTCC
AATCTGTAC

consensusID : consensus_10870#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [GTAAGCATCTGCCTTCAGTGCAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTGGACAAAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAAGAAGCCGTTGCCAGTAATCGAATTCCCGCGGCGACTGGCGGCGG]

[-] EMBL CD165473             [GTAAGCATCTGCCTTCAGTGCAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGTTTTGGACAAAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACTAAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAAGAAGCCGTTGCCAGTAATCGAATTCCCGCGGCGACTGGCGGCGG]




>consensus_10870#2
GTAAGCATCTGCCTTCAGTGCAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAG
TTTTGGACAAAAAGCGCCTGTTAGAGTCACAACATTGTTTGTCGAATTTATACTGCCACT
AAGTGTGGTACCTTCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATGTTCTGACC
AAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACATACTAGAAGCTGA
TTCAGTGGGAGAGTTTGTTGATGAGCTCCCAAGAAGCCGTTGCCAGTAATCGAATTCCCG
CGGCGACTGGCGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10870#0      TTTTTTTTTTTTTTTTTTTTTTACTGTAGCCAGCTAGTTCTAAGTTTATTAGGATGTGCA 60
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      CTTGTTAATGCTTCCAAAAATTGATAAAAAATTCATTTAAAATCAAAACAAGCGTACAGT 120
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      TCACATTAGGAAAAGTTGTCAATGTTTAGTTTGACTATAATTTCAAAGAGAAGTGTACTG 180
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      AATGAAGAAAGGAAGTTAGTACATGTTATAAGTAAATAACGCTGGACAAATTCACGTATG 240
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      TAAAAGTGCCTTGGAAATACAGTAGCCAAAGTAAAGAACCAAGTCTGTATAGCTCTTACA 300
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      TTATGCGAGAAAAACCATCCAAGATAATGTTTAATTTGTATAACACGGACAAATTTGATA 360
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      ACGTTCCCGATTTAAAGCCAAAGAGCTGTTTTGGGTTGTGTACATCTGGATCTCAGAATA 420
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      TAAAGGTGCTAGGAAAGCTCCGTTAGCGCAGACGTATATTGGTATGTCTCCAGGCTGCAA 480
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      TGTCACTAACTGGCAATACTACCACTAACTTTAAACGCAGGTGACTTGAGATTTAAGTTT 540
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      TGAGGTAGTGTTTGAACTCTGAAACATTCTAAATGATAGTTTGAGTTTCCTGAGACGACT 600
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      CGACGTGCTTCTTGACATCCAGCATCTGGTACGATCGGCCTTCCACATGATGCACATCTT 660
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      GGTGCATAGCGTTTATGAAAATCTGTTAGACAGTGTAGTCGACCATGAACATCAATGGTA 720
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      AAAGGTCGGGAATCTAGTCTACCTGCGCATACTACACAGACGAAGCAGTTAGGATGATAG 780
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      GGCATCCCAAGCGCGTGAACTACTCTGTCACCTATGGGTCTATGACAATTTGAACATGCT 840
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------AATGTCCCACCAGCTCCAGCTGAA 24
                                                                                   

consensus_10870#0      TCTACAGCCCCGTCACGTACACAAGCTGGGCATAACAAACGCCTGAGATTGTGATAGTAA 900
consensus_10870#2      --------------------------------------------------------GTAA 4
consensus_10870#1      GATACAGACGACCGAGTTTCCATACTTTGCATAAAGAGATATGTTAAAGCATCAACTTCA 84
                                                                                * *

consensus_10870#0      GCATCTGACTTC---AGTGGAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGT 957
consensus_10870#2      GCATCTGCCTTC---AGTGCAGCAGCGCAACGATAGCATGTAAAACAAGCCACATGAAGT 61
consensus_10870#1      GCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTACCAGCAGTAAGG 144
                       ** ** *  *     ****  *  ***   ****    **    *  * *  **  *** 

consensus_10870#0      TTTACACCTAAAGCGCCTGTTAGAGTCACAACATTGTT--TGTCG--AATTTATACTGCC 1013
consensus_10870#2      TTTGGACAAAAAGCGCCTGTTAGAGTCACAACATTGTT--TGTCG--AATTTATACTGCC 117
consensus_10870#1      ACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAGTTTGTAGAGC- 203
                         *           *  ***   **    *  * * *    **    * *** **  ** 

consensus_10870#0      ACTAAGTGTGGTACCT-----TCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATG 1068
consensus_10870#2      ACTAAGTGTGGTACCT-----TCCGGAGGGAAGAGTGAGCGACGACATCGGAAACATATG 172
consensus_10870#1      ATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAG-AAGCCATAGTGTATGAACTTGATG 262
                       * *  ***** ** **     * * ** * * ***  *** *     *  ***    ***

consensus_10870#0      TTCTGA----CCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACAT 1124
consensus_10870#2      TTCTGA----CCAAAAGTTGCATTGGTCACTGCACTGGTAGTATCACCAGAATTACACAT 228
consensus_10870#1      AAATGGATCCTCTAGAGGCACCTAAATGAACA-ACTGGTATTACAATC-GACTGACCAAT 320
                          **      * * **   * *   * *    ******* **  * * ** * **  **

consensus_10870#0      ACTAG--AAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCAGTTGTTGAAGTAGAA 1182
consensus_10870#2      ACTAG--AAGCTGATTCAGTGGGAGAGTTTGTTGATGAGCTCCCA-----------AGAA 275
consensus_10870#1      AGTGCTTGAGCTACTCCCCTGCGATGATC-GCCCAAGAGACCCGGGTT--TGTACCAGTA 377
                       * *     ****  * *  ** **   *  *   * ***  **             ** *

consensus_10870#0      GTGATCACTGTTGC--CGATGGACTACCTCGACCACCATTCACAGTTCCTCCAGCACCGG 1240
consensus_10870#2      GCCGTTGCCA--GT--AATCGAATTCCCGCGGCGACTGGCGGCGG--------------- 316
consensus_10870#1      TACATTATCACGCTCCGAAGAACTTCTCATTGGATATAGTTGTGATGCTTGAGCATAGTG 437
                           *                   *  *                                

consensus_10870#0      AACTCAGGCCTGAGTGCTGTTGCAAACGTCCAAACTGAGAATTGAGACCACTCCCACGCC 1300
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      TGGAGCATCTATTGATGAAATAGGAACAACAGGGTGACGATATCGTCGTTCACTCTGTGT 497
                                                                                   

consensus_10870#0      GTAAACTCCCAGCTGGAGAAGAATTGACTCCGTCTGGCCCGGAAGTTAATGTCCCACCAG 1360
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      TCCTGGCATCCTCGGTCCCGCCCGCTCATTAAAAACACTGTCCAATCTGTAC-------- 549
                                                                                   

consensus_10870#0      CTCCAGCTGAAGATACAGACGACCGAGTTTCCATACTTTGCATTAAGAGATTTGTTAAAG 1420
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      CATCAACTTCAGCTTCAGGATCTGAAAGTGGTGGTGCGGGTCGATTTATTGGCCGATTAC 1480
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      CAGCAGTAAGGACTGATGAAGTTCTGAATGTAGAAGATTTAGTACTTTCACCGTTATCAG 1540
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      TTTGTAGAGCATTTGGTGTGTTATCTAGATTTTCAGAAGAATGAGAAGCCATAGTGTATG 1600
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      AACTTGATGAAATGGATCCTCTAGAGGCACCTAAATGAACAACTGGTATTACAATCGACT 1660
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      GACCAATAGTGCTTGAGCTACTCCCCTGCGATGATCGCCCAAGAGACCCGGTTTGTACCA 1720
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      GTATACATTATCACGCCTCCGAAGAACTTCTCATTGGATATAGGTGTGATGCCTNTATGG 1780
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      ACGCAAATTTATATATTGGAGGTCAATTTATTATCAAGTCAAACACTTGCGNCATCCTGA 1840
consensus_10870#2      ------------------------------------------------------------
consensus_10870#1      ------------------------------------------------------------
                                                                                   

consensus_10870#0      TTGAAAATCATTATATTATTAGCAGTTTTTGTGATT 1876
consensus_10870#2      ------------------------------------
consensus_10870#1      ------------------------------------