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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1872 fasta sequence
[TGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATATTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTCAATGAAATGTTTAGAGTTGATTTTTTATCAGATGTGAGAAATATACGTGTGAATGCTCCAGAACAAATAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCATGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGAGTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAACA-TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGA-GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAG-CTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTCGAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTTTCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGTTTGCGTTGGCCCTAGTTGTCCTCTTGCTTCTTCACGTGGTACAATATCAATAAGAAAATCAAATTGATCTGTATCTCCATCACTGACTGCCATTGCAATATCATTTCTTTGAAGAGTACGCCGGCGGTTACGTTCTGTATGAATCCATGCTCTCAACGTTAGTTCTCGTATGAAAAGCTCAGCAGCTTTTGCGAACAATATGGGTGCCTCAGCGCTTATCATCATACATTTGATATCATCATCCAACTTCATAATCTTTTTAATACTAACCACAGCTATGTCCTGGCTGTTGAAAGAAGCAGGTTGACACATTCATGCCTCTATTTAAACACGTATAAGATCCCAGAACGATTACATTTGAGACTGACAATCTGTCAGTGGATCACTTGAGTAATCCATT]
[+] EMBL CD191889 [TGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATATTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTCAATGAAATGTTTAGAGTTGATTTTTTATCAGATGTGAGAAATATACGTGTGAATGCTCCAGAACAAATAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCATGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGAGTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAAT ]
[+] EMBL CD154389 [ GAAATGTTTAGAGTTGATTTTTTATCAGATGTGAGAAATATACGTGTGAATGCTCCAGAACAAATAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCATGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGAGTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACT ]
[+] EMBL CD154674 [ GAAATGTTTAGAGTTGATTTTTTATCAGATGTGAGAAATATACGTGTGAATGCTCCAGAACAAATAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCATGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGAGTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACT ]
[+] EMBL CD197166 [ GAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAGTAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAAATATGGAGAGCAGTATACAACA TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATCTGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATT ]
[-] EMBL CD140405 [ CAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAACA TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATACATGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACT ]
[-] EMBL CD196713 [ TTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAACATTTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACT ]
[+] EMBL CD144842 [ ACAAAGAGGAAAGTGGGAAGATACAGAGAACTGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAGTCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAATA TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGAGGATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCGTCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAGGGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGT ]
[-] EMBL CD153616 [ TGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAACA TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGA ]
[-] EMBL CD152719 [ GTATGACTAATGTATCAGGCATACAAACAACCAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTAAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAGGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTCCAGCTG ]
[-] EMBL CD186324 [ ACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCGTCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAGTCTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATG ]
[+] EMBL CD112997 [ GCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTGGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAG CTGAAGACTAGGCGATAGCTAGACCACTTCCGGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGC ]
[-] EMBL CD185055 [ ACACCAGCAGTGAATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAG CTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG ]
[+] EMBL CD185078 [ AGTTCGACTGCCACCAGCCTCTTGAGTGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAG CTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTTACAGATG ]
[+] EMBL CD111250 [ TTGGACTAATGTTTGACGTGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTCGAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTTTCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGTTTGCGTTGGCCCTAGTTG ]
[+] EMBL CD110952 [ TTGGACTAATGTTTGACATGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTCGAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTTTCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGT ]
[+] EMBL CD111096 [ TTGGACTAATGTTTGGCATGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTCGAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTTTCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGT ]
[-] EMBL CD118161 [ TTTGTGGTTGGGTAGAAGATCGTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTC ]
[+] EMBL CD124608 [ GTTGAATTCCCATTAGCATTTGAAGCTGATGTTGTTTGCGTTGGCCGACGATGTCCTCTTGCTTCTTCACGTGGTACAATATCAATAAGAAAATCAAATTGATCTGTATCTCCATCACTGACTGCCATTGCAATATCATTTCTTTGAAGAGTACGCCGGCGGTTACGTTCTGTATGAATCCATGCTCTCAACGTTAGTTCTCGTATGAAAAGCTCAGCAGCTTTTGCGAACAATATGGGTGCCTCAGCGCTTATCATCATACATTTGATATCATCATCCAACTTCATAATCTTTTTAATACTAACCACAGCTATGTCCTGGCTGTTGAAAGAAGCAGGTTGACACATTCATGCCTCTATTTAAACACGTATAAGATCCCAGAACGATTACATTTGAGACTGACAATCTGTCAGTGGATCACTTGAGTAATCCATT]
consensusID : consensus_10872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1224 fasta sequence
[ACCAAACAAGATATTTTGGAGTAAACCTTTTTAAACATGCGGACATCAAAATCTCATATAAACAATTAGACTGAAAGGTGTATATAGAAGTATTATAATATTTAGTGTTCGGTATAATTATTCACACGATTTGCAGAATATAGCGGTTTTCACTTTATGAACACACGTTTTTGAT-ACATAGCATAATTGTGAGAAAAT-AAAACATTGAAGAAACACGTTATGGGTGAGTTTTGTT-AACAGGACGAAGTTTG-TTCTGTAGTGGTATACATATATACATACATTTA-TCTTGAA-GCAAGGGATAAAAACTGGACAACATTAAGAAT-ACAATAAAGTATTGATTTCAAACAGCTTCATCATCA-TCTGTAATAACAGTTGGGTGAGGATTATTACTGTCAACTCCAGACTCCAAGCACTCTCTGTTATTTGACTCTACAGTGTGAATCTCAACTGCTTGACCTTCGGTCAGACTTACAAGGTCATCAGTAATCATAACACTACCGGAGTTTATAATTGACTTGTGATCAAGCTCCGTAGAATGAGGGGTGTAATCTTTACGTCCAAGTATTTCAGTACTTACTGAATGTGGTACAGCAACAGATGATGCAATATCTAGTTCACTAGCTGCTTCATCTAACAACTGAGCAGCACCAGTATGAATACTGCTATTAGATGTTATACAGTTTGAATCTGCAATAGATGAGATACATTCAGATGCCTCATCCAACGAAAGAAGAACTTGGGCTCTTGATGAGGAGTTTGAAGAAACCAGAGGTTGTGCTTGTAAGCTGTACATAATTTGTTGAGAGTGACCATCTACACTGGCAATTACTGCACCCATGTGAGTCCCTAGCAAAGCGCCGGCTTGCTGTAGAAACAAGGTCGGTCGTTGCTAGGATTAGTAAAAGAAAGAGAAAAAGCATCCAAGTTTAACCGATGTGTTAGGCACAATAAATACACTAGATGGACGTTCACAAAACAGCGATGCACGTTGCGATATAGTGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATATTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTTAATGAAATGTTTAGAGTTGATTTTTTACCTCGTGCCGAATTCTGGCCTCGAGG]
[+] EMBL CD075608 [ACCAAACAAGATATTTTGGAGTAAACCTTTTTAAACATGCGGACATCAAAATCTCATATAAACAATTAGACTGAAAGGTGTATATAGAAGTATTATAATATTTAGTGTTCGGTATAATTATTCACACGATTTGCAGAATATAGCGGTTTTCACTTTATGAACACACGTTTTTGAT ACATAGCATAATTGTGAGAAAAT AAAACATTGAAGAAACACGTTATGGGTGAGTTTTGTT AACAGGACGAAGTTTG TTCTGTAGTGGTATACATATATACATACATTTA TCTTGAA GCAAGGGATAAAAACTGGACAACATTAAGAAT ACAATAAAGTATTGATTTCAAACAGCTTCATCATCA TCTGTAATAACAGTTGGGTGAGGATTATTACTGTCAACTCCAGACTCCAAGCACTCTCTGTTATTTGACTCTACAGTGTGAATCTCAACTGCTTGACCTTCGGTCAGACTTACAAGGTCATCAGTAATCATAACACTACCGGAGTTTATAATTGACTTGTGATCAAGCTCCGTAGAATGAGGGGTGTAATCTTTACGTCCAAGTA ]
[-] EMBL AA559768 [ GAACACACGTTTTTGATAACATAGCATAATTGTGAGAAAATAAAAACATTGAAGAAACACGTTATGGGTGAGTTTTGTTAAACAGGACGAAGTTTGTTTCTGTAGTGGTATACATATATACATACATTTATTCTTGAAGGCAAGGGATAAAAACTGGACAACATTAAGAATAACAATAAAGTATTGATTTCAAACAGCTTCATCATCATTCTGTAATAACAGTTGGGTGAGGATTATTACTGTCAACTCCA ]
[-] EMBL CD081996 [ AGTTTATAATTGACTTGTGATCAAGCTCCGTAGAATGAGGGGTGTAATCTTTACGTCCAAGTATTTCAGTACTTACTGAATGTGGTACAGCAACAGATGATGCAATATCTAGTTCACTAGCTGCTTCATCTAACAACTGAGCAGCACCAGTATGAATACTGCTATTAGATGTTATACAGTTTGAATCTGCAATAGATGAGATACATTCAGATGCCTCATCCAACGAAAGAAGAACTTGGGCTCTTGATGAGGAGTTTGAAGAAACCAGAGGTTGTGCTTGTAAGCTGTACATAATTTGTTGAGAGTGACCATCTACACTGGCAATTACTGCACCCATGTGAGTCCCTAGCAAAGCGCCGGCTTGCTGTAGAAACAAGGTCGGTCGTTGCTAGGATTAGTAAAAGAAAGAGAAAAAGCATCCAAGTTTAACCGATGTGTTAGGCACAATAAATACACTAGATGGACGTTCACAAAACAGCGATGCACGTTGCGATATAGTGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATATTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTTAATGAAATGTTTAGAGTTGATTTTTTACCTCGTGCCGAATTCTGGCCTCGAGG]
[+] EMBL CD089263 [ ACTTACTGAATGTGGTACAGCAACAGATGATGCAATATCTAGTTCACTAGCTGCTTCATCTAACAACTGAGCAGCACCAGTATGAATACTGCTATTAGATGTTATACAGTTTGAATCTGCAATAGATGAGATACATTCAGATGCCTCATCCAACGAAAGAAGAACTTGGGCTCTTGATGAGGAGTTTGAAGAAACCAGAGGTTGTGCTTGTAAGCTGTACATAATTTGTTGAGAGTGACCATCTACACTGGCAATTACTGCACCCATGTGAGTCCCTAGCAAAGCGCCGGCTTGCTGTAGAAACAAGGTCGGTCGTTGCTAGGATTAGTAAAAGAAAGAGAAAAAGCATCCAAGTTTAACCG ]
consensusID : consensus_10872#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[TTCGGTCGTTGACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTTAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAGCTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG]
[-] EMBL CD185071 [TTCGGTCGTTGACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTTAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAGCTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10872#0 TGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATA 60
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 TTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTAC 120
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 AACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTCAATGAAAT 180
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 --------ACCAAACAAGATATTTTGGAGTAAACCTTTTTAAACATGCGGACATCAAAAT 52
consensus_10872#0 GTTTAGAGTTGATTTTTTATCAGATGTG-AGAAATATACGTGTGAATGCTCCAGAACAAA 239
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 CTCATATAAACAATTAGACTGAAAGGTGTATATAGAAGTATTATAATATTTAGTGTTCGG 112
consensus_10872#0 TAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCA 299
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 TATAATTATTCACACGATTTGCAGAATATAGCGGTTTTCACTTTATGAACACACGTTTTT 172
consensus_10872#0 TGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGA 359
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 GATACATAGCATAATTGTGAGAAAATAAAACATTGAAGAAACACGTTATGGGTGAGTTTT 232
consensus_10872#0 GTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTA 419
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 GTTAACAGGAC-GAAGTTTGTTCTGTAGTGGTATACATAT-ATACATACATTTATCTTGA 290
consensus_10872#0 ATAAAACGATACAATTTAGTTA-TATAAAAAATGACTGATAATAATAATGTTTATAACGA 478
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 AGCAAGGGATAAAAACTGGACAACATTAAGAATACAATAAAGTATTGATTTCAAACAGCT 350
consensus_10872#0 ACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTA 538
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 TCAT-CATCATCTGTAATAACAGTTGGGTGAGGATTATTACTGTCAACTCCAGACTCC-- 407
consensus_10872#0 AAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACT 598
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 AAGCACTCTCTGTTATTTGACTCTACAGTGTGAATCTCAACTGCTTGACCTTCGGTCA-- 465
consensus_10872#0 GAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGA-GA 657
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 GACTTACAAGGTCATCAGTAATCATAACACTACCGGAGTTTATAATTGACTTGTGATCAA 525
consensus_10872#0 GCAGTATACAACATTTTTTGTATGACTAATGTATCAGGCATACAAA---CAAACAAGCAA 714
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 GCTCCGTAGAATGAGGGGTGTAATCTTTACGTCCAAGTATTTCAGTACTTACTGAATGTG 585
consensus_10872#0 ACACATACACAGAAAAAGCGAAGAGACGTATATATGAGATTCATACGGACAGATTAACAG 774
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 GTACAGCAACAGATGATGCAATATCTAGTTCACTAGCTGCTTCATCTAACAACTGAGCAG 645
consensus_10872#0 CCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTT 834
consensus_10872#2 -----TTCGGTCGTTG-ACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTT 54
consensus_10872#1 C-ACCAGTATGAATACTGCTATTAGATG-TTATACAGTTTGAATCTGCAATAGATGAGAT 703
* * * ** ** ** * * **** *** ** * **** *
consensus_10872#0 CGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACT 894
consensus_10872#2 CGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACT 114
consensus_10872#1 --ACATTCAGATGCCTCATCCAACGAAAGAAGAACTTGGGCTCTTGATGAGGAGTTTGAA 761
** ** ***** * * *** ** * * * * * ***
consensus_10872#0 TGAACTAAAGGAAGTGTATTT---CCATCGGCAAG-----GATAGC-ACCAGCTTGACCG 945
consensus_10872#2 TGAACTTAAGGAAGTGTATTT---CCATCGGCAAG-----GATAGC-ACCAGCTTGACCG 165
consensus_10872#1 GAAACCAGAGGTTGTGCTTGTAAGCTGTACATAATTTGTTGAGAGTGACCATCTACACTG 821
*** *** *** * * * * ** ** ** **** ** ** *
consensus_10872#0 GCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAAT 1005
consensus_10872#2 GCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAAT 225
consensus_10872#1 GCAATTACTGCACCCATGTGAGTCCCTAGCAAA------GCGCCGGCTTGCTGTAGAAAC 875
*** *** ** * *** ** * * *** * * **** * ****
consensus_10872#0 GGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGA 1065
consensus_10872#2 GGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGA 285
consensus_10872#1 AA--GGTCGGTCGTTGCT--AGGATTAGTAAAAGAAAGAGAAAAAGCATCC--AAGTTTA 929
* * * * *** ** * ** * *** ** * *** * *
consensus_10872#0 GCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCA 1125
consensus_10872#2 GCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCA 345
consensus_10872#1 ACCGATGTGTTAGGCACAATAAATACACTAGATG--GACGTTCACAAAACAGC-GATGCA 986
* * *** *** ** * ** * * ** ** * * * **** ** **
consensus_10872#0 GAATTAGCTGAAGACTGGGC-GATA-GCTAGACCACTTCCAGAAGAAATCGTCGTAAAAT 1183
consensus_10872#2 GAATTAGCTGAAGACTGGGC-GATA-GCTAGACCACTTCCAGAAGAAATCGTCGTAAAAT 403
consensus_10872#1 CGTTGCGATATAGTGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACT 1046
* * * ** * **** ** * * * * * **** * ** * *
consensus_10872#0 GGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG 1243
consensus_10872#2 GGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG 463
consensus_10872#1 AAGATGATATATATT-ACCGTGTACATTTAATGTGCAA------ATTGTTAAAGTAACAA 1099
* * ** ** * *** ****** * ** * * ** *****
consensus_10872#0 ATGTTGCTCCAGCAAGG-GCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTC 1302
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 GAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCC 1159
consensus_10872#0 GAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCT 1362
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 GGACATGCATTTAATGAAATGTTTAGAGTTGATTTTTTACCTCGTGCCGAATTCTGGCCT 1219
consensus_10872#0 AGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTT 1422
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 CGAGG------------------------------------------------------- 1224
consensus_10872#0 TCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGTTTGCGTTGGC 1482
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 CCTAGTTGTCCTCTTGCTTCTTCACGTGGTACAATATCAATAAGAAAATCAAATTGATCT 1542
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 GTATCTCCATCACTGACTGCCATTGCAATATCATTTCTTTGAAGAGTACGCCGGCGGTTA 1602
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 CGTTCTGTATGAATCCATGCTCTCAACGTTAGTTCTCGTATGAAAAGCTCAGCAGCTTTT 1662
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 GCGAACAATATGGGTGCCTCAGCGCTTATCATCATACATTTGATATCATCATCCAACTTC 1722
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 ATAATCTTTTTAATACTAACCACAGCTATGTCCTGGCTGTTGAAAGAAGCAGGTTGACAC 1782
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 ATTCATGCCTCTATTTAAACACGTATAAGATCCCAGAACGATTACATTTGAGACTGACAA 1842
consensus_10872#2 ------------------------------------------------------------
consensus_10872#1 ------------------------------------------------------------
consensus_10872#0 TCTGTCAGTGGATCACTTGAGTAATCCATT 1872
consensus_10872#2 ------------------------------
consensus_10872#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||