These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1872 fasta sequence [TGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATATTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTCAATGAAATGTTTAGAGTTGATTTTTTATCAGATGTGAGAAATATACGTGTGAATGCTCCAGAACAAATAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCATGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGAGTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAACA-TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGA-GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAG-CTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTCGAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTTTCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGTTTGCGTTGGCCCTAGTTGTCCTCTTGCTTCTTCACGTGGTACAATATCAATAAGAAAATCAAATTGATCTGTATCTCCATCACTGACTGCCATTGCAATATCATTTCTTTGAAGAGTACGCCGGCGGTTACGTTCTGTATGAATCCATGCTCTCAACGTTAGTTCTCGTATGAAAAGCTCAGCAGCTTTTGCGAACAATATGGGTGCCTCAGCGCTTATCATCATACATTTGATATCATCATCCAACTTCATAATCTTTTTAATACTAACCACAGCTATGTCCTGGCTGTTGAAAGAAGCAGGTTGACACATTCATGCCTCTATTTAAACACGTATAAGATCCCAGAACGATTACATTTGAGACTGACAATCTGTCAGTGGATCACTTGAGTAATCCATT] [+] EMBL CD191889 [TGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATATTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTCAATGAAATGTTTAGAGTTGATTTTTTATCAGATGTGAGAAATATACGTGTGAATGCTCCAGAACAAATAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCATGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGAGTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAAT ] [+] EMBL CD154389 [ GAAATGTTTAGAGTTGATTTTTTATCAGATGTGAGAAATATACGTGTGAATGCTCCAGAACAAATAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCATGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGAGTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACT ] [+] EMBL CD154674 [ GAAATGTTTAGAGTTGATTTTTTATCAGATGTGAGAAATATACGTGTGAATGCTCCAGAACAAATAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCATGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGAGTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACT ] [+] EMBL CD197166 [ GAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAGTAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAAATATGGAGAGCAGTATACAACA TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATCTGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATT ] [-] EMBL CD140405 [ CAACGATAATAATAATGATATCATAAAAATCAATGACTTTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAACA TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATACATGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACT ] [-] EMBL CD196713 [ TTAATAAAACGATACAATTTAGTTATATAAAAAATGACTGATAATAATAATGTTTATAACGAACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAACATTTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACT ] [+] EMBL CD144842 [ ACAAAGAGGAAAGTGGGAAGATACAGAGAACTGGAAGATCTTAAAAAGGAAATAAACATGCAACATATTAGAGTCTTTATGAATTGGTCAAGAAACAACAACTGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAATA TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGAGGATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCGTCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAGGGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGT ] [-] EMBL CD153616 [ TGAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGAGAGCAGTATACAACA TTTTTTGTATGACTAATGTATCAGGCATACAAACAAACAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGA ] [-] EMBL CD152719 [ GTATGACTAATGTATCAGGCATACAAACAACCAAGCAAACACATACACAGAAAAAGCGAAGAGACGTATATATGA GATTCATACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTAAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAGGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTCCAGCTG ] [-] EMBL CD186324 [ ACGGACAGATTAACAGCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCGTCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAGTCTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATG ] [+] EMBL CD112997 [ GCCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTGGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAG CTGAAGACTAGGCGATAGCTAGACCACTTCCGGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGC ] [-] EMBL CD185055 [ ACACCAGCAGTGAATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAG CTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG ] [+] EMBL CD185078 [ AGTTCGACTGCCACCAGCCTCTTGAGTGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTAAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAG CTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTTACAGATG ] [+] EMBL CD111250 [ TTGGACTAATGTTTGACGTGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTCGAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTTTCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGTTTGCGTTGGCCCTAGTTG ] [+] EMBL CD110952 [ TTGGACTAATGTTTGACATGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTCGAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTTTCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGT ] [+] EMBL CD111096 [ TTGGACTAATGTTTGGCATGGAATGGCTGAATTAACAGATGTTGCTCCAGCAAGGGCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTCGAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTTTCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGT ] [-] EMBL CD118161 [ TTTGTGGTTGGGTAGAAGATCGTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCTAGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTC ] [+] EMBL CD124608 [ GTTGAATTCCCATTAGCATTTGAAGCTGATGTTGTTTGCGTTGGCCGACGATGTCCTCTTGCTTCTTCACGTGGTACAATATCAATAAGAAAATCAAATTGATCTGTATCTCCATCACTGACTGCCATTGCAATATCATTTCTTTGAAGAGTACGCCGGCGGTTACGTTCTGTATGAATCCATGCTCTCAACGTTAGTTCTCGTATGAAAAGCTCAGCAGCTTTTGCGAACAATATGGGTGCCTCAGCGCTTATCATCATACATTTGATATCATCATCCAACTTCATAATCTTTTTAATACTAACCACAGCTATGTCCTGGCTGTTGAAAGAAGCAGGTTGACACATTCATGCCTCTATTTAAACACGTATAAGATCCCAGAACGATTACATTTGAGACTGACAATCTGTCAGTGGATCACTTGAGTAATCCATT] consensusID : consensus_10872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1224 fasta sequence [ACCAAACAAGATATTTTGGAGTAAACCTTTTTAAACATGCGGACATCAAAATCTCATATAAACAATTAGACTGAAAGGTGTATATAGAAGTATTATAATATTTAGTGTTCGGTATAATTATTCACACGATTTGCAGAATATAGCGGTTTTCACTTTATGAACACACGTTTTTGAT-ACATAGCATAATTGTGAGAAAAT-AAAACATTGAAGAAACACGTTATGGGTGAGTTTTGTT-AACAGGACGAAGTTTG-TTCTGTAGTGGTATACATATATACATACATTTA-TCTTGAA-GCAAGGGATAAAAACTGGACAACATTAAGAAT-ACAATAAAGTATTGATTTCAAACAGCTTCATCATCA-TCTGTAATAACAGTTGGGTGAGGATTATTACTGTCAACTCCAGACTCCAAGCACTCTCTGTTATTTGACTCTACAGTGTGAATCTCAACTGCTTGACCTTCGGTCAGACTTACAAGGTCATCAGTAATCATAACACTACCGGAGTTTATAATTGACTTGTGATCAAGCTCCGTAGAATGAGGGGTGTAATCTTTACGTCCAAGTATTTCAGTACTTACTGAATGTGGTACAGCAACAGATGATGCAATATCTAGTTCACTAGCTGCTTCATCTAACAACTGAGCAGCACCAGTATGAATACTGCTATTAGATGTTATACAGTTTGAATCTGCAATAGATGAGATACATTCAGATGCCTCATCCAACGAAAGAAGAACTTGGGCTCTTGATGAGGAGTTTGAAGAAACCAGAGGTTGTGCTTGTAAGCTGTACATAATTTGTTGAGAGTGACCATCTACACTGGCAATTACTGCACCCATGTGAGTCCCTAGCAAAGCGCCGGCTTGCTGTAGAAACAAGGTCGGTCGTTGCTAGGATTAGTAAAAGAAAGAGAAAAAGCATCCAAGTTTAACCGATGTGTTAGGCACAATAAATACACTAGATGGACGTTCACAAAACAGCGATGCACGTTGCGATATAGTGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATATTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTTAATGAAATGTTTAGAGTTGATTTTTTACCTCGTGCCGAATTCTGGCCTCGAGG] [+] EMBL CD075608 [ACCAAACAAGATATTTTGGAGTAAACCTTTTTAAACATGCGGACATCAAAATCTCATATAAACAATTAGACTGAAAGGTGTATATAGAAGTATTATAATATTTAGTGTTCGGTATAATTATTCACACGATTTGCAGAATATAGCGGTTTTCACTTTATGAACACACGTTTTTGAT ACATAGCATAATTGTGAGAAAAT AAAACATTGAAGAAACACGTTATGGGTGAGTTTTGTT AACAGGACGAAGTTTG TTCTGTAGTGGTATACATATATACATACATTTA TCTTGAA GCAAGGGATAAAAACTGGACAACATTAAGAAT ACAATAAAGTATTGATTTCAAACAGCTTCATCATCA TCTGTAATAACAGTTGGGTGAGGATTATTACTGTCAACTCCAGACTCCAAGCACTCTCTGTTATTTGACTCTACAGTGTGAATCTCAACTGCTTGACCTTCGGTCAGACTTACAAGGTCATCAGTAATCATAACACTACCGGAGTTTATAATTGACTTGTGATCAAGCTCCGTAGAATGAGGGGTGTAATCTTTACGTCCAAGTA ] [-] EMBL AA559768 [ GAACACACGTTTTTGATAACATAGCATAATTGTGAGAAAATAAAAACATTGAAGAAACACGTTATGGGTGAGTTTTGTTAAACAGGACGAAGTTTGTTTCTGTAGTGGTATACATATATACATACATTTATTCTTGAAGGCAAGGGATAAAAACTGGACAACATTAAGAATAACAATAAAGTATTGATTTCAAACAGCTTCATCATCATTCTGTAATAACAGTTGGGTGAGGATTATTACTGTCAACTCCA ] [-] EMBL CD081996 [ AGTTTATAATTGACTTGTGATCAAGCTCCGTAGAATGAGGGGTGTAATCTTTACGTCCAAGTATTTCAGTACTTACTGAATGTGGTACAGCAACAGATGATGCAATATCTAGTTCACTAGCTGCTTCATCTAACAACTGAGCAGCACCAGTATGAATACTGCTATTAGATGTTATACAGTTTGAATCTGCAATAGATGAGATACATTCAGATGCCTCATCCAACGAAAGAAGAACTTGGGCTCTTGATGAGGAGTTTGAAGAAACCAGAGGTTGTGCTTGTAAGCTGTACATAATTTGTTGAGAGTGACCATCTACACTGGCAATTACTGCACCCATGTGAGTCCCTAGCAAAGCGCCGGCTTGCTGTAGAAACAAGGTCGGTCGTTGCTAGGATTAGTAAAAGAAAGAGAAAAAGCATCCAAGTTTAACCGATGTGTTAGGCACAATAAATACACTAGATGGACGTTCACAAAACAGCGATGCACGTTGCGATATAGTGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATATTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTTAATGAAATGTTTAGAGTTGATTTTTTACCTCGTGCCGAATTCTGGCCTCGAGG] [+] EMBL CD089263 [ ACTTACTGAATGTGGTACAGCAACAGATGATGCAATATCTAGTTCACTAGCTGCTTCATCTAACAACTGAGCAGCACCAGTATGAATACTGCTATTAGATGTTATACAGTTTGAATCTGCAATAGATGAGATACATTCAGATGCCTCATCCAACGAAAGAAGAACTTGGGCTCTTGATGAGGAGTTTGAAGAAACCAGAGGTTGTGCTTGTAAGCTGTACATAATTTGTTGAGAGTGACCATCTACACTGGCAATTACTGCACCCATGTGAGTCCCTAGCAAAGCGCCGGCTTGCTGTAGAAACAAGGTCGGTCGTTGCTAGGATTAGTAAAAGAAAGAGAAAAAGCATCCAAGTTTAACCG ] consensusID : consensus_10872#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [TTCGGTCGTTGACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTTAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAGCTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG] [-] EMBL CD185071 [TTCGGTCGTTGACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTTCGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACTTGAACTTAAGGAAGTGTATTTCCATCGGCAAGGATAGCACCAGCTTGACCGGCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAATGGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGAGCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCAGAATTAGCTGAAGACTGGGCGATAGCTAGACCACTTCCAGAAGAAATCGTCGTAAAATGGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10872#0 TGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACTAAGATGATATATA 60 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 TTACCGTGTACATTTAATGTGCAAATTGTTAAAGTAACAAGAGATCCTTTGTTAATGTAC 120 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 AACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCCGGACATGCATTCAATGAAAT 180 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 --------ACCAAACAAGATATTTTGGAGTAAACCTTTTTAAACATGCGGACATCAAAAT 52 consensus_10872#0 GTTTAGAGTTGATTTTTTATCAGATGTG-AGAAATATACGTGTGAATGCTCCAGAACAAA 239 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 CTCATATAAACAATTAGACTGAAAGGTGTATATAGAAGTATTATAATATTTAGTGTTCGG 112 consensus_10872#0 TAGACCCATATATATAGTAAGGGGAACATCTAGTCAAGTTGATTTTTTGTACAATATGCA 299 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 TATAATTATTCACACGATTTGCAGAATATAGCGGTTTTCACTTTATGAACACACGTTTTT 172 consensus_10872#0 TGGAAATTGTCTGATATAGAGACGAGATTTCACTTATAAAATATGAAAGAGACACAGAGA 359 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 GATACATAGCATAATTGTGAGAAAATAAAACATTGAAGAAACACGTTATGGGTGAGTTTT 232 consensus_10872#0 GTAATTAGCAGAGGAACAACAACGATAATAATAATGATATCATAAAAATCAATGACTTTA 419 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 GTTAACAGGAC-GAAGTTTGTTCTGTAGTGGTATACATAT-ATACATACATTTATCTTGA 290 consensus_10872#0 ATAAAACGATACAATTTAGTTA-TATAAAAAATGACTGATAATAATAATGTTTATAACGA 478 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 AGCAAGGGATAAAAACTGGACAACATTAAGAATACAATAAAGTATTGATTTCAAACAGCT 350 consensus_10872#0 ACATGCATGGATTGTAGACAAAGAGGAAAGTGGGAAGATACAGAGAACAGGAAGATCTTA 538 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 TCAT-CATCATCTGTAATAACAGTTGGGTGAGGATTATTACTGTCAACTCCAGACTCC-- 407 consensus_10872#0 AAAAGGAAATAAACATGCAACATATTAGAATCTTTATGAATTGGTCAAGAAACAACAACT 598 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 AAGCACTCTCTGTTATTTGACTCTACAGTGTGAATCTCAACTGCTTGACCTTCGGTCA-- 465 consensus_10872#0 GAATGATTAAATGTTCACACAAGTAAAAATGAAATGAACATAAACATGAGATATGGA-GA 657 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 GACTTACAAGGTCATCAGTAATCATAACACTACCGGAGTTTATAATTGACTTGTGATCAA 525 consensus_10872#0 GCAGTATACAACATTTTTTGTATGACTAATGTATCAGGCATACAAA---CAAACAAGCAA 714 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 GCTCCGTAGAATGAGGGGTGTAATCTTTACGTCCAAGTATTTCAGTACTTACTGAATGTG 585 consensus_10872#0 ACACATACACAGAAAAAGCGAAGAGACGTATATATGAGATTCATACGGACAGATTAACAG 774 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 GTACAGCAACAGATGATGCAATATCTAGTTCACTAGCTGCTTCATCTAACAACTGAGCAG 645 consensus_10872#0 CCACTTGCGATACTTACACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTT 834 consensus_10872#2 -----TTCGGTCGTTG-ACCAGCAGTTGATTCTGGCATCTGAAGCTGTAAAATTTGAGTT 54 consensus_10872#1 C-ACCAGTATGAATACTGCTATTAGATG-TTATACAGTTTGAATCTGCAATAGATGAGAT 703 * * * ** ** ** * * **** *** ** * **** * consensus_10872#0 CGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACT 894 consensus_10872#2 CGACTGCCACCAGCCTCTTGAATGATTGGAACTGCTATGCCACCGGGTTGAGAGACAACT 114 consensus_10872#1 --ACATTCAGATGCCTCATCCAACGAAAGAAGAACTTGGGCTCTTGATGAGGAGTTTGAA 761 ** ** ***** * * *** ** * * * * * *** consensus_10872#0 TGAACTAAAGGAAGTGTATTT---CCATCGGCAAG-----GATAGC-ACCAGCTTGACCG 945 consensus_10872#2 TGAACTTAAGGAAGTGTATTT---CCATCGGCAAG-----GATAGC-ACCAGCTTGACCG 165 consensus_10872#1 GAAACCAGAGGTTGTGCTTGTAAGCTGTACATAATTTGTTGAGAGTGACCATCTACACTG 821 *** *** *** * * * * ** ** ** **** ** ** * consensus_10872#0 GCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAAT 1005 consensus_10872#2 GCAGATACAGCGTCAGTGTTAGCAGCCTGGAAATGTTGGGGAAGGACTTGTATTTGAAAT 225 consensus_10872#1 GCAATTACTGCACCCATGTGAGTCCCTAGCAAA------GCGCCGGCTTGCTGTAGAAAC 875 *** *** ** * *** ** * * *** * * **** * **** consensus_10872#0 GGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGA 1065 consensus_10872#2 GGCTGACCAGCTGATGCCCCAGCTGTGCCAACCGGAAGCTGAAGAACATATTGCAAAGGA 285 consensus_10872#1 AA--GGTCGGTCGTTGCT--AGGATTAGTAAAAGAAAGAGAAAAAGCATCC--AAGTTTA 929 * * * * *** ** * ** * *** ** * *** * * consensus_10872#0 GCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCA 1125 consensus_10872#2 GCTGCGGTGGTAGCGACTGTGGTAGCATTGGGTGCTGAAGCTGCTATTACAGTTGACCCA 345 consensus_10872#1 ACCGATGTGTTAGGCACAATAAATACACTAGATG--GACGTTCACAAAACAGC-GATGCA 986 * * *** *** ** * ** * * ** ** * * * **** ** ** consensus_10872#0 GAATTAGCTGAAGACTGGGC-GATA-GCTAGACCACTTCCAGAAGAAATCGTCGTAAAAT 1183 consensus_10872#2 GAATTAGCTGAAGACTGGGC-GATA-GCTAGACCACTTCCAGAAGAAATCGTCGTAAAAT 403 consensus_10872#1 CGTTGCGATATAGTGTATATAGATATAAAAGGAAAGCTTCGGGAAAAATGCTTTTACACT 1046 * * * ** * **** ** * * * * * **** * ** * * consensus_10872#0 GGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG 1243 consensus_10872#2 GGACAGCTGTAGGTTGATTTTGTTGGACTAATGTTTGACATGGAATGGCTGAATTAACAG 463 consensus_10872#1 AAGATGATATATATT-ACCGTGTACATTTAATGTGCAA------ATTGTTAAAGTAACAA 1099 * * ** ** * *** ****** * ** * * ** ***** consensus_10872#0 ATGTTGCTCCAGCAAGG-GCCGCAGATGCCAGAGCAACAGTTACTGTTTGTGGTTGGGTC 1302 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 GAGATCCTTTGTTAATGTACAACAAATAATCCAGTTGAATCGAATTTTCTAATCTTTTCC 1159 consensus_10872#0 GAAGATCCTGTAACATCGTTGGAAAGACCGGAAACAACCATATGGCCAGAGTTTTGTCCT 1362 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 GGACATGCATTTAATGAAATGTTTAGAGTTGATTTTTTACCTCGTGCCGAATTCTGGCCT 1219 consensus_10872#0 AGAGATAATGAGTGAGTATCATTTGTATTTGTAAGAAAATTATTTCTATGTGAAGGATTT 1422 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 CGAGG------------------------------------------------------- 1224 consensus_10872#0 TCTGACTTAATATTCGTTGAATTCCCATTAGCATTTGAAGCTGATGTTGTTTGCGTTGGC 1482 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 CCTAGTTGTCCTCTTGCTTCTTCACGTGGTACAATATCAATAAGAAAATCAAATTGATCT 1542 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 GTATCTCCATCACTGACTGCCATTGCAATATCATTTCTTTGAAGAGTACGCCGGCGGTTA 1602 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 CGTTCTGTATGAATCCATGCTCTCAACGTTAGTTCTCGTATGAAAAGCTCAGCAGCTTTT 1662 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 GCGAACAATATGGGTGCCTCAGCGCTTATCATCATACATTTGATATCATCATCCAACTTC 1722 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 ATAATCTTTTTAATACTAACCACAGCTATGTCCTGGCTGTTGAAAGAAGCAGGTTGACAC 1782 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 ATTCATGCCTCTATTTAAACACGTATAAGATCCCAGAACGATTACATTTGAGACTGACAA 1842 consensus_10872#2 ------------------------------------------------------------ consensus_10872#1 ------------------------------------------------------------ consensus_10872#0 TCTGTCAGTGGATCACTTGAGTAATCCATT 1872 consensus_10872#2 ------------------------------ consensus_10872#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||