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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1557 fasta sequence
[GTATGGCACATTATCATGCTGCTCACTTCATAGGTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGG-AAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG-AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATA-GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT-AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA-TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGATTGT]
[+] EMBL CD142450 [GTATGGCACATTATCATGCTGCTCACTTCATAGGTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGG AAATATCANAAGATTTGGCGTACTACCGNTCGTGCTT ]
[+] EMBL CD142467 [ GTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGG AAATATCANAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATC ]
[+] EMBL CD142333 [ CTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGCCAAGACGGACTCATGcata ]
[-] EMBL CD198574 [ AAGAGGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGGAAGCAGGG AAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAGATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAA ]
[+] EMBL CD083106 [ AGCAGGG AAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTNTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTA ]
[+] EMBL CD081886 [ gAGCAGGGNAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTNATAGACGTTNTCACA ]
[-] EMBL CD168267 [ GCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACGGACCTAGTCAGTGAAGAAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGT ]
[-] EMBL CD142473 [ GGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACCTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAA ]
[-] EMBL CD142309 [ AATC TATGCCTCATTCATAAGACAGACCTAGTCAGTGAAG AAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAACCCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAA ]
[-] EMBL CD119461 [ taTTCAAGTCAGAAGGCANAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACA TAAAAGAAATTGCTTGTAAAAAAAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAAAACAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACTCTTTGCTGCGTTTATAGACGgt ]
[+] EMBL CD077464 [ AGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCANATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTG ]
[-] EMBL CD142347 [ TTCCCTGGTTC TATTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAA ]
[-] EMBL CD119385 [ TTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATCAAGTGATTCTATTCGAAAGAGCAGCAAAAATGAAAATTGCTTAACATAATAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAAATCAAATTGTCATGTAGTAAAGATGGAGCAAATTTCTCGAAGAGTGAA ]
[+] EMBL CD080041 [ CTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTTCACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATANGCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTATTACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTTAAAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGNCTCTAATTCTTTACTGGTGNCGAACTT CATCTTTACATC ACTTTTG AATATTC AC AAATGCCCATCG TTTTCATCG ACA TTTTAG AATATNCATCCAAGT GATCAGC CGTAAAAAtt ]
[+] EMBL CD192015 [ TGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATA GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAAT ]
[-] EMBL AW017143 [ TGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAATACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGATCAACCACATTCGGCAATA GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTAACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGA ]
[-] EMBL CD074085 [ GGAANAATTAGAACAACCACATTCGGCAATA GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGAT ]
[-] EMBL CD075660 [ AAAAATTAGAACAACCACATTCGGCAATA GCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGAT ]
[-] EMBL CD074781 [ AGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGATTGT]
[-] EMBL CD076680 [ ctgtTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTTT AAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTCAACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCAGCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTGTATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTA TTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGAT ]
[-] EMBL CD075593 [ TGACTTTTGA TTTTATGAGCTATTTTTTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTGCATAATTATGTTGATAATTGAT ]
consensusID : consensus_10883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1073 fasta sequence
[CCCTCGNAGGCCAANAATTCGGCACGAGGAAAGCAGATGTACCTTTCGAGTGTATAAAACTCAGTAACCACTTTTGCCAATTGATATTGCAGGTCGTGTACAAAAAACTTGTCTATCATTTCTGATTTTTACAAGCGTTCCTAATTTCATTATAATTACTATTATGATAGTATGAGCGATCGGAGATATGTCTCGTATTGCCCATTAGGTTTCAAATGACTTACTAAATGATTTACATCAATTTTATTTTACGAATGTTGGATATTTCGCAGTTTGTTTTAAATCCATGTCCTTCCGGTTTTTTTCAGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATAGCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTNTAAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAATTTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGNCTCTAATTCTTTACTGTTGTCGAACTTNCATCTTTACATCCAACTTTTGAATATTCACAAATGCCCATCGNTNTCATCGACATTTTTAGTATATTCATTCAGTAGATCAGACGTAAAACATTNTGCTTGATACACACCTAGTATGNTCAACAGTTTGATCTGCTTGAATGCTAACGATNCCGACTTGATTTAGACTATTCTATATGTTACGGTATCTTTCACCTACTGATGAATGCCATATGTGATGATGTATAAAAAAAACGCTGCGCAGCTTCTTTAGTATTATGCGCGGTTACNGAGGACGGTCCATACTCACTCCGGATAAGCACTCTCCAGGACTGCTNCGGGGCCCCACCCCTCTTCTCTGCGTGGCAGGGGGG]
[+] EMBL CD082047 [CCCTCGNAGGCCAANAATTCGGCACGAGGAAAGCAGATGTACCTTTCGAGTGTATAAAACTCAGTAACCACTTTTGCCAATTGATATTGCAGGTCGTGTACAAAAAACTTGTCTATCATTTCTGATTTTTACAAGCGTTCCTAATTTCATTATAATTACTATTATGATAGTATGAGCGATCGGAGATATGTCTCGTATTGCCCATTAGGTTTCAAATGACTTACTAAATGATTTACATCAATTTTATTTTACGAATGTTGGATATTTCGCAGTTTGTTTTAAATCCATGTCCTTCCGGTTTTTTTCAGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGCAATAGCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATTTAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTNTAAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAATTTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGNCTCTAATTCTTTACTGTTGTCGAACTTNCATCTTTACATCCAACTTTTGAATATTCACAAATGCCCATCGNTNTCATCGACATTTTTAGTATATTCATTCAGTAGATCAGACGTAAAACATTNTGCTTGATACACACCTAGTATGNTCAACAGTTTGATCTGCTTGAATGCTAACGATNCCGACTTGATTTAGACTATTCTATATGTTACGGTATCTTTCACCTACTGATGAATGCCATATGTGATGATGTATAAAAAAAACGCTGCGCAGCTTCTTTAGTATTATGCGCGGTTACNGAGGACGGTCCATACTCACTCCGGATAAGCACTCTCCAGGACTGCTNCGGGGCCCCACCCCTCTTCTCTGCGTGGCAGGGGGG]
consensusID : consensus_10883#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[GGAATGAGGAAGAAAGTCTTGTTGATGGGGAAATCTGGTTCTATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTNNNNNNNNNNNNAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGGAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATNNNNNNNNCCTAGTCAGTGAAGAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAATAAGC]
[+] EMBL CD080948 [GGAATGAGGAAGAAAGTCTTGTTGATGGGGAAATCTGGTTCTATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTTCTAAATTTATGGGATTGCGGGGGTCAAGATGGATTCATGGAAAGCTATTTNNNNNNNNNNNNAGAAACAATATTCAGAAATGTTGAGGTCTTAATCTATGTTTTCGATATTGAAAGCAGGGAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGGATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATNNNNNNNNCCTAGTCAGTGAAGAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAGTTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTAAAGCTTGGTCTAAAATTGTTGAAGGTAGTTTAAAGCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAACATTTTTGGAAATTGCTTGTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGAGAAATAAGC]
consensusID : consensus_10883#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence
[GTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTCCTAAATTTATGGGATTGCGGGGGGTAAATCTGTCAAATACTTATCTATTTTCCATAGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACATATTCAGAAATGTTGAGGTCTTAATCTATNGTTTCGATATTGAAAGCA]
[+] EMBL CD142321 [GTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGCAAACTTTATCGCTCGAGATACTCGCAGGCTTGGTCCTACAATGGACGTAGAACACACTCACCTACGACTGCTAGGTGGATTGGTCCTAAATTTATGGGATTGCGGGGGGTAAATCTGTCAAATACTTATCTATTTTCCATAGTCAAGATGGATTCATGGAAAGCTATTTCGTCAACCAAAGAGAAACATATTCAGAAATGTTGAGGTCTTAATCTATNGTTTCGATATTGAAAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 ------------------------------------------------------------
consensus_10883#1 CCCTCGNAGGCCAANAATTCGGCACGAGGAAAGCAGATGTACCTTTCGAGTGTATAAAAC 60
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 ----------------------------GTATGGCACATTATCATGCTGCTCACTTCATA 32
consensus_10883#1 TCAGTAACCACTTTTGCCAATTGATATTGCAGGTCGTGTACAAAAAACTTGTCTATCATT 120
consensus_10883#2 --------GGAATGAGGAAGAAAGTCTTGTTGATGGGGAAATCTGG----TTCTATTTGC 48
consensus_10883#3 -GTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGC 59
consensus_10883#0 GGTCTTGTTGATGGGGAAATCTGGTTCAGGCAAGACGAGTATGAGAAGTATCATATTTGC 92
consensus_10883#1 TCTGATTTTTACAAGCGTTCCTAATTTCATTATAATTACTATTATGATAGTATGAGCGAT 180
* * ** * *
consensus_10883#2 AAACTTTATCGCTCGAGATACTCGC-AGGCTTG----GTCCTAC-AATGGACGTAGAACA 102
consensus_10883#3 AAACTTTATCGCTCGAGATACTCGC-AGGCTTG----GTCCTAC-AATGGACGTAGAACA 113
consensus_10883#0 AAACTTTATCGCTCGAGATACTCGC-AGGCTTG----GTCCTAC-AATGGACGTAGAACA 146
consensus_10883#1 CGGAGATATGTCTCGTATTGCCCATTAGGTTTCAAATGACTTACTAAATGATTTACATCA 240
*** **** * * * *** ** * * *** ** ** ** * **
consensus_10883#2 CACTCACCT-ACGACTGCTAGGTG------GATTGGTTCTAAATTTATGGGATTGCGGGG 155
consensus_10883#3 CACTCACCT-ACGACTGCTAGGTG------GATTGGTCCTAAATTTATGGGATTGCGGGG 166
consensus_10883#0 CACTCACCT-ACGACTGCTAGGTG------GATTGGTTCTAAATTTATGGGATTGCGGGG 199
consensus_10883#1 ATTTTATTTTACGAATGTTGGATATTTCGCAGTTTGTTTTAAATCCATGTCCTTCCGGTT 300
* * * **** ** * * * ** ** ***** *** ** ***
consensus_10883#2 G----------------------------------TCAAGATGGATTCATGGAA---AGC 178
consensus_10883#3 GGTAAATCTGTCAAATACTTATCTATTTTCCATAGTCAAGATGGATTCATGGAA---AGC 223
consensus_10883#0 G----------------------------------TCAAGATGGATTCATGGAA---AGC 222
consensus_10883#1 TTT--TTCAGCCTCTTCTGCAACTTTGCTGAATATTCGCAATGCACGTAAGCACTTTGAA 358
** *** * * * *
consensus_10883#2 TATTTNNNNNNNNNNNNAGAAACAATATTCAGAAATGTTGAGGTCT---TAATCTATGTT 235
consensus_10883#3 TATTTCGTCAACCAAAGAGAAACA-TATTCAGAAATGTTGAGGTCT---TAATCTATNGT 279
consensus_10883#0 TATTTCGTCAACCAAAGAGAAACAATATTCAGAAATGTTGAGGTCT---TAATCTATGTT 279
consensus_10883#1 TATTTGGAAAAATTAGAACAACCA-CATTCGGCAATAGCTCGTTGTGGCTAGACACTTGT 417
***** * ** ** **** * *** * * * ** * * *
consensus_10883#2 TTCGATAT--TGAAAGCAGGGAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGG 293
consensus_10883#3 TTCGATAT--TGAAAGCA------------------------------------------ 295
consensus_10883#0 TTCGATAT--TGAAAGCAGGGAAATATCAAAAGATTTGGCGTACTACCGTTCGTGCTTGG 337
consensus_10883#1 TTGGATCTCTTGACAGTTCCTTGTTCCTTTATGAGATAACTTTTTGACTGGAGATTCCAG 477
** *** * *** **
consensus_10883#2 ATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATNNNNNNNNCC 353
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 ATGCCGTGAATCAAAATTCCCCCGGCGCGAAAATCTTTTGCCTCATTCATAAGACAGACC 397
consensus_10883#1 TATGACTGTATATTGAATTGCTTATTTTTAA---TTTAAAACATGGTCATCGTAATACGT 534
consensus_10883#2 TAGTCAGTGAAGAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAG 413
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 TAGTCAGTGAAGAAAAAAAAGATGAAGTATTTCAAGTCAGAAGGCAAAATATCGAAGCAG 457
consensus_10883#1 CAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAATGAATTGTACATTTNTAAGAAGTTG 594
consensus_10883#2 TTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTA 473
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 TTACGAAACCATTCACTTGTTCATGCTTCGCTACGTCAATATGGGATGAAACATTATTTA 517
consensus_10883#1 TGATAGTAAATGAAGTATACATAATCTATTTTACTGATGTCACTGGACGAATTTTTTCTG 654
consensus_10883#2 AAGCTTGGTCTAAAATTGTT------------------------------GAAGGTAGTT 503
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 AAGCTTGGTCTAAAATTGTTTATGAACTTATTCCAAATATCAAAATGTTGGAAGGTAGTT 577
consensus_10883#1 TTATTGGGCTAAGGATATTATTTCTATCTTTTATATAGNCTCTAATTCTTTACTGTTGTC 714
consensus_10883#2 TAAA--GCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAAC 561
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 TAAA--GCAACTTTGTGAAGTACTGGAAGCTGATGAAGTGATTCTATTCGAAAGAGCAAC 635
consensus_10883#1 GAACTTNCATCTTTACATCCAACTTTTGAATATTCACAAATGCCCATCGNTNTCATCGAC 774
consensus_10883#2 ATTTTTGGAAATTGCTT---GTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGA 618
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 ATTTTTGGAAATTGCTT---GTCATTCTAGAGTTCCACATTCTGATGTTCATAGGTTTGA 692
consensus_10883#1 ATTTTTAGTATATTCATTCAGTAGATCAGACGTAAAACATTNTGCTTGATACACACCTAG 834
consensus_10883#2 GAAATAAGC--------------------------------------------------- 627
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 GAAAATAAGCAACATTGTGAAACAATTCAAATTGTCATGTAGTAAAGTTGGAGCAAATTT 752
consensus_10883#1 TATGNTCAACAGTTTGATCTGCTTGAATGCTAACGATNCCGACTTGATTTAGACTATTCT 894
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 CACGAAGATTGAACTGCGCAACCAACACTTTGCTGCGTTTATAGACGTTTTCACATCCAA 812
consensus_10883#1 ATATGTTACGGTATCTTTCACCTACTGATGAATGCCATATGTGATGATGTATAAAAAAAA 954
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 TACATACATTATGGTGGTATGTTCTGATCTATCCATCGCCTCTTCTGCAACTTTGCTGAA 872
consensus_10883#1 CGCTGCGCAGCTTCTTTAGTATTATGCGCGGTTACNGAGGACGGTCCATACTCACTCCGG 1014
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 TATTCGCAATGCACGTAAGCACTTTGAATATTTGGAAAAATTAGAACAACCACATTCGGC 932
consensus_10883#1 ATAAGCACTCTCCAGGACTGCTNCGGGGCCCCACCCCTCTTCTCTGCGTGGCAGGGGGG- 1073
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 AATAGCTCGTTGTGGCTAGACACTTGTTTGGATCTCTTGACAGTTCCTTGTTCCTTTATG 992
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 AGATAACTTTTTGACTGGAGATTCCAGTATGACTGTATATTGAATTGCTTATTTTTAATT 1052
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 TAAAACATGGTCATCGTAATACGTCAGTTGTTGTACAGTCCTGTTTTACTGCTGTCTAAT 1112
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 GAATTGTACATTTTTAAGAAGTTGTGATAGTAAATGAAGTATACATAATCTATTTTACTG 1172
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 ATGTCACTGGACGAAATTTTTCTGTTATTGGGCTAAGGATATTATTTCTATCTTTTATAT 1232
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 AGTCTCTAATTCTTTACTGTTGTCGAACTTCCATCTTAACATCCAACTTTTGAAATATTC 1292
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 AACAAAATGCCCATCGTTTTTCATCGTACATTTTTTAGTATTATTCATTCAAGTAGATCA 1352
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 GCACGTAAAAACAATTTTGCTTGATTAACACCACCTAAGTAATTGTTTCAAAACAGTTTG 1412
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 TATTCATGCTATGAAAATGCTTAAACAGATTTCCTGACTTTTGATTTTTATGAGCTATTT 1472
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 ------------------------------------------------------------
consensus_10883#3 ------------------------------------------------------------
consensus_10883#0 TTCTAATTATGTTATCACGTGTTATCTTTTTCCAATCCTTATCTTGATTGTAAAAATTTG 1532
consensus_10883#1 ------------------------------------------------------------
consensus_10883#2 -------------------------
consensus_10883#3 -------------------------
consensus_10883#0 CATAATTATGTTGATAATTGATTGT 1557
consensus_10883#1 -------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||