These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1267 fasta sequence [ACGCAGTACGGTAATGCAGCTGCATGGCATGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGACACATGATAGAAAATTTATTTCCACAATCAGTTTATACAGGTGAAAAAATTAGGCAAAAAATGATATAAAGAACGATAGGATTAAAAAAGACAGACAAATGTGCATATATGTTCACTATTTTATAGTCATATGAAAAGGGAGAATAGGGGGGAATCGTTGATAGGTTGGTATGAGAGAAACAATTTAATTAAA-AT-CATTTTGAA-TCCGGTTTTATATAAATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTGATTGTGAACCTAATTGTTTTGCATCCCATAAATGTTCTTCTTCTATACGGCAGATAAGAAGACCTTCAGGACTGATACGTGGTTGGAAATTGGCTAATATTTCATTCAAAGCTCTAGATAGGCTAGTAAACGCGGGATCTCCAAATAAGTTTACAGTACGACCATTTTCGTTGAGATACTCTTGAATACCTAGACACAAATAGAAAATTGAATCAGCTACATAACATTCATTATTTGGTTTGCGAACTTCACGAACAAATTGACTTAGTGCGATATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCCAT-AGAGAATTTCAAATGGTAATTAGCATCAGATGTAAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGGTGCGGCGGAAGCGATTGATCTATCTCTCTT-CACTACTGTATTGACTCATTACCGAT] [+] EMBL AI975907 [ACGCAGTACGGTAATGCAGCTGCATGGCATGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGACACATGATAGAAAATTTATTTCCACAATCAGTTTATACAGGTGAAAAAATTAGGCAAAAAATGATATAAAGAACGATAGGATTAAAAAAGACAGACAAATGTGCATATATGTTCACTATTTTATAGTCATATGAAAAGGGAGAATAGGGGGGAATCGTTGATAGGTTGGTATGAGAGAAACAATTTAATTAAAGAT CATTTTGAATTCCGGTTTTATATAAATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTTAGTTGGTCAAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTATTTCTG ] [+] EMBL CD144903 [ TATTTTATAGTCATATGAAAAGGGAGAATAGGGGGGAATCGTTGATAGGTTGGTATGAGAGAAACAATTTAATCAAA ATACATATAGAA TACGGATATATATAAATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACAT ] [+] EMBL CD118610 [ AAATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTCAGTCGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCA ] [-] EMBL CD118630 [ AATGAGCTTAGAAGCCCCCATCTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTATTACTTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAG ] [+] EMBL CD130729 [ gGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGAATTACCTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGGGGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGGCGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTGATTGTGAACCTAATTGTTTT ] [+] EMBL CD154313 [ TGTTGAGGATTCGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTGATTGTGAACCTAATTGTTTTGCATCCCATAAATGTTCTTCTTCTATACGGCAGATAAGAAGACCTTCAGGACTGATACGTGGTTGGAAATTGGCTAATATTTCATTCAAAGCTCTAGATAGGCTAGTAAACGCGGGATCTCCAAATAAGTTTACAGTACGACCATTTTCGTTGAGATACTCTTGAATACCTAGACACAAATAGAAAATTGAATCAGCTACATAACATTCATTATTTGGTTTGCGAACTTCACGAACAAATTGACTTAGTGCGATATTAAGATCGGTATCACTCATATTTAATANATCAGCATATANATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCCAT AGAGAATTTCANATGGTANTTAGCATCAGATGTAAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGGTGCGGCGGAAGCGATTGATCTATCTCTCTT CACTACT ] [+] EMBL CD154615 [ TGTTGAGGATTTGCATCTAAACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGAGAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAAGTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTGATTGTGAACCTAATTGTTTTGCTTCCCATAAATGTTCTTCTTCTATACGACAGATAAGAAGACCTTCAGGACTGATACGTGGTTGGAAATTGGCTAATATTTCATTCAAAGCTCTAGATAGGCTAGTAAACGCGGGATCTCCAAATAAGTTTACAGTACGACCATTTTCGTTGAGATACTCTTGAATACCTAGACACAAATAGAAAATTGAATCAGCTACATAACATTCATTATTTGGTATGCGAACTTCACGAACAAATTGACTTAGTGCGGTATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGAATATTGNTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTG ] [-] EMBL CD145657 [ TGCGATATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGGATATTGTTGCCTTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGATGATTTTTGCTGTGCCCAGTGACGCCACGCATTGAT CCCATAAGAGAATTTCAAATGGTAATTAGCATCAGATGTGAGTATGGGTGTAAGAGTTTGACGGGGCCGCTTA ] [+] EMBL CD147435 [ CCCATAAGAGAATTTCAAATGGTAATTAGCATCAGATGTTAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGTGGCGGTGGAAGCGATTGATCTATCTCTCTTCCACTACTGTATTGACTCATTACCGAT] consensusID : consensus_10891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1206 fasta sequence [GCATTTAGGTGTAAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGTGGCGGCGGAAGCGATTGATCTATCCCTCTTCCACTACTGGAGTGACTCATTACCGATGTCATCGGTTGATGATGGTG-AAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT-TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTGGAACTGGGCATGGTAACGGATAGGGGATTGCGTATGGCACTGGTCTTGCGTATAAACATACTGGAAAGGGCACATAGATTGGAACCGGGATAGGTATCGGTAGTACAAGTGGTA-TTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAACTAAAACTTGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGT-TTTGTATCAACAGTCTGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGCAACTGGGGCCGCTGGTTGTAAAATGACT-TGTTGTTCAATGCCCAATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTCGAGGGCGACCTCGACCACTAGTACCAGCTATTGCAGCGGCTAAACGATAACCAGAGTCTCGGTCCAC] [-] EMBL CD116948 [GCATTTAGGTGTAAGTATGGGTGTAAGAGTTTGACGGGACCGCTTAGTTGGGGGTGGCGGCGGAAGCGATTGATCTATCCCTCTTCCACTACTGGAGTGACTCATTACCGATGTCATCGGTTGATGATGGTG AAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTGGAACTGGGCATGGTAACGGATAGGGGATTGCGTATGGCACTGGTCTTGCGTATAAACATACTGGA ] [-] EMBL AI067816 [ ACTGGAGTGACTCATTACCGATGTCATCGGTTGATGATGGTG AAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTGGAACTG ] [-] EMBL AI068130 [ ATTACCGATGTCATCGGTTGATGATGGTG AAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTG ] [-] EMBL AI067675 [ tGTGAAAATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTG ] [-] EMBL AI067308 [ AATGGTGGATTATGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTTTTAGGAGTGAT TAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTAGCATCAAAGACAAGTGGAATTG ] [+] EMBL CD197273 [ ATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTATCGGAAGAATCACTCAGTGTTTTAGGAGTGATATAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGa ] [-] EMBL CD127372 [ GGATTGCGTATGGCACTGGTCTTGCGTATAAACATACTGGAAAGGGCACATAGATTGGAACCGGGATAGGTATCGGTAGTACAAGTGGTATTTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAACTAAAACTAGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGT TTTGTATCAACAGTCTGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGCAACTGGGGCCGCTGGTTGTAAAATGACT TGTTGTTCAATGCCCAATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTCGAGGGCGACCTCGACCAATAGTACCAGCTATTGCAGCGGCTAAACGATAACCAGAGTCTCGGTCCAC] [-] EMBL CD094965 [ CTGGAAAGGGCACATAGATTGGAACCGGGATAGGTATCGGTAGTACAAGTGGTA TTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAACTAAAACTTGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGT TTTGTATCAACAGTCTGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCGCAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGC ] [-] EMBL CD095022 [ CTGGAAAGGGCACATAGATTGGAACCGGGATAGGTATCGGTAGTACAAGTGGTA TTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAACTAAAACTTGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGT TTTGTATCAACAGTCT GGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGC ] [-] EMBL CD127895 [ CAAGTGGTA TTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTTGGGTGCCATATTCGACAAAAGCGATGTCATCAGTTGACGTCTCAGCACAAATAAAGCTTGGTTGGTCAGTTTTCATTAACATTTGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAAGTGGT TTTGTATCAACAGTCTGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGCAACTGGGGCCGTTGGTTGTAAAATGAATATGTTGTTCAATGCCCAATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTCGAGGGCGACCTCGACCACTAGTACCAGCTATTGCAGCGGCTAAACGAT ] [+] EMBL CD068097 [ TGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTACAAGTGGTATTAGTATCAACAGTCTGGGTTTGCATTTCGA ] [-] EMBL CD132415 [ ACAGCAACACCATGTTGGGATAAATTCTCGTATATTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAGCTTTGTTGCGCATGGCAACTGGGGCCGCTGGTTGTAAAATGACT TGTTGTTCAATGCCCAATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTCGAGGGCGACCTCGACCACTAGTACCAGCTATTGCAGCGGCT ] consensusID : consensus_10891#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence [ATTGTTGTGTGGCAGTTGACTCGTGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTCTTAGGAGTGATATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCATAAGAGAATTT] [+] EMBL CD197598 [ATTGTTGTGTGGCAGTTGACTCGTGAAGTCCATGAGTCTGACGATGATGACTCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTCTTAGGAGTGATATTAAGATCGGTATCACTCATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTAGGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCATAAGAGAATTT] [+] EMBL BG932599 [ gAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTATCT ] consensusID : consensus_10891#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [ATTGGGCCGGCCCGGGCTGGTTATCGGTAGTACAAGTGGTATTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTGGGGTGCCATATTCGACAAAAGCGATGTCTTCAGTTGACGTCTCAGCACAACTAAAACTGGGTTGGCCAGTTTTCATTAACATTGAGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGTTTTGTATCAACAGTCTGGGTTTGCATTTCAATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGT] [+] EMBL CD200789 [ATTGGGCCGGCCCGGGCTGGTTATCGGTAGTACAAGTGGTATTTTTTTCAATTCATCTTCATCGGTTAAATCTGTTGGGGTGCCATATTCGACAAAAGCGATGTCTTCAGTTGACGTCTCAGCACAACTAAAACTGGGTTGGCCAGTTTTCATTAACATTGAGATCATCTTCAATTTCACCTACAGGCACCATATCATCATCGTCGTCGTCATCGTCATCATCACTTTCAACTGGTTTTGTATCAACAGTCTGGGTTTGCATTTCAATCCCAAGAGATGTTTTATCATTTTTATTACTTGATTCTGTTATAGTTGGAAAATTATCTGTTTGCACAGCAACACCATGTTGGGATAAATTCTCGTATGTTGTTGCATTCGCTTGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10891#1 ------------------------------------------------------------ consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 ACGCAGTACGGTAATGCAGCTGCATGGCATGTTGTTTTTTTTTTTTTTTTTTTTTTTTTG 60 consensus_10891#1 -----------------------------------GCATTTAGGTGTAAGTATGGGTGTA 25 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 ACACATGATAGAAAATTTATTTCCACAATCAGTTTATACAGGTGAAAAAATTAGGCAAAA 120 consensus_10891#1 AGAGTTTGACGGGACCGCTTAGTTGGGGGTGGCGGCGGAAGCGATTGATCTATCCCTCTT 85 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 AATGATATAAAGAACGATAGGATTAAAAAAGACAGACAAATGTGCATATATGTTCACTAT 180 consensus_10891#1 CCACTACTGGAGTGACTCATTACCGATGTCATCGGTTGATGATGGTGAAATGGTGGATTA 145 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 TTTATAGTCATATGAAAAGGGAGAATAGGGGGGAATCGTTGATAGGTTGGTATGAGAGAA 240 consensus_10891#1 TGTTCAGTGGATTGTTGTGTGGCAGTTGACTCGGAAGTCCATGAGTCTGACGATGATGAC 205 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 ACAATTTAATTAAAATCATTTTGAATCCGGTTTTATATAAATGAGCTTAGAAGCCCCCAT 300 consensus_10891#1 TCTTCTGGGGCAGGACGTTTAAGATTAGATACATTCCGAGATTTGCCAGGAGCATCACTA 265 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 CTGGTTGACTGTTCATAAATGCTTCTTGAATTTCTTTCACCATTTTAATCCTATTAAGTA 360 consensus_10891#1 GGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTCATTTGATATTGATGTACATGGATAA 325 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 TTACTTGCAATTCAGTTGGTCGAACGGGATTGGTTGAAAACCACAAATCAGATTGTGGGG 420 consensus_10891#1 TCAATTGACTGTGCTGAAAGTTCTGAGTCACAAACCTGTGTATCGGCTTGGTTATCATTA 385 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 GGTATAGTGGATTCAAGTAGAACACACTATCAGAATCTAGTAGTTCTGGGGGACAACGGG 480 consensus_10891#1 TCTCCTGCCGTTACTGATGAATCATGTACACTGAATTTAACGGAAGAATCAATCAGTGTT 445 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 CGAAGTATGCTTTGTAAAGTTTAACAGGACATCGCTGTGGATGTTGAGGATTTGCATCTA 540 consensus_10891#1 TTAGGAGTGATTAAGTCAACTTGTTGTCCTTGGTCTTCAACAAGCGGAGTTTCTGGAGTA 505 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 AACTTAATGTTGTGATAGAATCATCTGATTCACCAAACATATTACCAGGTAAATGACAGA 600 consensus_10891#1 GCATCAAAGACAAGTGGAATTGGAACTGGGCATGGTAACGGATAGGGGATTGCGTATGGC 565 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 GAACAGCTGTTTCAGAGATTTGAAATTGTGAGAATGCTAACTGTCGATGAACGGTACCAA 660 consensus_10891#1 ACTGGTCTTGCGTATAAACATACTGGAAAGGGCACATAG-ATTGGAACCGGGAT-AGGTA 623 consensus_10891#3 -----------------------------------ATTG-GGCCGGCCCGGGCT-GGTTA 23 consensus_10891#2 ---------------------------ATTGTTGTGTGGCAGTTGACTCGTGAA-GTCCA 32 consensus_10891#0 GTCGTAAACCAATATGTTTGGTATTGTAATAGAGCATAGTGAATAATAAAATCTCAGCTG 720 * * consensus_10891#1 TCGGTAGTACAAGTGGTATTTTTTTCAATTCATCTTCATCGGTTA-A-ATCTGTTTGGGT 681 consensus_10891#3 TCGGTAGTACAAGTGGTATTTTTTTCAATTCATCTTCATCGGTTA-A-ATCTGTTGGGGT 81 consensus_10891#2 TGAGTCTGACGA-TGATGACTCTTCTGGGGCA----GGACGTTTA-AGATTAGATACATT 86 consensus_10891#0 ATTGTGAACCTAATTGTTTTGCATCCCATAAATGTTCTTCTTCTATACGGCAGATAAGAA 780 ** * * * * * * * ** * * * consensus_10891#1 GCCATATTCGACAAAAGCGATGTCAT-CAGTTGACGTCTCAGCACAACTAAAACTTGGTT 740 consensus_10891#3 GCCATATTCGACAAAAGCGATGTCTT-CAGTTGACGTCTCAGCACAACTAAAACTGGGTT 140 consensus_10891#2 CCGAGATTTGCCAGGAGCATCACTAGGCTCTTCAACTGTCTCGACATCTCCTTCTCCGTC 146 consensus_10891#0 GACCTTCAGGACTGATACGTGGTTGGAAATTGGCTAATATTTCATTCAAAGCTCTAGATA 840 * * * * * ** * consensus_10891#1 GGTCAGTTTTCATTA-ACATTT-GATCATCTTCAATTTCACCTACAGGCACCATATCATC 798 consensus_10891#3 GGCCAGTTTTCATTA-ACATTGAGATCATCTTCAATTTCACCTACAGGCACCATATCATC 199 consensus_10891#2 ATTTGATATTGATGT-ACATGG--ATAATCAATTGACTGTGCTGAAAGTTCTGAGTCACA 203 consensus_10891#0 GGCTAGTAAACGCGGGATCTCCAAATAAGTTTACAGTACGACCATTTTCGTTGAGATACT 900 * * * ** * * * consensus_10891#1 ATC------GTCGTCGTCATCGTCATCATCACTTTCAACTGGTTTTGTATCA-ACAGT-C 850 consensus_10891#3 ATC------GTCGTCGTCATCGTCATCATCACTTTCAACTGGTTTTGTATCA-ACAGT-C 251 consensus_10891#2 AACCTGTGTATCGGCTTGGTTATCATTATCTCCTGCCGTTACTGATGAATCATGTACA-C 262 consensus_10891#0 CTT------GAATACCTAGACACAAATAGAAAATTGAATCAGCTACATAACATTCATTAT 954 * * * * * * ** * consensus_10891#1 TGGGTTTGCATTTCGATCCCAAGAGATGTTTTATCATTTTTATTAC--TTGAT-TCTGTT 907 consensus_10891#3 TGGGTTTGCATTTCAATCCCAAGAGATGTTTTATCATTTTTATTAC--TTGAT-TCTGTT 308 consensus_10891#2 TGAATTTA-ACGGAAGAATCAATCAGTGTCTTAGGAGTGATATTAAGATCGGTATCACTC 321 consensus_10891#0 TTGGTTTGCGAACTTCACGAACAAATTGACTTAGTG-CGATATTAAGATCGGTATCACTC 1013 * *** * ** *** ***** * * * ** * consensus_10891#1 ATAGTTGGAAAATTATC-------TGTTTGCACAGCAACACCAT-GTTGGGATAAATTCT 959 consensus_10891#3 ATAGTTGGAAAATTATC-------TGTTTGCACAGCAACACCAT-GTTGGGATAAATTCT 360 consensus_10891#2 ATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTA 381 consensus_10891#0 ATATTTAATAAATCAGCATATAAATGTGAATATTGTTGCATTGCAGCTGCATTAGATCTA 1073 *** ** **** * * *** * * ** * ** ** ** consensus_10891#1 CGTATGTTGTTGCATTCGCTTGAGTTTTACGACACATAGATAATGGTCGACATAACACAG 1019 consensus_10891#3 CGTATGTTGTTGCATTCGCTTGAGT----------------------------------- 385 consensus_10891#2 GGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCA 441 consensus_10891#0 GGCTTGTCTGTAGATGAAGCTGATTTTTGCTGTACCCAGTGACGCCACGCATTGATCCCC 1133 * *** * ** *** * consensus_10891#1 CTTTGTTGCGCATGGCAACTGGGGCCGCTGGTTGTAAAATGACTTGTTGTTCAATGCCCA 1079 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 TAAGAGAATTT------------------------------------------------- 452 consensus_10891#0 ATAGAGAATTTCAAATGGTAATTAGCATCAGATGTAAGTATGGGTGTAAGAGTTTGACGG 1193 consensus_10891#1 ATTGTCGAACCATGTCAATTGGAACAACAGGAAACTGACCTCTCAACGGCCTTCGACCTC 1139 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 GACCGCTTAGTTGGGGGGTGCGGCGGAAGCGATTGATCTATCTCTCTTCACTACTGTATT 1253 consensus_10891#1 GAGGGCGACCTCGACCACTAGTACCAGCTATTGCAGCGGCTAAACGATAACCAGAGTCTC 1199 consensus_10891#3 ------------------------------------------------------------ consensus_10891#2 ------------------------------------------------------------ consensus_10891#0 GACTCATTACCGAT---------------------------------------------- 1267 consensus_10891#1 GGTCCAC 1206 consensus_10891#3 ------- consensus_10891#2 ------- consensus_10891#0 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||