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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1097 fasta sequence
[GGTTGATAGTTCTCATTATTGAAATAACCATAATGTTAATCAGTTACATAGATGCATATGAATGTANAATGAAGGATAGTTAAGATTAGTATCCAATTCATCAAAAATGTAATCAAAGTTTATCGTTCGACTAAGTAATAGAATAAGGATAAGATCTGATTTTCCAGGTTTAATAATAGTCAAAACGTGTTATAGCTTGAATGTAGTTGTTAGGAAACAGGTACTAGGTAAGGATGGCTAATCGATTGATGAAGTAATGAAACTTCATCAGTTGAGATGGTTAGGACACGTGCTACGTATACCCGACCACCGACTGCCCCAACGAGAGATGTTTTATGGTGTAGAGGAGTAGGTTGGAAGAAAGCTAAAGGTGGCCAGACCAAAACGTGGCTCACATACATGAAGCCATCGACAAGTGGTCTGAGCCACGCTGGTAGGTGTAGATTACCTGGTTGGGATCCGCGAGATGATAGCAATCGATGGTTAGAGACCTTGAATGACATGGCTCAAGATCGTTTGCAACAGCGAAGGTACATCCAGTCTTTGTGTTCTGCCAAAGTCTAATCTTCTAAATTCTACATGTCCCTATCCTTTTTCTCTTTCCAAATCTATTTCACTGTATTATACTCTAATCTTTCTATCTACTTATCAGCTACATTTGTTAAATATTTCATCATTCTACGTTATTTTGTTTCTCCTCTCAGAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGTGTTTTACCTATGGTGTGACCGATACTGTTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCCCCCGATTTTTTGTTTATTATTAGTAGTGCTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTG]
[-] EMBL CD146554 [GGTTGATAGTTCTCATTATTGAAATAACCATAATGTTAATCAGTTACATAGATGCATATGAATGTANAATGAAGGATAGTTAAGATTAGTATCCAATTCATCAAAAATGTAATCAAAGTTTATCGTTCGACTAAGTAATAGAATAAGGATAAGATCTGATTTTCCAGGTTTAATAATAGTCAAAACGTGTTATAGCTTGAATGTAGTTGTTAGGAAACAGGTACTAGGTAAGGATGGCTAATCGATTGATGAAGTAATGAAACTTCATCAGTTGAGATGGTTAGGACACGTGCTACGTATACCCGACCACCGACTGCCCCAACGAGAGATGTTTTATGGTGTAGAGGAGTAGGTTGGAAGAAAGCTAAAGGTGGCCAGACCAAAACGTGGCTCACATACATGAAGCCATCGACAAGTGGTCTGAGCCACGCTGGTAGGTGTAGATTACCTGGTTGGGATCCGCGAGATGATAGCAATCGATGGTTAGAGACCTTGAATGACATGGCTCAAGATCGTTTGCAACAGCGAAGGTA ]
[+] EMBL CD127789 [ aGGTAGGTGTAGACTACCTGGTTGGGATTCGCGAGATGATAGCAACCGATGGTTAGAGACCTTGAATGACATGGCTCAAAATCGTTTGCAATGGCGAAGGTGCATCCAGTCTTTGTGTTCTGCCAAAGTCTAATCTTCTAAATTCTACATGTCCCTATCCTTTTTCTCTTTCCAAATCTATTTCACTGTATTATACTCTAATCTTTCTATCTACTTATCAGCTACATTTGTTAAATATTTCATCATTCTACGTTATTTTGTTTCTCCTCTCAGAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGC ]
[+] EMBL CD186427 [ gtcgaAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATNGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGTGTTTTACCTATGGTGTGACCGATACTGTTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCCCCCGATTTTTTGTTTATTATTAGTAGTGCTACTACTGATGGATTCAATCAGT ]
[+] EMBL CD159319 [ GCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTT TACTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACC AATTTT ACTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTG]
consensusID : consensus_10893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 834 fasta sequence
[AAAGCCACTTATTATGACAGTGATTATTGTTCTTCATCTTTACTAGAACTTTAACTTCAATCTTTCATGGCAGTAAAAACATAACACTGTTAAGATGTATGAGACTGTGAAGTTACTATACAATATGATTTTCCATGATTCTCTATTACGGGAACTATTGTTTAATTGTAAAGTCCTTTGTCCAATTCTAAACAAATTCATTTAAATGGTTTTATTATAAAAGACAATTTTTGTTACGTAAGTTTAATTTGCTTTTATAAATGTACTTACTTGCTTACTTACGCCAGTTACTCCCAACGAAGCACAGGCCTCCGACTAGCATTCTCCAACACACTCTGTCCTGGGTCTTCCTTTCTAGTTCTATCCAATTTTTGTTCATTCTTCTCATGTTTGTCTCCATTTCTCGACGTATTGTGTTCTTTGGTCTTCCTCTTCTCCTTCGGCCTTCAGGATTCCATGTGAGGGCTTGCCTTGTGACGCAGTTGGGTGATTTCCTCAATATGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACCGGATGGAATCTCGTTTGTCCTCTCCCACAGTAAGTTGTTGTTAGTATCTGGCCAACAGATCTGAAGTATTTTGAGTAAACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCCTTCTCAGTTCTCCACGTCTATGCGCCATACAGTAGGACTGTCTTGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGACAATTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTGCTCTCGCTTTGCCGATCCGCGTCTTCATATCTTCATCAGAG]
[+] EMBL CD084483 [AAAGCCACTTATTATGACAGTGATTATTGTTCTTCATCTTTACTAGAACTTTAACTTCAATCTTTCATGGCAGTAAAAACATAACACTGTTAAGATGTATGAGACTGTGAAGTTACTATACAATATGATTTTCCATGATTCTCTATTACGGGAACTATTGTTTAATTGTAAAGTCCTTTGTCCAATTCTAAACAAATTCATTTAAATGGTTTTATTATAAAAGACAATTTTTGTTACGTAAGTTTAATTTGCTTTTATAAATGTACTTACTTGCTTACTTACGCCAGTTACTCCCAACGAAGCACAGGCCTCCGACTAGCATTCTCCAACACACTCTGTCCTGGGTCTTCCTTTCTAGTTCTATCCAATTTTTGTTCATTCTTCTCATGTTTGTCTCCATTTCTCG ]
[+] EMBL CD190225 [ TCTAGTTCTATCCAATTGTTGTTCATTCTTCTCATGTCTGTCCCCATTTCTCAACGTATTGTGTTCTTTGGTCTTCCTCTTCTCCTTCGGCCTTCAGGATTCCATGTGAGGGCTTGCCTTGTGACGCAGTTGGGTGATTTCCTCAATATGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACCGGATGGAATCTCGTTTGTCCTCTCCCACAGTAAGTTGTTGTTAGTATCTGGCCAACAGATCTGAAGTATTTTGAGTAAACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCCT ]
[+] EMBL CD068941 [ TCTTTGGTCTTCCTCTTCTGCTTCGGCCTTCAGGATTCCATGTGAGGGCTTGCCTTGTGACGCAGTTAACTGCTTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCcaat ]
[-] EMBL BG931145 [ TCCGAAGCATTTTGCGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCATTCTCAGTTCTCCACGTCTATGCGCCATACAGTAGGACTGTCTTGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGACAATTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTGCTCTCGCTTTGCCGATCCGCGTCTTCATATCTTCATCAGAG]
consensusID : consensus_10893#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 771 fasta sequence
[AAAGTTGGATAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTTGATGGCCTATGCCTCATTGTGAGTAACAGGCGTAATGCAATTTTCTACTAACTGGGATATCACAAAAGTATATTTGTTATTTACTTTTTACCTTTGTTAGGTCGGCCTCCAGAGAACTCCAACAGAGCCTCCAGAGGCTCAAAAAGAGCTCCAACCAATCAGAGCACGACAGAACATTCTGGAGTTCCAACGTGGCACGCTATCATTGGTCAGTAGCAATTTATGTCGTTAAGTGGATTGGCTGAATTAGGATGTTGATTTAACTTAA-GCAAACATCTATAAATACCTACGA-TTTTCTGTACAAAGATGAACC-TTGCAATAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCGCTGAGTAGTGCTAGTCTTGGGGTTATCGGAATAGCTAGGATCCGAATAAGGCGTTCAACCTACGAGACATAACAAATTGGCGGCGGGGTTAGCTTATCAAGATGTCATTTACCTTTGAACAATTTGAAGCCTTGCTGGAGCGTCGAGAAAAACGATTTGAGCAGTTCCAGGTTCGTATCATAGAGACTTTAACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGATGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGATGGTTCGTCAGGTATTACTTTCGAAACCTGGTTCAAGAAATATGAAGATTTATTCA]
[+] EMBL CD182474 [AAAGTTGGATAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTTGATGGCCTATGCCTCATTGTGAGTAACAGGCGTAATGCAATTTTCTACTAACTGGGATATCACAAAAGTATATTTGTTATTTACTTTTTACCTTTGTTAGGTCGGCCTCCAGAGAACTCCAACAGAGCCTCCAGAGGCTCAAAAAGAGCTCCAACCAATCAGAGCACGACAGAACATTCTGGAGTTCCAACGTGGCACGCTATCATTGGTCAGTAGCAATTTATGTCGTTAAGTGGATTGACTGAATTAGGATGTTGATTTAACTTAA GCAAACATCTATAAATACCTACGA TTNTCTGTACAAAGATGAACC TTGC ATANAGCATCTTCTn ]
[+] EMBL CD182640 [AAAGTTGGATAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTTGATGGCCTATGCCTCATTGTGAGTAACAGGCGTAATGCAATTTTCTACTAACTGGGATATCACAAAAGTATATTTGTTATTTACTTTTTACCTTTGTTAGGTCGGCCTCCAGAGAACTCCAACAGAGCCTCCAGAGGCTCAAAAAGAGCTCCAACCAATCAGAGCACGACAGAACATTCTGGAGTTCCAACGTGGCACGCTATCATTGGTCAGTAGCAATTTATGTCGTTAAGTGGATTGACTGAATTAGGATGTTGATTTAACTTAANGC AACATCTATAANTACCTACGANTTTTCTGTAC AAGATGAACCTTTGC AT AAGCATCTTtc ]
[+] EMBL CD085532 [ TCCTTAAGCGGATTGGCTGAATTAGGATGTTGATTTAACTTAA GCAAACATCTATAAATACCTACGA TTTTCTGTACAAAGATGAACC TTGCACTAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCGCTGAGTAGTGCTAGTCTTGGGGTTATCGGAATAGCTAGGATCCGAATAAGGCGTTCAACCTACGAGACATAACAAATTGGCGGCGGGGTTAGCTTATCAAGATGTCATTTACCTTTGAACAATTTGAAGCCTTGCTGGAGCGTCGAGAAAAACGATTTGAGCAGTTCCAGGTTCGTATCATAGAGACTTTAACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGATGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGATGGTTCGTCAGGTATTACTTTCGAAACCTGGTTCAAGAAATATCAAGATTTATTCA]
[+] EMBL CD085599 [ TCGTTAAGTGGATTGGCTGAATTAGGATGTTGATTTAACTTAA GCAAACATCTATAAATACCTACGA TTTTCTGTACAAAGATGAACC TTGCAATAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCGCTGAGTAGTGCTAGTCTTGGGGTTATCGGAATAGCTAGGATCCGAATAAGGCGTTCAACCTACGAGACATAACAAATTGGCGGCGGGGTTAGCTTATCAAGACTTCATTTACCTTTGAACAATTTGAAGCCTTGCTGGAGCGTCGAGAAAAACGATTTGAGCAGTTCCAGGTTCGTATCATAGAGACTTCAACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGATGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGATGGTTCGTCAGGTATTACTTTCGAAACCTGGTTCAAGAAATATGAAGATTTATTC ]
[+] EMBL CD085561 [ TCGTTAAGTGGATTGGCTGAATTAGGATGTTGATTTAACTTAA GCAAACATCTATAAATACCTACGA TTTTCTGTACAAAGATGAACC TTGCAATAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCGCTGAGTAGTGCTAGTCTTGGGGTTATCGGAATAGCTAGGATCCGAATAAGGCGTTCAACCTACGAGACATAACAAATTGGCGGCGGGGTTAGCTTATCAGGATGTCATTTGCCTTTGAACAATTTGAAGCCTTGCTGGAGCGTCGAGAAAAACGATTTGAGCAGTTCCAGGTTCGTATCATAGAGACTTTAACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGATGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGATGGTTCGTCTGGTATTACTTTCGAAACCTGGTTCAAGAAATATGAAGATTTATTC ]
consensusID : consensus_10893#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 556 fasta sequence
[CACTTCGCGACAGACAGTCCATTG-AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG-AAAAGTCGCAATGCATCCCGTGGAATGACTGA-AGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG-GAAAATGCAGCGCTCACT-TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGAATATGGAGCGCGCGGTGATAGAAATGAATCAAATGGTTATAGAAGCAATGGGTTTGGGTCGTATCGTGGAAGAGGCAGGGGTCGCGACGGGCCCAGGGTTGGTGGTGATTTCTCAAGGAGATTTGAAGAACGCAATCCACGCGAAGT]
[+] EMBL CD157836 [CACTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGA AGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAGGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGA ]
[+] EMBL CD157891 [CACTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGA AGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGA ]
[+] EMBL CD157867 [ ACTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGA ATATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCACTACTGGCTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGAATATGGAGCGCGCGGTGATAGAAATGAATCAAATGGTTATAGAAGCAATGGGTTTGGGTCGTATCGTGGAAGAGGCAGGGGTCGCGACGGGCCCAGGGTTGGTGGTGATTTCTCAAGGAGATTTGAAGAACGCAATCCACGCGAAGT]
[+] EMBL CD157827 [ ACTTCGCGACAAACAGTCCATTGNAACCGCTGTTTTTGAAGTCCTGCGAC AGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGGNAAAAGTCGCAATGCATCCCGTGGAATGACTGA TGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCCTCAAACAGCAATTTCGAGAAATAACCCTGGNGAAAATGCAGCGCTCACTNTC GGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAGGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACNGAAGGCCGGTCAAGGGCAGGGCTCATGCTGCGGATCGTCCTTATGGGCGAAGCCCCCTGGA ]
[+] EMBL CD157863 [ cCTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGATTTATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCATGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGA ]
[+] EMBL CD157895 [ CTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGA TGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGA ]
consensusID : consensus_10893#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[TTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTGCTCTTGCTTTGCCAATCCACGCCTTCACATCTGCATCAGATCTACTGTGTTCATCAATGATGCTACCCAGATATGTAAAGGTTTTCACATCCTCCGAACCTTCTCCATCAAGTGTAATTCGATTGATGCATGTTGTGTTGTGTCGGAGGATCTTGGTTTTCCTTTTTTTATATTGAGACCTACTGCTGCTGAGGCTAATACTACACCGGTCGTCTTCTCCTGCATTTGTTGTTGCGTGTGAGATAGAAGAGCCAGATCATCCGCGGAGTCTAAATCATCCAGCTCGATCCTAGCTGTCCATTGTATCCCGTGCTTCCACAGCCTCAGATGTTGACGTCTTCATAATCCAGTCGATCACCAGGAGAAAGAGAAAGGGTGAGAGTAAGCAAACTTGGCTG]
[+] EMBL CD121466 [TTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTGCTCTTGCTTTGCCAATCCACGCCTTCACATCTGCATCAGATCTACTGTGTTCATCAATGATGCTACCCAGATATGTAAAGGTTTTCACATCCTCCGAACCTTCTCCATCAAGTGTAATTCGATTGATGCATGTTGTGTTGTGTCGGAGGATCTTGGTTTTCCTTTTTTTATATTGAGACCTACTGCTGCTGAGGCTAATACTACACCGGTCGTCTTCTCCTGCATTTGTTGTTGCGTGTGAGATAGAAGAGCCAGATCATCCGCGGAGTCTAAATCATCCAGCTCGATCCTAGCTGTCCATTGTATCCCGTGCTTCCACAGCCTCAGATGTTGACGTCTTCATAATCCAGTCGATCACCAGGAGAAAGAGAAAGGGTGAGAGTAAGCAAACTTGGCTG]
consensusID : consensus_10893#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 373 fasta sequence
[CAGGGTTTTACCTATG-GTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCA-GTGCCACCACCAATTTTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTGATGG-ATTCAATCAGTCGA-AATCTTCCCTCAATGTGGCAGTGAGTGCAA-CAACTCCCGTGGGTTCAACATTTAATCAGGGTTTTA]
[+] EMBL CD170808 [CAGGGTTTTACCTATG GTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCA GTGCCACCACCAATTTTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTCGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATAGTGGTCCTGATGTTTCTACTAATTCTAGTATTACTGGCAGTGCCAACACCAATTTTACTACTACTACTACTACTACTACTGGTGGTATTCAATCAGTCGAGAGTCTTCCCTCAATGTGGCAGTGAGTGCAA CAACTCCCGTGGGTTCAACATTTAATCAGGGTTTT ]
[-] EMBL CD170970 [ AGGGTTTTACCTATGTGTGTGACCGATACTGCTCCTGATGCTTCTACTCATTCTACTATTACGGCCACGTGCCACCACCCATTTTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCGTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTGATGG ATTCAATCAGTCGA AATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAA TCCCGTTGGTTCAACATTTAATCAGGGTTTTA]
[-] EMBL CD159212 [ cgACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTGATGG ATTCAATCAGTCGA AATCTTCCCTCAATGTGG ]
consensusID : consensus_10893#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[TACCTGGGGCTGATGGTCTGGTATTGATTCGTATGTTGCGCGGCTGCCTCTCGAATCGACTGGGAAACAGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACAT]
[+] EMBL CD068066 [TACCTGGGGCTGATGGTCTGGTATTGATTCGTATGTTGCGCGGCTGCCTCTCGAATCGACTGGGAAACAGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10893#0 GGTTGATAGTTCTCATTATTGAAATAACCATAATGTTAATCAGTTACATAGATGCATATG 60
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 AATGTANAATGAAGGATAGTTAAGATTAGTATCCAATTCATCAAAAATGTAATCAAAGTT 120
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 TATCGTTCGACTAAGTAATAGAATAAGGATAAGATCTGATTTTCCAGGTTTAATAATAGT 180
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 CAAAACGTGTTATAGCTTGAATGTAGTTGTTAGGAAACAGGTACTAGGTAAGGATGGCTA 240
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 ATCGATTGATGAAGTAATGAAACTTCATCAGTTGAGATGGTTAGGACACGTGCTACGTAT 300
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 ACCCGACCACCGACTGCCCCAACGAGAGATGTTTTATGGTGTAGAGGAGTAGGTTGGAAG 360
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 -------------------------------------AAAGCCACTTATTATGACAGTGA 23
consensus_10893#2 ------------------------------------------------------------
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 AAAGCTAAAGGTGGCCAGACCAAAACGTGGCTCACATACATGAAGCCATCGACAAGTGGT 420
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 TTATTGTTCTTCATCTTTACTAGAACTTTAACTTCAATCTTTCATGGCAGTAAAAACATA 83
consensus_10893#2 --------------------------------------------AAAGTTGGATAGAACT 16
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 CTGAGCCACGCTGGTAGGTGTAGATTACCTGGTTGGGATCCGCGAGATGATAGCAATCGA 480
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 ACACTGTTAAGATGTATGAGACTGTGAAGTTACTATACAATATGATTTTCCATGATTCTC 143
consensus_10893#2 AGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTTGATGGCCTATGCCTCAT 76
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 TGGTTAGAGACCTTGAATGACATGGCTCAAGATCGTTTGCAACAGCGAAGGTACATCCAG 540
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 TATTACGGGAACTATTGTTTAATTGTAAAGTCCTTTGTCCAATTCTAAACAAATTCATTT 203
consensus_10893#2 TGTGAGTAACAGGCGTAATGCAATTTTCTACTAACTGGGATATCACAAAAGTATATTTGT 136
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 TCTTTGTGTTCTGCCAAAGTCTAATCTTCTAAATTCTACATGTCCCTATCCTTTTTCTCT 600
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 AAATGGTTTTATTATAAAAGACAAT-TTTTGTTACGTAAGTTTAATTTGCTTTTATAAAT 262
consensus_10893#2 TATTTACTTTTTACCTTTGTTAGGTCGGCCTCCAGAGAACTCCAACAGAGCCTCCAGAGG 196
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 ------------------------------------------------------------
consensus_10893#0 TTCCAAATCTATTTCACTGTATTATACTCTAATCTTTCTATCTACTTATCAGCTACATTT 660
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 GTACTTACTTGCTTACTTACGCCAGTTACTCCCAACGAAGCACAGGCCTCCGACTAGCAT 322
consensus_10893#2 CTCAAAAAGAGCTCCAACCAATCAGAGCACGACAGAACATTCTGGAGTTCCAACGTGGCA 256
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 -----------------------CACTTCGCGACAGACAGTCCATTGAACCGCTGTTTTT 37
consensus_10893#0 GTTAAATATTTCATCATTCTACGTTATTTTGTTTCTCCTCTCA-GAATCTTCCCTCAATG 719
consensus_10893#5 ------------------------------------------------------------
consensus_10893#4 ------------------------------------------------------------
consensus_10893#1 TCTCCAACACACTCTGTCCTGGGTCTTCCTTTCTAGTTCTATC-CAATTTTTGTTCATTC 381
consensus_10893#2 CGCTATCATTGGTCAGTAGCAATTTATGTCGTTAAGTGGATTGGCTGAATTAGGATGTTG 316
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 GAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGGAA 97
consensus_10893#0 TGGCAGTGAGTGCAAGCAATCCCGTTGG--TTCAACATTTAATCAGGGTTTTACCTATGG 777
consensus_10893#5 -------------------------------------------CAGGGTTTTACCTATGG 17
consensus_10893#4 ---------TTGTTTTGAGTTCCAGATG--TTCTTCAGTTG-TAAATATGCTGCTCTTGC 48
consensus_10893#1 TTCTCATGTTTGTCTCCATTTCTCGACG--TATTGT-GTTCTTTGGTCTTCCTCTTCTCC 438
consensus_10893#2 ATTTAACTTAAGCAAACATCTATAAATACCTACGATTTTCTGTACAAAGATGAACCTTGC 376
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 AAGTCGCAATGCATCCCGTGGAATGACTGAAGATAGGGTTAGAGGAGTAGTCAAATGGTT 157
consensus_10893#0 TGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCA--GTGCCACC 835
consensus_10893#5 TGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCA--GTGCCACC 75
consensus_10893#4 TTTG-CCAATCCACGCCTTCACATCTGCATCAGATCTACTGTGTTCATCA--ATGATGCT 105
consensus_10893#1 TTCGGCC--TTCAGGATTCCATGTGAGGGCTTGCCTTGTGACGCAGTTGG--GTGATTTC 494
consensus_10893#2 AATAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCG--CTGAGTAG 434
consensus_10893#6 ------------TACCTGGGGCTGATGGTCTGGTATTGATTCGTATGTTGC-GCGGCTGC 47
consensus_10893#3 TAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGT 217
*
consensus_10893#0 ACC-AATTTTAC---TACTACTACTACTACTACTACTACTACTGATGGATTCAATCAG-- 889
consensus_10893#5 ACC-AATTTTAC---TACTACTACTACTACTAC---------TGATGGATTCAATCAG-- 120
consensus_10893#4 ACCCAGATATGT---AAAGGTTTTCACATCCTC--------CGAACCTTCTCCATCAA-- 152
consensus_10893#1 CTCAATATGTGTCCTATCCACTTCCAGTGCTTCTTC--CTGATTTCTTCCTCCACCGG-- 550
consensus_10893#2 TGCTAGTCTTGG---GGTTATCGGAATAGCTAGGATC-CGAATAAGGCGTTCAACCTA-- 488
consensus_10893#6 CTCTCGAATCGACTGGGAAACAGTTACTTGTAA----------CTTTTTATTTATTAA-- 95
consensus_10893#3 GCATCAAACAGCAATTTCGAGAAATAACCCTGGGAAAATGCAGCGCTCACTTCAGGAAAA 277
* * *
consensus_10893#0 TCGAAAT-CT---TCCCTCAATGTGGCAGTGAGTG--CAAGCAATCCCGTTGGTTCAACA 943
consensus_10893#5 TCGAAAT-CT---TCCCTCAATGTGGCAGTGAGTG--CAAGCAATCCCGTTGGTTCAACA 174
consensus_10893#4 GTGTAAT-TCGA-TTGATGCATGTTGTGTTGTGT---CGGAGGATCTTGGTTTTCCTTTT 207
consensus_10893#1 ATGGAATCTCGT-TTGTCCTCTCCCACAGTAAGTTGTTGTTAGTATCTGGCCAACAGATC 609
consensus_10893#2 -CGAGAC-ATAA-CAAATTGGCGGCGGGGTTAGCT--TATCAAGAT---GTCATTTACCT 540
consensus_10893#6 TTGTGTAGTCG--TTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAA 153
consensus_10893#3 TGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTAC 337
consensus_10893#0 TT---TAATCAGTG--TTTTACCTATGGTGTG-ACCGATACTGTTCCTGATGT-TTCTAC 996
consensus_10893#5 TT---TAATCAGGG--TTTTACCTATGGTGTG-ACCGATACTGCTCCTGATGT-TTCTAC 227
consensus_10893#4 TT---TATATTGAG--ACCTACTGCTGCTGAG-GCTAATACTACACCGGTCGTCTTCTCC 261
consensus_10893#1 TGAAGTATTTTGAGTAAACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCCTTC 669
consensus_10893#2 TTGAACAATTTGAA-GCCTTGCTGGAGCGTCG-AGAAAAACGATTTGAGCAGTTCCAGGT 598
consensus_10893#6 CT-AAAAGTTTGAGTTTCTTGCTGACGGCATA-----ATACG--TCGAATTGC--GCGTT 203
consensus_10893#3 TGGGCCTGACAGAA--GGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGG 395
*
consensus_10893#0 TAATTCTACTAT---TAC----TGCCAG-TGCCACCCCCCGATTTTTTGTTTATTATTAG 1048
consensus_10893#5 TAATTCTACTAT---TAC----TGCCAG-TGCCACCACC-AATTTTAC---TACTACTAC 275
consensus_10893#4 TGCATTTGTTGT---TGCG---TGTGAGATAGAAGAGCCAGATCATCCGCGGAGTCTAAA 315
consensus_10893#1 TCAGTTCTCCACGTCTATG---CGCCATACAGTAGGACTGTCTTGACATTTGTATTGAAA 726
consensus_10893#2 TCGTATCATAGAGACTTTA---ACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGA 655
consensus_10893#6 TGCATCCCGAA----TATT---CACTACATGTTTATCTTTTATCACACATTGTATTTCAA 256
consensus_10893#3 CGAAGCCCCAGGGAATATGGAGCGCGCGGTGATAGAAATGAATCAAATG-GTTATAGAAG 454
* * *
consensus_10893#0 TAGTGCTACTA---CTGA-TGGATTCAATCAGTCGAAATCTTCC-----CTCA-ATGTG- 1097
consensus_10893#5 TACTACTACTA---CTGA-TGGATTCAATCAGTCGAAATCTTCC-----CTCA-ATGTGG 325
consensus_10893#4 TCATCCAGCTCGATCCTA-GCTGTCCATTGTATCCCGTGCTTCCACAGCCTCAGATGTTG 374
consensus_10893#1 ATTCTGATCTTGGTGTTG-GTTGACAATTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAA 785
consensus_10893#2 TGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGA 715
consensus_10893#6 CATTTCTACAT------------------------------------------------- 267
consensus_10893#3 CAATGGGTTTGGGTCGTATCGTGGAAGAGGCAGGGGTCGCGACGGGCCCAGGGTTGGTGG 514
consensus_10893#0 ------------------------------------------------------------
consensus_10893#5 CAGTGAGTGCAACAACTCCCGTGGGTTCAACATTTAATCAGGGTTTTA------------ 373
consensus_10893#4 ACGTCTTCATAATCCAGTCGATCACCAGGAGAAAGAGAAAGGGTGAGAGTAAGCAAACTT 434
consensus_10893#1 ATATGCTGCTCTCGCTTTGCCGATCCGCGTCTTCATATCTTCATCAGAG----------- 834
consensus_10893#2 TGGTTCGTCAGGTATTACTTTCGAAACCTGGTTCAAGAAATATGAAGATTTATTCA---- 771
consensus_10893#6 ------------------------------------------------------------
consensus_10893#3 TGATTTCTCAAGGAGATTTGAAGAACGCAATCCACGCGAAGT------------------ 556
consensus_10893#0 -----
consensus_10893#5 -----
consensus_10893#4 GGCTG 439
consensus_10893#1 -----
consensus_10893#2 -----
consensus_10893#6 -----
consensus_10893#3 -----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||