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Schistosoma mansoni
cluster # 10895 cluster # 10895       Sequences # 24       consensus # 8


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10895#0 length = 557 sequences # 15  
consensus_10895#1 length = 441 sequences # 1  
consensus_10895#2 length = 370 sequences # 1  
consensus_10895#3 length = 355 sequences # 2  
consensus_10895#4 length = 344 sequences # 1  
consensus_10895#5 length = 256 sequences # 2  
consensus_10895#6 length = 159 sequences # 1  
consensus_10895#7 length = 128 sequences # 1  

consensusID : consensus_10895#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 557
fasta sequence
                              [AATTTTTATTTCTTATAAATCAAAGGCATAAAATTGAGAAGAAAAATTTAAAACGTAAGCAGAAACCAAAAACATAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTG-ATATCTGGTTAGTGACTTTATTTATCGAGTTAGAG-AATAGCTGAGTGTGTT-GGTTATTTA-GGACA-GANATATTATAATTATT-GT-GGG-ATAGAGTCTGAGATTAA-GATTGTCTTA-GGTTAGTGAAGTTATTTACATAGCTTAGAAGATTGGTTAAAAAAAATCTT-GTGGGTTAAGGATAGTCATTTAGT-AAATTAGATATAT-ACGANGGTGGGAATAAGTAGGTTAGATTATTGATGGTTTCCTTTCNTCAGCATTGCACTCAACTGGTTTATTANAAAACAAT]

[+] EMBL AA999330             [AATTTTTATTTCTTATAAATCAAAGGCATAAAATTGAGAAGAAAAATTTAAAACGTAAGCAGAAACCAAAAACAAACAAACGCAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATTCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTG ATATCTGGTTAGTGACTTTATTTATCGAGTTAGAG AATAGCTGAGTGTGTT GGTTATTTA GGACA GAGATATTATAATTATT GT GGG ATAGAGTCTGAGATTAA GATTGTCTTA GGGTAGTGAAGTTATTTACATAGCTTAGAAGATTGGTTAAAAAAAATCTTGGTGGGTTAAGGATAG CATTT                                                                                                    ]
[+] EMBL AA559638             [                                                                         ATAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATCCATTGAGGTATTGTAGGTTATNCTATTNCCCGAAAGGTNCTCGATTTTATATAGTCCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATNCGTGTGATCTG ATATCTGGTTAGTGACTTTATTTANCGAGTTAGAG AATANCTGAGTGTGTT GGTTATTTA GGACA GANATATTATAATTATT GTGGGG ATAGA                                                                                                                                                                                                    ]
[+] EMBL SM7251               [                                                                         gTAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAA GTTCTCGATTTTATATAGTTCATTCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTG ATATCTGGTTAGTGACTTTNTTTNTCGAGTTNGAGAAATNGCTGAGT                                                                                                                                                                                                                                                        ]
[+] EMBL AA559576             [                                                                                TACAGTCTGGTAGATANTGTACCTTNTGTANCATGATCCANTGAGGTATTGTAGGTTATNCTATTNCCCGAAAGGTNCTCGATTTTATATAGTCCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTNNTGATAAATTATNCGTGTGATCTG ATATCTGGTTAGTGACTTTATTTATCGAGTTAGAG AATANCTGAGTGTGTT GGTTATTTA GGACA NANATATTATAATTATT GT GGG ATACAGTCTGAGAT                                                                                                                                                                                           ]
[+] EMBL AA960709             [                                                                                  CAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATCCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATTCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGT AGTATATTTAGAG AATTATATAGGTAGTGATAAA TA TCGTGTGAT                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AA559484             [                                                                                        GGTAGATAGTGTNCCTTTTGTATCATGATNCATTGAGGTATTGTAGGTTATTCTATTNCCCGAAAGGTTCTCGATTTTATATAGTCCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGANTAAGTANAATNANAGAAATTATATAGGTAGTGATAAATTANTCGTGTGATCTG ANATCTGGTTAATG                                                                                                                                                                                                                                                                                         ]
[+] EMBL AA559446             [                                                                                                 TGTACCTTTTGTANCATGATCCATTGAGGTATTGTAGGTTATNCTATTNCCCGAAAGGTCCTCGATTTTATATAGTCCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAANTTACTGANTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATNCGTGTGANCTG ATANCTGGTTAGTGACTTTATTTANCGAGTTANAN AATANCTGAGTGTGTT GGTTATTTA GGACA GANATATTATAATTATT GT GGG A                                                                                                                                                                                                        ]
[+] EMBL AA559675             [                                                                                                    ACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATTTGTNGTGATAAATTATTCGTGTGATCTG ATATCTGGTTAGTGACTTTATTTATCGAGTTAGAG AATAGCTGAGTGTGTTGGGTTATCTAGGGACA GANATANTATAATTATN GT GGG ATANAGTCCNANATT                                                                                                                                                                                          ]
[+] EMBL AA559665             [                                                                                                    ACCTTTTGTATCATGANTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTG ATATCTGGTTAGTNACTTNATTTATCGAGTTAGAN AATAGCTGAGTGTGTN GGTTATNTA GGACAGGANATATTATAATTATT GT GGG ATAGAGTCNGANATTAA GATTGTCTTA                                                                                                                                                                             ]
[+] EMBL AA559564             [                                                                                                     CCTTTTGTATCATGATTCATTGAGGTATTGTNGGTNATCCTATTTCCCGAAAGGTTCTCGATTTTATATANTTCATCCTATTAATCGTAATTAGTTAG                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AA559739             [                                                                                                      CTTTTGTATCATGATNCATTGAGGTATTGTAGGTTATNCTATTNCCCGAAAGGTNCTCGATTTTATATAGTNCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTNCTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATNCGTGTGATCTGAATATCTGGTTAGTGACTTTATTTATCGAGTTAGAN AANANCTGAGTGTGTT GGTTATTTA GGACANAANATATTATAATTATT GT GGGAATAGAGTCTGAGATTAA NATTGTCTTAGGGTTAGTGAAGTTATTT                                                                                                                                                           ]
[+] EMBL AA559593             [                                                                                                           GTANCATGATCCATTGAGGTATTGTAGGTTATNCTATTNCCCGAAAGGTNCTCGATTTTATATAGTCCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATNCGTGTGATCTG ATATCTGGTTAGTGACTTTATTTANCGAGTTANAG AATAGCTGAGTGTGTT GGTTATTTA GGACA GANATATTATAATTATT GT GGG ATAGANTCTGAGATTAANAATTGNCTTA GGT                                                                                                                                                                         ]
[+] EMBL AA559426             [                                                                                                            TATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATCCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTANTCGTGTGATCTG ATATCTGGTTAGTGACTTTATTTATCGAGTTAGAG AATAGCTGAGTGTGTT GGTTATTTA GGACN NANATATTATAATTATTGGT GGG ATACAGTCNGAGATTNA NATCGTCTTA NGTTAGTGAAa                                                                                                                                                                 ]
[+] EMBL SM7741               [                                                                                                                       ATNGAGGTATTGTAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATNCTATTAATTGTAATTAGGTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGNGTGATCTG ATATCTGGTTAGTGACTTTATTTATCGAGTTAGAG AATAGCTGAGTGTGTT GGNTATTTA GGACA GAGATATTATAATTATT GT GGG ATAGAGNCTGAGATTAA GANTGTCTTA GGTTAGNGAAGTTATTTACATAGCTTAGAAGATTGGNNAATAAAAANCTT GTCGGTTAAGGATAGTCATCTAGTAAAATTAGATATATAACGANGGTGGGAATAAGTAGGTTAGATTATTGATGGTTTCCTTTCNTCAGCATTGCACTCAACTGGTTTATTANAAAACAAT]
[+] EMBL SMAA69219            [                                                                                                                                                                                                                                                      GGTAGTGATAAATTATTCGTGTGATCTG ATATCTGGTTAGTGACTTTATTTATCGAGTTAGAG AATAGCTGAGTGTGTT GGTTATTTA GGACA GAGATATTATAATTATT GT GGG ATAGAGTCTGAGATTAA GATTGTCTTA GGTTAGTGAAGTTATTTACATAGCTTAGAAGATTGGTT AATAAAATC T GTTGGTTAAGGATAGTCATTTAGT AAATTAGATATAT ACGAtg                                                                            ]


>consensus_10895#0 AATTTTTATTTCTTATAAATCAAAGGCATAAAATTGAGAAGAAAAATTTAAAACGTAAGC AGAAACCAAAAACATAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCA TTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATCCT ATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAAT TATATAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTATTTATC GAGTTAGAGAATAGCTGAGTGTGTTGGTTATTTAGGACAGANATATTATAATTATTGTGG GATAGAGTCTGAGATTAAGATTGTCTTAGGTTAGTGAAGTTATTTACATAGCTTAGAAGA TTGGTTAAAAAAAATCTTGTGGGTTAAGGATAGTCATTTAGTAAATTAGATATATACGAN GGTGGGAATAAGTAGGTTAGATTATTGATGGTTTCCTTTCNTCAGCATTGCACTCAACTG GTTTATTANAAAACAAT



consensusID : consensus_10895#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence
                              [CGTGTCACTCAGCTTCACAGTCAGAGACGTTACCACTGAGCTATTCGGGCCGCTAGAGCCGGCGACACCCGGTATTCCCAGCCGGTCACCCATGCAAGTACTGACCGGGCCCAACGTTGCTTAACTGCGGTGATCGGACGAGAACCGGTGCTTTCAACGTGGTATGGTCGCCGGCAACCAACCCTAAGTCATGTCGTTTTGAATACGCAAACCTCATTTGACTGCATCAAACCACACTGTGACTTGGTAAGTGTGACAAAGGAGAACTTATTATTGCTTTTCTAGTCAATAACTATAACACCAAATTACTACACATCAACTGGGACTATAAAGAACAAGCGCGAAATGTAACATTTTGACTTCAATGTTGGAAAATGTATAGAAAACCGAGGATACTTTTAGAGCTATATGTGACCTTTGGTAAATATCCAGTTAAAAACG]

[+] EMBL CD186265             [CGTGTCACTCAGCTTCACAGTCAGAGACGTTACCACTGAGCTATTCGGGCCGCTAGAGCCGGCGACACCCGGTATTCCCAGCCGGTCACCCATGCAAGTACTGACCGGGCCCAACGTTGCTTAACTGCGGTGATCGGACGAGAACCGGTGCTTTCAACGTGGTATGGTCGCCGGCAACCAACCCTAAGTCATGTCGTTTTGAATACGCAAACCTCATTTGACTGCATCAAACCACACTGTGACTTGGTAAGTGTGACAAAGGAGAACTTATTATTGCTTTTCTAGTCAATAACTATAACACCAAATTACTACACATCAACTGGGACTATAAAGAACAAGCGCGAAATGTAACATTTTGACTTCAATGTTGGAAAATGTATAGAAAACCGAGGATACTTTTAGAGCTATATGTGACCTTTGGTAAATATCCAGTTAAAAACG]


>consensus_10895#1 CGTGTCACTCAGCTTCACAGTCAGAGACGTTACCACTGAGCTATTCGGGCCGCTAGAGCC GGCGACACCCGGTATTCCCAGCCGGTCACCCATGCAAGTACTGACCGGGCCCAACGTTGC TTAACTGCGGTGATCGGACGAGAACCGGTGCTTTCAACGTGGTATGGTCGCCGGCAACCA ACCCTAAGTCATGTCGTTTTGAATACGCAAACCTCATTTGACTGCATCAAACCACACTGT GACTTGGTAAGTGTGACAAAGGAGAACTTATTATTGCTTTTCTAGTCAATAACTATAACA CCAAATTACTACACATCAACTGGGACTATAAAGAACAAGCGCGAAATGTAACATTTTGAC TTCAATGTTGGAAAATGTATAGAAAACCGAGGATACTTTTAGAGCTATATGTGACCTTTG GTAAATATCCAGTTAAAAACG



consensusID : consensus_10895#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence
                              [AGTTTGGTGGATAACGTACCTTTTGTATCATGATTCATTGAGGTATTATAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATTCTGTTAATTATAGTTAGTTGGTGAGGTTGGATAAGTTACTAAGTAAGTATAATTAGAGAAACTATGTAGGTAGTGATAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTATTTATCGAACTTAGGGAATAGCTGAGTGTGTTGGTTATTTAGGACAGAAATATTGTAATTATTATGTGATAGGGTCTGAGATTAAGATTGTCTTAGGTTAGTAAAGTTATTTACATAGCTTAGAAGATTGATTAATAAAATCTTGTTGGTTAAGAGAGGC]

[+] EMBL SMAA18522            [AGTTTGGTGGATAACGTACCTTTTGTATCATGATTCATTGAGGTATTATAGGTTATTCTATTTCCCGAAAGGTTCTCGATTTTATATAGTTCATTCTGTTAATTATAGTTAGTTGGTGAGGTTGGATAAGTTACTAAGTAAGTATAATTAGAGAAACTATGTAGGTAGTGATAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTATTTATCGAACTTAGGGAATAGCTGAGTGTGTTGGTTATTTAGGACAGAAATATTGTAATTATTATGTGATAGGGTCTGAGATTAAGATTGTCTTAGGTTAGTAAAGTTATTTACATAGCTTAGAAGATTGATTAATAAAATCTTGTTGGTTAAGAGAGGC]


>consensus_10895#2 AGTTTGGTGGATAACGTACCTTTTGTATCATGATTCATTGAGGTATTATAGGTTATTCTA TTTCCCGAAAGGTTCTCGATTTTATATAGTTCATTCTGTTAATTATAGTTAGTTGGTGAG GTTGGATAAGTTACTAAGTAAGTATAATTAGAGAAACTATGTAGGTAGTGATAATTATTC GTGTGATCTGATATCTGGTTAGTGACTTTATTTATCGAACTTAGGGAATAGCTGAGTGTG TTGGTTATTTAGGACAGAAATATTGTAATTATTATGTGATAGGGTCTGAGATTAAGATTG TCTTAGGTTAGTAAAGTTATTTACATAGCTTAGAAGATTGATTAATAAAATCTTGTTGGT TAAGAGAGGC



consensusID : consensus_10895#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 355
fasta sequence
                              [GATAAATTATCCGNGTGATCTGATATCTGGTTAGTGACTTTATTTATCGAGTTAGAGAATAGCTGAGTGTGTTGGTTATTTAGGACAGAGATATTATAATTATTGTGGGATAGAGTCTGAGATTAAGATTGNCTTAGGTTAGTGAAGTNATTTACATAGCTTAGAAGATTGGTTAATAAAAATCTCGTNGGCTAAGGATAGNCATTTAGTAAAATTAGATATATAACGATGGTGGAATAAGTAGGTTAGATTATTGATTGTTTCTTNNCCCCAGTATTGCACTCAACTGTNTATTAAAAACATGGCTATNAGTTAATCNTCTACTAGCAAGGCCCGCTCAGTGAAGAAGTNTGNT]

[+] EMBL SM7311               [GATAAATTATCCGNGTGATCTGATATCTGGTTAGTGACTTTATTTATCGAGTTAGAGAATAGCTGAGTGTGTTGGTTATTTAGGACAGAGATATTATAATTATTGTGGGATAGAGTCTGAGATTAAGATTGNCTTAGGTTAGTGAAGTNATTTACATAGCTTAGAAGATTGGTTAATAAAAATCTCGTNGGCTAAGGATAGNCATTTAGTAAAATTAGATATATAACGATGGTGGAATAAGTAGGTTAGATTATTGATTGTTTCTTNNCCCCAGTATTGCACTCAACTGTNTATTAAAAACATGGCTATNAGTTAATCNTCTACTAGCAAGGCCCGCTCAGTGAAGAAGTNTGNT]
[+] EMBL SM6642               [    AATTATNCGTGNGATCTGATATCTGGTTAGTGACTTTATTTATCGAGTTAGAGAATAGCTGAGTGTGTTGNTTATTTAGGACAGAGATATTATNATTATNGTGGGATAGAGTCTGAGATTAAGATNGNCTTAGGTTAGNGAAGNNATTTAC                                                                                                                                                                                                        ]


>consensus_10895#3 GATAAATTATCCGNGTGATCTGATATCTGGTTAGTGACTTTATTTATCGAGTTAGAGAAT AGCTGAGTGTGTTGGTTATTTAGGACAGAGATATTATAATTATTGTGGGATAGAGTCTGA GATTAAGATTGNCTTAGGTTAGTGAAGTNATTTACATAGCTTAGAAGATTGGTTAATAAA AATCTCGTNGGCTAAGGATAGNCATTTAGTAAAATTAGATATATAACGATGGTGGAATAA GTAGGTTAGATTATTGATTGTTTCTTNNCCCCAGTATTGCACTCAACTGTNTATTAAAAA CATGGCTATNAGTTAATCNTCTACTAGCAAGGCCCGCTCAGTGAAGAAGTNTGNT



consensusID : consensus_10895#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence
                              [GCTCGGTACCCTGGTCTTCCAACANTCATCTCCAAACATCATCTCTAGGGATTGTCTCGTGATGAGGTTTGTTAATTTCCGCGATGTGTGTTCCATCCACTCCCAACGCCTTTTCCTAATTTCCTATCCAGCTAAAAGCTAGTTTGTTCCTTGTCACTGTAAGCTGTTGCTGATGGTATCCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAA]

[+] EMBL CD067735             [GCTCGGTACCCTGGTCTTCCAACANTCATCTCCAAACATCATCTCTAGGGATTGTCTCGTGATGAGGTTTGTTAATTTCCGCGATGTGTGTTCCATCCACTCCCAACGCCTTTTCCTAATTTCCTATCCAGCTAAAAGCTAGTTTGTTCCTTGTCACTGTAAGCTGTTGCTGATGGTATCCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAA]


>consensus_10895#4 GCTCGGTACCCTGGTCTTCCAACANTCATCTCCAAACATCATCTCTAGGGATTGTCTCGT GATGAGGTTTGTTAATTTCCGCGATGTGTGTTCCATCCACTCCCAACGCCTTTTCCTAAT TTCCTATCCAGCTAAAAGCTAGTTTGTTCCTTGTCACTGTAAGCTGTTGCTGATGGTATC CAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCG AATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTG AGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAA



consensusID : consensus_10895#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 256
fasta sequence
                              [CTCAATATCCGTTGGCCGGATACAATCAGCAACAGCCTATTGTGGGAGAAAACAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAGACACTGGAGGTGGATAGGACATACATTGAGGAAATCGCCAAACTGCATTTGAGGCAAGCGCTAAACTGGAATCCTGAAAGAAAACGGCAGCCTATACTTTTCTAAGAGGGTTAACAAGAGTAAGTAGGTAAGCAAGTTAAAAGTAAAGGGAAAAATAGTAGGTGTAT]

[+] EMBL CD119294             [CTCAATATCCGTTGGCCGGATACAATCAGCAACAGCCTATTGTGGGAGAAAACAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAGACACTGGAGGTGGATAGGACATACATTGAGGAAATCGCCAAACTGCATTTGAGGCAAGCGCTAAACTGGAATCCTGAAAGAAAACGGCAGCCTATACTTTTCTAAGAGGGTTAACAAGAGTAAGTAGGTAAGCAAGTTAAAAGTAAAGGGAAAAATAGTAGGTGTAT]
[+] EMBL CD119575             [CTCAATATCCGTTGGCCGGATACAATCAGCAACAGCCTATTGTGGGAGAAAACAAACCAGCTTCCAGCTGAAGAGGTAATTAGGAAAAGACACTGGAGGTGGATAGGACATACATTGAGGAAATCGCCAAACTGCATTTGAGGCAAGCGCTAAACTGGAATCCTGAAAGAAAACGGCAGCCTATACTTTTCTAAGAGGGTTAACAAGAGTAAGTAGGTAAGCAAGTTAAAAGTAAAGGGAAAAATAGTAGGTGTAT]


>consensus_10895#5 CTCAATATCCGTTGGCCGGATACAATCAGCAACAGCCTATTGTGGGAGAAAACAAACCAG CTTCCAGCTGAAGAGGAAATTAGGAAAAGACACTGGAGGTGGATAGGACATACATTGAGG AAATCGCCAAACTGCATTTGAGGCAAGCGCTAAACTGGAATCCTGAAAGAAAACGGCAGC CTATACTTTTCTAAGAGGGTTAACAAGAGTAAGTAGGTAAGCAAGTTAAAAGTAAAGGGA AAAATAGTAGGTGTAT



consensusID : consensus_10895#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence
                              [TTATTCGTGTGAACTGATATCTGGGTAGTGACTTTATTTATCGAGTTTGGGAATAGCTGAGTGTGTTGGTTATTTAGGGCAGGGGTATTTTAATTATTGTGGGATAGAGTCTGGGATTAAGATTGTCTTAGGTTAGTGAAGTCAATTTACATAGCTTAG]

[-] EMBL AA999523             [TTATTCGTGTGAACTGATATCTGGGTAGTGACTTTATTTATCGAGTTTGGGAATAGCTGAGTGTGTTGGTTATTTAGGGCAGGGGTATTTTAATTATTGTGGGATAGAGTCTGGGATTAAGATTGTCTTAGGTTAGTGAAGTCAATTTACATAGCTTAG]


>consensus_10895#6 TTATTCGTGTGAACTGATATCTGGGTAGTGACTTTATTTATCGAGTTTGGGAATAGCTGA GTGTGTTGGTTATTTAGGGCAGGGGTATTTTAATTATTGTGGGATAGAGTCTGGGATTAA GATTGTCTTAGGTTAGTGAAGTCAATTTACATAGCTTAG



consensusID : consensus_10895#7
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 128
fasta sequence
                              [AAATTTNCAGTCTGGTAGATAGTGTACCTTTTGTATCATGANCCATTGAGGTATTGTAGGTTATNCTATNTCCCGAAAGGTTCTCGATCTTATATAGTNCATCCTATCACATTGTAATNAGCTTAGTG]

[+] EMBL AA559518             [AAATTTNCAGTCTGGTAGATAGTGTACCTTTTGTATCATGANCCATTGAGGTATTGTAGGTTATNCTATNTCCCGAAAGGTTCTCGATCTTATATAGTNCATCCTATCACATTGTAATNAGCTTAGTG]


>consensus_10895#7 AAATTTNCAGTCTGGTAGATAGTGTACCTTTTGTATCATGANCCATTGAGGTATTGTAGG TTATNCTATNTCCCGAAAGGTTCTCGATCTTATATAGTNCATCCTATCACATTGTAATNA GCTTAGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10895#0      AATTTTTATTTCTTATAAATCAAAGGCATAAAATTGAGAAGAAAAATTTAAAACGTAAGC 60
consensus_10895#7      ------------------------------------------------------------
consensus_10895#2      ------------------------------------------------------------
consensus_10895#3      -----------------------------------------------------------G 1
consensus_10895#6      ------------------------------------------------------------
consensus_10895#4      ------------------------------------------------------------
consensus_10895#5      ------------------------------------------------------------
consensus_10895#1      ----CGTGTCACTCAGCTTCACAGTCAGAGACGTTACCACTGAGCTATTCGGGCCGCTAG 56
                                                                                   

consensus_10895#0      AGAAACCAAAAACATAAATTTACAGTCTGGTAGATA-GTGTACCTTTTGTATCATGATTC 119
consensus_10895#7      ---------------AAATTTNCAGTCTGGTAGATA-GTGTACCTTTTGTATCATGANCC 44
consensus_10895#2      -----------------------AGTTTGGTGGATA-ACGTACCTTTTGTATCATGATTC 36
consensus_10895#3      ATAAATTATCCGNGTGATCTGATATCTGGTTAGTGA-CTTTATTTATCGAGTTAGAGAAT 60
consensus_10895#6      -----TTATTCGTGTGAACTGATATCTGGGTAGTGA-CTTTATTTATCGAGTTTGGGAAT 54
consensus_10895#4      --------GCTCGGTACCCTGGTCTTCCAACANTCATCTCCAAACATCATCTCTAGGGAT 52
consensus_10895#5      ------------------CTCAATATCCGTTGGCCGGATACAATCAGCA----ACAGCCT 38
consensus_10895#1      AGCCGGCGACACCCGGTATTCCCAGCCGGTCACCCA--TGCAAGTACTGACCGGGCCCAA 114
                                                                *                  

consensus_10895#0      ATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGGTTCTCGATT---TTATATAGTTCA 176
consensus_10895#7      ATTGAGGTATTGTAGGTTATNCTATNTCCCGAAAGGTTCTCGATC---TTATATAGTNCA 101
consensus_10895#2      ATTGAGGTATTATAGGTTATTCTATTTCCCGAAAGGTTCTCGATT---TTATATAGTTCA 93
consensus_10895#3      AGCTGAGTGT-GTTGGTTATTTAGGA--CAGAGATATTATAATTA---TTGTGGGATAGA 114
consensus_10895#6      AGCTGAGTGT-GTTGGTTATTTAGGG--CAGGGGTATTTTAATTA---TTGTGGGATAGA 108
consensus_10895#4      TGTCTCGTGATGAGGTTTGTTAATTTCCGCGATGTGTGTTCCATCCACTCCCAACGCCTT 112
consensus_10895#5      ATTGTGGGA--GAAAACAAACCAGCTTCCAGCTGAAGAGGAAATT------AGGAAAAGA 90
consensus_10895#1      CGTTGCTTAACTGCGGTGATCGGACGAGAACCGGTGCTTTCAACGTGGTATGGTCGCCGG 174
                                                                                   

consensus_10895#0      TCCT---ATTA-ATTGTAATTAG-TTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAAT 231
consensus_10895#7      TCCT---ATCACATTGTAATNAGCTTAGTG------------------------------ 128
consensus_10895#2      TTCT---GTTA-ATTATAGTTAG-TTGGTGAGGTTGGATAAGTTACTAAGTAAGTATAAT 148
consensus_10895#3      GTCTGAGATTAAGATTGNCTTAGGTTAGTGAAGTNA-TTTACATAGCTTAGAAGATTGGT 173
consensus_10895#6      GTCTGGGATTAAGATTGTCTTAGGTTAGTGAAGTCAATTTACATAGCTTAG--------- 159
consensus_10895#4      TTCCTAATTTCCTATCCAGCTAA--AAGCTAGTTTGTTCCTTGTCACTGTAAGCTGTTGC 170
consensus_10895#5      CACTGGAGGTGGATAGGACATACATTGAGGAAATCGCCAAACTGCATTTGAGGCAAGCGC 150
consensus_10895#1      CAACCAACCCTAAGTCATGTCGTTTTGAATACGCAAACCTCATTTGACTGCATCAA--AC 232
                                                                                   

consensus_10895#0      TAG--AGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGA 289
consensus_10895#7      ------------------------------------------------------------
consensus_10895#2      TAG--AGAAACTATGTAGGTAGTGATAA-TTATTCGTGTGATCTGATATCTGGTTAGTGA 205
consensus_10895#3      TAA--TAAAAATCTCGTNGGCTAAGGATAGNCATTTAGTAAAATTAGATATATAACGATG 231
consensus_10895#6      ------------------------------------------------------------
consensus_10895#4      TGA--TGGTATCCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGT 228
consensus_10895#5      TAAACTGGAATCCTGAAAGAAAACGGCAGCCTATACTTTTCTAAGAGGGTTAACAAGAGT 210
consensus_10895#1      CACACTGTGACTTGGTAAGTGTGACAAAGGAGAACTTATTATTGCTTTTCTAGTCAATAA 292
                                                                                   

consensus_10895#0      CTTTAT-TTATCGAG-TTAGAGAATAGCTGAGTGTGTTGGTTATTTAGGACAGANATATT 347
consensus_10895#7      ------------------------------------------------------------
consensus_10895#2      CTTTAT-TTATCGAACTTAGGGAATAGCTGAGTGTGTTGGTTATTTAGGACAGAAATATT 264
consensus_10895#3      GTGGAA-TAAGTAGGTTAGATTATTGATTGTTTCTTNNCCCCAGTATTGCACTCAACTGT 290
consensus_10895#6      ------------------------------------------------------------
consensus_10895#4      TCGCTC-CAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTG-CAGCACAACCGGAACG 286
consensus_10895#5      AAGTAGGTAAGCAAGTTAAAAGTAAAGGGAAAAATAGTAGGTGTAT-------------- 256
consensus_10895#1      CTATAACACCAAATTACTACACATCAACTGGGACTATAAAGAACAAGCGCGAAATGTAAC 352
                                                                                   

consensus_10895#0      ATAATTATTGTGGGATAGAGTCTGAGATTAAGATTGTCTTAGGTTAGTGAAGTTATTTAC 407
consensus_10895#7      ------------------------------------------------------------
consensus_10895#2      GTAATTATTATGTGATAGGGTCTGAGATTAAGATTGTCTTAGGTTAGTAAAGTTATTTAC 324
consensus_10895#3      NTATTAAAAACATGGCTATNAGTTAATCNTCTACTAGCAAGGCCCGCTCAGTGAAGAAGT 350
consensus_10895#6      ------------------------------------------------------------
consensus_10895#4      GGAACGATTGGTTGAGCGTGTCGGTGAGATGGA--GGCGGAATATGGTGAAGTTGGTGAA 344
consensus_10895#5      ------------------------------------------------------------
consensus_10895#1      ATTTTGACTTCAATGTTGGAAAATGTATAGAAAACCGAGGATACTTTTAGAGCTATATGT 412
                                                                                   

consensus_10895#0      ATAGCTTAGAAGATTGGTTAAAAAAAATCTTGTGGGTTAAGGATAGTCATTTAGTAAATT 467
consensus_10895#7      ------------------------------------------------------------
consensus_10895#2      ATAGCTTAGAAGATTGATTAATAAAATCTTGTTGGTTAAGAGAGGC-------------- 370
consensus_10895#3      NTGNT------------------------------------------------------- 355
consensus_10895#6      ------------------------------------------------------------
consensus_10895#4      ------------------------------------------------------------
consensus_10895#5      ------------------------------------------------------------
consensus_10895#1      GACCTTTGGTAAATATCCAGTTAAAAACG------------------------------- 441
                                                                                   

consensus_10895#0      AGATATATACGANGGTGGGAATAAGTAGGTTAGATTATTGATGGTTTCCTTTCNTCAGCA 527
consensus_10895#7      ------------------------------------------------------------
consensus_10895#2      ------------------------------------------------------------
consensus_10895#3      ------------------------------------------------------------
consensus_10895#6      ------------------------------------------------------------
consensus_10895#4      ------------------------------------------------------------
consensus_10895#5      ------------------------------------------------------------
consensus_10895#1      ------------------------------------------------------------
                                                                                   

consensus_10895#0      TTGCACTCAACTGGTTTATTANAAAACAAT 557
consensus_10895#7      ------------------------------
consensus_10895#2      ------------------------------
consensus_10895#3      ------------------------------
consensus_10895#6      ------------------------------
consensus_10895#4      ------------------------------
consensus_10895#5      ------------------------------
consensus_10895#1      ------------------------------
                                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)