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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1100 fasta sequence
[GGGCCCTTACCAATCTGTAGTGGGTGATCCCCTGGAAAAATTATTGCGGTTATGCGGCCAAACTGAAATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAAAATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGA-CCTACTATTACCTCATCACATAAGAGAACAATGGCATCTGTACGGCACCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCATTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTAGGCTGGAACGTTTCCCTATCCAATCTTTTTCTGGCAAAAAGTCTGACTCAGCTGTCGGTTCGTGTAATAGCAGTTTGGCGAATGAATCACAGACAGAAACTAAGGCTTCGAAAGAGTTGCTATCCTTGTTCTCTCCCAGAAGATTTAGTTCAGCTGGAAAAGATCAGGCAGCCAAGCTAAA]
[+] EMBL CD067526 [GGGCCCTTACCAATCTGTAGTGGGTGATCCCCTGGAAAAATTATTGCGGTTATGCGGCCAAACTGAAATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAAAATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGA ]
[+] EMBL CD127470 [ AAATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAAAATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATG ]
[+] EMBL CD194387 [ ATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAAAATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAGTGGATGGTTTTAGAATCTGAATTTGCTGGATAGCCACTTTCCAATG ]
[-] EMBL CD127546 [ AGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTACAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGA CCTACTATT ]
[+] EMBL CD187682 [ TCAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGGAGCTCGTTCTGTGAT ]
[-] EMBL CD127710 [ AATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAAAGTATTGGTCCGA CC ]
[+] EMBL CD112174 [ AACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCCGACT CGACCTCATCACATAAGAGAACAATGGCATCTGTACGGCACCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCATTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGATTTAAGTGAAACTACTACACGGGTGACGCGTTCATGTAGTGTCAA ]
[-] EMBL CD186635 [ TGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGGTTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTAGGCTGGAACGTTTCCCTATCCAATCTTTTTCTGGCAAAAAGTCTGACTCAGCTGTCGGTTCGTGTAATAGCAGTTTGGCGAATGAATCACAGACAGAAACTAAGGCTTCGAAAGAGTTGCTATCCTTGTTCTCTCCCAGAAGATTTAGTTCAGCTGGAAAAGATCAGGCAGCCAAGCTAAA]
[-] EMBL CD181463 [ CTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAATCAAAAACGTTCTTTGCGAAGCAGTCTCCGGCGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTAGGCTGGAACGTTTCCCTtagcg ]
consensusID : consensus_10896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 994 fasta sequence
[CCAATAATTCGGCACGAGGGTCAACGGGNGTTGAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCTACTCGACAATCGAAACTGCGTTATCGTGTTGGGGGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC-ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGG-TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT]
[+] EMBL CD081665 [CCAATAATTCGGCACGAGGGTCAACGGGNGTTGAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCTACTCGACAATTGAAACT TTATCGTGTTGGGGGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTNTTTTGTTNTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCNTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAAGTCGAT ATTTTTCCCGTTTCTTGACATACGTTCTATGTTTGTGG TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAG ]
[+] EMBL CD079942 [ TGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCTACTCGACAATCGAAACTGCGTTATCGTGTTGGGGGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTNTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACG TTATCATGAAGTTCGATAATTTTTCCGGNTTCTTGA ATACGTNCTATGNTTGNGGNNTAGTTNTGGATATTTTTTGTAGA CTCGTCTC AAATCGC TTTTGTATCAT AAATATTa ]
[+] EMBL CD078761 [ CCGACCTACTCGACAATCGAAACTGCGTTATCGTGTTGGGGGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACG ]
[-] EMBL BG932392 [ GGAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTATCCCGTCTTTGTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTAGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTc ]
[-] EMBL CD074139 [ TCACAGTATCCCGTCTTGTTC ATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGG TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT]
[-] EMBL CD073658 [ ATCCCGTC TTGTCGAGGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTTTTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGAATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGG TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT]
[-] EMBL CD073221 [ GCTTCATTATCTTATGGGGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTTTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGG TTAGTTTTGGATATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT]
[+] EMBL CD145898 [ GGAAACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTGAATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTGTAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTCCCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAA ]
[-] EMBL CD202637 [ GTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTTTCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTTCCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATGAAGTTCGATAATTT ]
consensusID : consensus_10896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 736 fasta sequence
[GTTAAGATATGCTGTATTGCGGTGCATCAAATCAATCGCAAAGCGTTGCAGTTTCTTCGCTAATCAGGTGCTGAAGGTCCTACACTCCATAAATGAATGGAAATTGCTACACTTTCAAATGGTTTTTGGACGTCATGGTTGTGAAATGGTAGGTGAATCGGGTTATCAACTTAGAAATTTGCCAAACAACCGCTCTAAGCGTAACATAGAGATCGAGTGTGATTCCAATACCTGTGGGCATCAAGCTAAGCGTCCACGTCGTTCTGACTCGACCTCATCACATAAAGAGAACAATGGCATCTGTACGGCCCCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCATTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTANGCTGGAAACGTTCCCTATCCAATCTTTTTCTGGCANAAAGTCTGACTCAGCTGTCAGTTCGTGTAATANCCAGTTTGGCGAATGAATCACAGACAGAAACTAAGGCTTCAAAGAGGNGCTATCCTTGGTCTCTCCAGAAGATTANNTTACCTGGAAAAGATCAAGCCCC]
[-] EMBL CD156090 [GTTAAGATATGCTGTATTGCGGTGCATCAAATCAATCGCAAAGCGTTGCAGTTTCTTCGCTAATCAGGTGCTGAAGGTCCTACACTCCATAAATGAATGGAAATTGCTACACTTTCAAATGGTTTTTGGACGTCATGGT ]
[+] EMBL CD179568 [ GGTCCTACACTCCATAAATGAATGGAAATTGCTACACTTTCAAATGGTTTTTGGACGTCATGGTTGTGAAATGGTAGGTGAATCGGGTTATCAACTTAGAAATTTGCCAAACAACCGCTCTAAGCGTAACATAGAGATCGAGTGTGATTCCAATACCTGTGGGCATCAAGCTAAGCGTCCACGTCGTTCTGACTCGACCTCATCACATAAAGAGAACAATGGCATCTGTACGGCCCCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCATTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTAAAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAACAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAACTATTCCGAATGCCATATTACAGGTTANGCTGGAAACGTTCCCTATCCAATCTTTTTCTGGCANAAAGTCTGACTCAGCTGTCAGTTCGTGTAATANCCAGTTTGGCGAATGAATCACAGACAGAAACTAAGGCTTCAAAGAGGNGCTATCCTTGGTCTCTCCAGAAGATTANNTTACCTGGAAAAGATCAAGCCCC]
consensusID : consensus_10896#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence
[CAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGGCCGACCTACTCGACAATCGAAACTGCGT]
[+] EMBL CD163757 [CAGTCACCGAAGGGCAATGTAGTCAAAATCTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGGCCGACCTACTCGACAATCGAA ]
[-] EMBL CD163749 [ CCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGTTTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGCAACCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAAGGCTTTAGCTACAAGTTGGAGAAAATATGAAAGTCAACGGGGTTCAGACAACGAATGTCTGGACTTCTTACCTGCTGAACAACAATGGATGGTTTTAGAATCTGAATTTGCTGGAGAGCCACTTTCCAATGTACGATTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTACATTGGCATAATGTATTGGTCCGACCTACTCGACAATCGAAACTGCGT]
consensusID : consensus_10896#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 165 fasta sequence
[AGTAGCAGGTTTAGACGTGAAAAATGTACTCCCAGCTGTTATTTGTGTATACTTAGTTGATCTTAGTGATTTTAGTACTACATGCTCTTTATCGATGTTACATTTATATGTTTATGAAGTTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCAT]
[+] EMBL CD158559 [AGTAGCAGGTTTAGACGTGAAAAATGTACTCCCAGCTGTTATTTGTGTATACTTAGTTGATCTTAGTGATTTTAGTACTACATGCTCTTTATCGATGTTACATTTATATGTTTATGAAGTTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCAT]
[+] EMBL CD158656 [AGTAGCAGGTTTAGACACGAAAAATGTACTCCCAGCTGTTATTTGTGTATACTTAGTTGATCTTAGTGATTTTAGTACTACATGCTCTTTATCGATGTTACATTTATATGTTTATGAAGTTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAACAGATAGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10896#0 GGGCCCTTACCAATCTGTAGTGGGTGATCCCCTGGAAAAATTATTGCGGTTATGCGGCCA 60
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 ------------------------------------------------------------
consensus_10896#2 ------------------------------------------------------------
consensus_10896#0 AACTGAAATCAAGTCATTCGATGAATATTTTGATCATACAATAGTTGAAAGTATGGTGAA 120
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 ------------------------------------------------------------
consensus_10896#2 ------------------------------------------------------------
consensus_10896#0 AATTGGCGAGGGTGTGTATGGTGAGGTATTTCAGTCACCGAAGGGCAATGTAGTCAAAAT 180
consensus_10896#3 -------------------------------CAGTCACCGAAGGGCAATGTAGTCAAAAT 29
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 ------------------------------------------------------------
consensus_10896#2 ------------------------------------------------------------
consensus_10896#0 CTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGT 240
consensus_10896#3 CTTCCCTGTGGATGGAGAAGATCTTGTTAATGGTGAGAAGCAAATGAAGTTTGAAGAAGT 89
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 ------------------------------------------------------------
consensus_10896#2 ------------------------------------------------------------
consensus_10896#0 TTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAA 300
consensus_10896#3 TTATCCCGAAGTGTTCGTGTCGCAGAAGTTAAGTGAGCTTGCATACAAGTATCGACGTAA 149
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 ------------------------------------------------------------
consensus_10896#2 ------------------------------------------------------------
consensus_10896#0 CCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAA 360
consensus_10896#3 CCGGTCAGTCAATTTTGCTCAGCTAAAAAGAGCAACTGTTGTTCGAGGAAAACTACCTAA 209
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 ------------------------------------------------------------
consensus_10896#2 ------------------------------------------------------GTTAAG 6
consensus_10896#0 GGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGG-GGTTCAGACAACGAATGTC 419
consensus_10896#3 GGCTTTAGCTTCAAGTTGGAGAAAATATGAAAGTCAACGG-GGTTCAGACAACGAATGTC 268
consensus_10896#4 ----------------AGTAGCAGGTTTAGACGTGAAAAA-TGTACTCCCAGCTGTTATT 43
consensus_10896#1 -------------CCAATAATTCGGCACGAGGGTCAACGGGNGTTGAGACAACGAATGTC 47
consensus_10896#2 ATATGCTGTATTGCGGTGCATCAAAT-CAATCGCAAAGCGTTGCAGTTTCTTCGCTAATC 65
* * ** * * * *
consensus_10896#0 TGGACTTCTTA--CCTGCTGAACAACAATGGAT--GGTTTTAGAATCTGAATTTGCTGGA 475
consensus_10896#3 TGGACTTCTTA--CCTGCTGAACAACAATGGAT--GGTTTTAGAATCTGAATTTGCTGGA 324
consensus_10896#4 TG---TGTATA--CTTAGTTGATCTTAGTGATTTTAGTACTACATGCT--CTTTATCGAT 96
consensus_10896#1 TGGACTTCTTA--CCTGCTGAACAACAATGGAT--GGTTTTAGAATCTGAATTTGCTGGA 103
consensus_10896#2 AGGTGCTGAAGGTCCTACACTCCATAAATGAATGGAAATTGCTACACT--TTCAAATGGT 123
* * * * ** * * ** * *
consensus_10896#0 GAGCCACTTTCCAATGTACGA--TTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAAC 533
consensus_10896#3 GAGCCACTTTCCAATGTACGA--TTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAAC 382
consensus_10896#4 GTTACATTTATATGTTTATGAAGTTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAAC 156
consensus_10896#1 GAGCCACTTTCCAATGTACGA--TTCAACACTTGCCGTGAAGCTCGTTCTGTGATTGAAC 161
consensus_10896#2 TTTTGGACGTCATGGTTGTGAAATGGTAGGTGAATCGGGTTATCAACTTAGAAATTTGCC 183
* ** * * ** * * * *** *
consensus_10896#0 AGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTAC 593
consensus_10896#3 AGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTAC 442
consensus_10896#4 AGATAGCAT--------------------------------------------------- 165
consensus_10896#1 AGATAGCATTGTCCTTGGCTGCCGCTGAATCTGCTCTTCAATTTGAACATAGAGACTTAC 221
consensus_10896#2 AAACAAC--CGCTCTAAGCGTAACATAGAGATCGAGTGTGATTCCAATACCTGTGG--GC 239
* * * *
consensus_10896#0 ATTGGCATAATGTATTGGTCCGACCTACTATTACCTCATCACA-TAAGAGAACAATGGCA 652
consensus_10896#3 ATTGGCATAATGTATTGGGCCGACCTACTCGACAATCGAAAC--TGCGT----------- 489
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 ATTGGCATAATGTATTGGTCCGACCTACTCGACAATCGAAACTGCGTTATCGTGTTGGGG 281
consensus_10896#2 ATCAAGCTAAGCGTCCACGTCGTTCTGACTCGACCTCATCACATAAAGAGAACAATGGCA 299
consensus_10896#0 TCTGTACGGCACCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCA 712
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 GAGTGAGTTATGCTGTTTTCACTGAAGGAATACAAGTTACAATAATTGATTTCACAGTAT 341
consensus_10896#2 TCTGTACGGCCCCAAAAAACATGTTCCCATCTAGGTCTAGAATACCTCCATTAAGGAGCA 359
consensus_10896#0 TTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTA 772
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 CCCGTCTTTGTCATGAAGGCAACATTGTTTACGTTGATATGTCAGAGTCACCAGAAATTT 401
consensus_10896#2 TTCATCCGATGAATACGATCAATGAGTCCACAAATGTGTCAACACTTGTTCGGAGACTTA 419
consensus_10896#0 AAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAA 832
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 TTGAGTGTGAAGGGGATTATCAATTCGACATTTACCGTATAATGCGCGAAAACAATGGGA 461
consensus_10896#2 AAGTACCTGGAGATTTAAGTGAAACTACTACACGGCTGACGCGTTCATGTAGTGTCAAAA 479
consensus_10896#0 CAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAA 892
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 ATGATTGGCGTCCCTTTCATCCAAGTTCCAATCTTTATTGGCTTCATTATCTTATGGGGA 521
consensus_10896#2 CAAGTCCAGTTGTCAACCAAAAACGTACTTTGCGAAGCAGTCACCGACGCAGCATTCAAA 539
consensus_10896#0 CTATTCCGAATGCCATATTACAGGTTAGGCTGGAACGTTTCCCTATCCAATCTTTTTCTG 952
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 AACTTTTAAACGAAACATCTTATCCCAGACGTGATCCTGATTCTCAACCTGTGGAATCTG 581
consensus_10896#2 CTATTCCGAATGCCATATTACAGGTTANGCTGGAAACGTTCCCTATCCAATCTTTTTCTG 599
consensus_10896#0 GCAAAAAGTCTGACTCAGCTGTCGGTTCGTGTAATAGCAGTTTGGCGAATGAATCACAGA 1012
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 AATTGCGCGCATTGTATGACATGGTATTAGCAGGTGATTATAATTCTGCCACGCAACTTG 641
consensus_10896#2 GCANAAAGTCTGACTCAGCTGTCAGTTCGTGTAATANCCAGTTTGGCGAATGAATCACAG 659
consensus_10896#0 CAGAAACTAAGGCTTCGAAAGAGTTGCTATCCTTGTTCTCTCCCAGAAGATTTAGTTCAG 1072
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 TAAGCTCAAGTTTCTACTTCGATTCTTGTCGAATCGGTTAACAGGGACTTGATGGACTTC 701
consensus_10896#2 ACAGAAACTAAGGCTTCAAAGAGGNGCTATCCTTGGTCTCTCCAGAAGATTANNTTACCT 719
consensus_10896#0 CTGGAAAAGATCAGGCAGCCAAGCTAAA-------------------------------- 1100
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 CCAAAACGTCAAAGATTGTTGCTGTTTAGTTTGGTTCCGCCTTTTGATCCTTATAATCTT 761
consensus_10896#2 GGAAAAGATCAAGCCCC------------------------------------------- 736
consensus_10896#0 ------------------------------------------------------------
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 TCATACAAAACTCCTTCGTTTTTTTGTTTTGATAAATGATATGTGTAAAGTAGAACTCTT 821
consensus_10896#2 ------------------------------------------------------------
consensus_10896#0 ------------------------------------------------------------
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 CCCATTCACATTCTAATTCTTTAGAAGAGGGACGCTAGCTTTGTGAAAACGTTTATCATG 881
consensus_10896#2 ------------------------------------------------------------
consensus_10896#0 ------------------------------------------------------------
consensus_10896#3 ------------------------------------------------------------
consensus_10896#4 ------------------------------------------------------------
consensus_10896#1 AAGTTCGATAATTTTTCCGGTTTCTTGACATACGTTCTATGTTTGTGGTTAGTTTTGGAT 941
consensus_10896#2 ------------------------------------------------------------
consensus_10896#0 -----------------------------------------------------
consensus_10896#3 -----------------------------------------------------
consensus_10896#4 -----------------------------------------------------
consensus_10896#1 ATTTTTTGTAGACCTCGTCTCAAAATCGCTTTTTGTATCATAAAATATTTAGT 994
consensus_10896#2 -----------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||