These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1044 fasta sequence [AGTAGATGGATTATTGTGTCGTTGATACGAATCATTATCATTACGATTNTGCGATCCATTAATTAATGGTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTCAGTCATACCACCAAAAAGAAATAAACTACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTCTATTCTCGGTGAAGTGGATTTTAGTTGCAGAATTATATTAGACATCAGAATGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG-GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC-TTCGTTCTTGAATAGCTA-AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA-TTATTT-TGAAAAGTTATACTGTTTAACTCGG-AGTTCAGTTTCATGCGATTCCAATATCTGC-GC-TGTTTAGCTGCCTCGTCCAACAATGCTGTAGTAGGTTGACTGATGACAACAACAGTATAGACATTGTGTACAACTGAGTGGTTTGTACCAACGTCGTCACTCGGTACAGAGATAAAATTACTGTCCTTTGCCAACAACTGTGACTTATTCTCTTCGAGATATGGAAGTGAAACTGCGGTTGCATGATAAAAGTCTATCGGTGGGCATCCAGGGATACCCTCGGAACATTGAACTTTGGTCCAGAACCAATTTACTTCAAACCATTCTTGACCAATATTCGGTGAACAACGAGTAAGTATCCATATATCTCTCGCCGGTCGACCATG] [-] EMBL CD189046 [AGTAGATGGATTATTGTGTCGTTGATACGAATCATTATCATTACGATTNTGCGATCCATTAATTAATGGTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTCAGTCATACCACCAAAAAGAAATAAACTACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTCTATTCTCGGTGAAGTGGATTTTAGTTGCAGAATTATATTAGACATCAGAATGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGTACGATAAGCTCATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGCGATGAACTTAGGTTTGATGGAAACGATCGAGCAAATGATTATGC ] [-] EMBL CD096259 [ TGACCAAAAGCACATGAANAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTTTATTTTCGGTGAAGTGGATTTTAGTTGCAGAATTATATAAGACATCAGAATGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCACGCGATTCCAATATCTGC GC TGagtat ] [-] EMBL CD112819 [ cagGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCGATCAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAA ATCTGCGGCGTGTTTACCAGCCTCGatacc ] [+] EMBL CD142763 [ TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTTCTG AGAGTTATACTGGTTGACCCGGNAG TCAGNTTCATGCGATTCCNATATCTGC GC TG ] [+] EMBL CD142670 [ TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGANAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCNATATCTGC GC TG ] [+] EMBL CD180367 [ TCAAGTTTTACATGGTTAGAGGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTA TT TGAAAAGTTATACAGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TG ] [+] EMBL CD142733 [ TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCGTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGCTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTTCAATATCTGC GC Tn ] [+] EMBL CD142696 [ TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTTATTT TGAAAAG TATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TG ] [-] EMBL CD180411 [ CAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTCTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCATACAGCCGTTCATTCGTGAATAGCTAGAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGATGCTCCTCATC ] [-] EMBL CD123825 [ CAAGTTTTACAGGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTATACGCTGCTCCTCATCCTCGTCATAAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGTTTAGCTGCCTCGTCCctggctt ] [-] EMBL CD123759 [ CAAGTTTTACAGGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGGA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGTTTAGCTGCCTCGTCCAg ] [-] EMBL CD123763 [ CAAGTTTTACAGGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCCGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGT ] [-] EMBL CD180341 [ CAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTAGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGT ] [-] EMBL CD123815 [ CAAGTTTTACAGGGTTAGAAGGATACTGGTTATGATTG GATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCC TTCGTTCTTGAATAGCTA AAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCTGTTTCATGCGATTCCAATATCTGC GC TGT ] [+] EMBL CD124461 [ GTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGTTTAGCTGCCTCGTCCAACAATGCTGTAGTAGGTTGACTGATGACAACAACAGTATAGACATTGTGTACAACTGAGTGGTTTGTACCAACGTCGTCACTCGGTACAGAGATAAAATTACTGTCCTTTGCCAACAACTGTGACTTATTCTCTTCGAGATATGGAAGTGAAACTGCGGTTGCATGATAAAAGTCTATCGGTGGGCATCCAGGGATACCCTCGGAACATTGAACTTTGGTCCAGAACCAATTTACTTCAAACCATTCTTGACCAATATTCGGTGAACAACGAGTAAGTATCCATATATCTCTCGCCGGTCGACCATG] [+] EMBL CD163150 [ GTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAA TTATTT TGAAAAGTTATACTGTTTAACTCGG AGTTCAGTTTCATGCGATTCCAATATCTGC GC TGTTTAGCTGCCTCGTCCAACAATGCTGTAGTAGGTTGACTGATGACAACAACAGTATAGACATTGTGTACAACTGAGTGGTTTGTACCAACGTCGTCACTCGGTACAGAGATAAAATTACTGTCCTTTGCCAACAACTGTGACTTATTCTCTTCGAGATATGGAAGTGAAACTGCGGTTGCATGATAAAAGTCTATCGGTGGGCATCCAGGGATACCCTCGGAAC ] consensusID : consensus_10897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 992 fasta sequence [ACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAGATGTCCAGACCTGGACGATTGAAAAGTAGATGGATTATTGTGTCGTTGATACAAATCATTATCATTACGATTTTGCGATCCATTAATTAATGGTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTACAACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTTTATTTTCGGTGAAGTGGATTTTAGTGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCTACAGAAGAAATGTTAGATTATAAACTGTTATGAGAATATAGGCCTGGTTGTTTCAAATGAAAATGATAAAACAAACAGTTGAGTAATATGGATTTTTAATAACCATACAAAAAATTACAACCAAACAATGCGATTCGCGATATTAACTATGAGCTATCTAAAGAGAGTTACATACATTACTTTGAA] [-] EMBL CD081003 [ACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAGATGTCCAGACCTGGACGATTGAAAAGTAGATGGATTATTGTGTCGTTGATACAAATCATTATCATTACGATTTTGCGATCCATTAATTAATGGTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTACAACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGGAATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTTTATTTTCGGTGAAGTGGATTTTAGTGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCAC ] [+] EMBL CD085808 [ aTGGGAGTATATAATGTTGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCTACAGAAGAAATGTTAGATTATAAACTGTTATGAGAATATAGGCCTGGTTGTTTCAAATGAAAATGATAAAACAAACAGTTGAGTAATATGGATTTTTAATAACCATACAAAAAATTACAACCAAACAATGCGATTCGCGATATTAACTATGAGCTATCTAAAGAGAGTTACATACATTACTTTGAA] consensusID : consensus_10897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 670 fasta sequence [GTAAACTTATACTTTTTGGTAGTACATGAAATATCACTAAAAAAAATCCTCCGTTTATTATAATACATTAACAGTACCGATCGATATCAAGATGATGGGTATCAGGAAAAGAAGAAAACAACTATGGCGAGTTTAAATTTACAATTTTGGTAGAAAATAAAATCTGAATGAAAAGTAGACCACAGTAGAATCAAAGTGTAAGTAATGTAAGAATTCTTAGTTGATGAGGAGTTTATGTATGTGCATACTAAACACAACGTAACTGACTGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAGATGTCCTTGTGTAAGTGATCCATTTAATACTGAAGACCTGGACGATTGAAAAGTAGA] [+] EMBL CD074829 [GTAAACTTATACTTTTTGGTAGTACATGAAATATCACTAAAAAAAATCCTCCGTTTATTATAATACATTAACAGTACCGATCGATATCAAGATGATGGGTATCAGGAAAAGAAGAAAACAACTATGGCGAGTTTAAATTTACAATTTTGGTAGAAAATAAAATCTGAATGAAAAGTAGACCACAGTAGAATCAAAGTGTAAGTAATGTAAGAATTCTTAGTTGATGAGGAGTTTATGTATGTGCATACTAAACACAACGTAACTGACTGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAGATGTCCTTGTGTAAGTGATCCATTTAATACTGAAGACCTGGACGATTGAAAAGTAGA] [-] EMBL CD143301 [ GTGCATACTAAACACAACGTAACTGACTGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAG ] [-] EMBL CD143410 [ GTGCATACTAAACACAACGTAACTGACCGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGGAGCAAG ] [-] EMBL CD143291 [ GTGCATACTAAACACAACGTAACTGACTGTATGTACAGAATAGCGATATATTTACAACCACGGGATAATTTATGTACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAGCTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAAATATATAAAAATCTATACATGTTCACATGCTGCAAATAGCCTGGATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATAATTTACGCAAGGAGCAAG ] consensusID : consensus_10897#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGTACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATTTGGTGATTCATGCATATGAAGCATTTCAAAATCAAAATACTCATACCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTATTTTGAAAAGTTATACTGTTTAACTCGGAGTTCAGTTTCATGCGATTCCAATATCTGCGCTGTCTAG] [+] EMBL CD180290 [TCAAGTTTTACATGGTTAGAAGGATACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGTACGCCTAGATGACGGAAGTTGCAGGATCCCAGTCGATTCACGATTTGGTGATTCATGCATATGAAGCATTTCAAAATCAAAATACTCATACCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTATTTTGAAAAGTTATACTGTTTAACTCGGAGTTCAGTTTCATGCGATTCCAATATCTGCGCTGTCTAG] consensusID : consensus_10897#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [GAACTTGGGTNTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGGTGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTATTTTGAAAAGTTATACTGTTTAACTCGGAGGTCAGTTTCATGCGATTCCCATATATTGGCGTGG] [-] EMBL CD123828 [GAACTTGGGTNTGATGGAAACGATCGAGCAAATGATGATGCATTAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAGCTTCAAGTCTTCGTGCACGTCTGTTATTCGCACGCCTAGGTGACGGAAGTTGCAGGATCCCAGTCGATTCACGATCAGTGATATCAGTTGAATGAGAGTGTTTACGCTGCTCCTCATCCTCGTCATTAGCATCATCATCTGACGTACGAGAATCTTGACCTACCGAATTATTTTGAAAAGTTATACTGTTTAACTCGGAGGTCAGTTTCATGCGATTCCCATATATTGGCGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 ------------------------------------------------------------ consensus_10897#1 ACATTTTGTGAACCAATACACATTGGGAAAACTAAACTCATTGTACTACAGTATATAAAG 60 consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 ------------------------------------------------------------ consensus_10897#1 CTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAA 120 consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 ------------------------------------------------------------ consensus_10897#1 ATATATAAAAATCTATCAATCAAAATAAACAATTGCCAAATTAAATTATAGTACCAGCAA 180 consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 ------------------------------------------------------------ consensus_10897#1 GTGCACGTGCGCGAAGAACAAAAAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTAT 240 consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 ----------------------------------------------------AGTAGATG 8 consensus_10897#1 CTGGTGAATGATTTACGCAAGGAGCAAGATGTCCAGACCTGGACGATTGAAAAGTAGATG 300 consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 GATTATTGTGTCGTTGATACGAATCATTATCATTACGATTNTGCGATCCATTAATTAATG 68 consensus_10897#1 GATTATTGTGTCGTTGATACAAATCATTATCATTACGATTTTGCGATCCATTAATTAATG 360 consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 GTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGTCAGTCATACCACCAA 128 consensus_10897#1 GTTGAAATGTATTTACATTTTCATTTGGTCTAACATCATCTGAGT--------------- 405 consensus_10897#2 --------------GTAAACTTATACTTTTTGGTAGTACATGAAA------TATCACTAA 40 consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 AAAGAAATAAACTACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGG 188 consensus_10897#1 ----------ACAACCATGACCAAAAGCACATGAAAAACCTAAGCATTCAGGTGGTGCGG 455 consensus_10897#2 AAAAAATCCTCCGTTTATTATAATACATTAACAGTACCGATCGATATCAAGATGATGGGT 100 consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 AATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTCTATTCT 248 consensus_10897#1 AATAAAGATCTAGATAATTTTGTTTGACAGGTACCAACCAATCACCTTTAGCTTTATTTT 515 consensus_10897#2 ATCAGGAAAAGAAGAAAACAACTATGGCGAGTTTAAATTTACAATTTTGGTAGAAAATAA 160 consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 CGGTGAAGTGGATTTTAGTTGCAGAATTATATTAGACATCAGAATGGGAGTATATAATGT 308 consensus_10897#1 CGGTGAAGTGGATTTTAGT--------------------------GGGAGTATATAATGT 549 consensus_10897#2 AATCTGAATGAAAAGTAGAC-------------------CACAGTAGAATCAAAGTGTAA 201 consensus_10897#3 -----------------------------------TCAAGTTTTACATGGTTAGAAGGAT 25 consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 TGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGAT 368 consensus_10897#1 TGAGTGTATACAGAGCCAAAGGACGATAAGCACATTCAAGTTTTACATGGTTAGAAGGAT 609 consensus_10897#2 GTAATGTAAGAATTCTTAGTTGATGAGGAGTTTATGTATGTGCATACTAAACACAACGTA 261 consensus_10897#3 ACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCAT 85 consensus_10897#4 -----------------GAACTTGGGTNTGATGGAAACGATCGAGCAAATGATGATGCAT 43 consensus_10897#0 ACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCAT 428 consensus_10897#1 ACTGGTTATGATTGGATGAACTTTGGTTTGATGGAAACGATCGAGCAAATGATGATGCAT 669 consensus_10897#2 ACTGACTGTATGTACA-GAATAGCGATATATTTACAACCACGGGATAATTTATG-TACAT 319 *** * * * * *** * * ** * *** * *** consensus_10897#3 TAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAG 145 consensus_10897#4 TAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAG 103 consensus_10897#0 TAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAG 488 consensus_10897#1 TAGCCCCATTAGGAATCAGGTTACGTGATCCAAACAGCCTTCGTTCTTGAATAGCTAAAG 729 consensus_10897#2 TTTGTGAACCAATA--CACATTGGGAAAACTAAAC--TCATTGTACTACAGTATATAAAG 375 * * * * ** ** * * * **** * * ** ** * ** ***** consensus_10897#3 CTTCAAGTCTTCGTGCACGTCT---GTTATTCGTACGCCTAGATGACGGAAGTTGCAGGA 202 consensus_10897#4 CTTCAAGTCTTCGTGCACGTCT---GTTATTCGCACGCCTAGGTGACGGAAGTTGCAGGA 160 consensus_10897#0 CTTCAAGTCTTCGTGCACGTCT---GTTATTCGCACGCCTAGATGACGGAAGTTGCAGGA 545 consensus_10897#1 CTTCAAGTCTTCGTGCACGTCT---GTTATTCGCACGCCTAGATGACGGAAGTTGCAGGA 786 consensus_10897#2 CTAGAATAATTTAAACACAAAAAGAGATAATTATACATTTAGTTAGTGAACCCCATAAAA 435 ** ** ** *** * ** * ** *** * * * * * consensus_10897#3 TCCCAGTCGATTCACGATTTGGTGATTCATGCATATGAAGCATTTCAAAATCAAAATACT 262 consensus_10897#4 TCCCAGTCGATTCACGAT------------------------------------------ 178 consensus_10897#0 TCCCAGTCGATTCACGAT------------------------------------------ 563 consensus_10897#1 TCCCAGTCGATTCACGATCTACAGAAGAA------------------------------- 815 consensus_10897#2 ATATATAAAAATCTATACATGTTCACATGCT--------GCAAATAGCCTGGATCAATCA 487 * * ** * consensus_10897#3 CATACCAGTGATATCAGTTGA-ATGAGAGTGTTTAC----GC-TGCTCCTCATCCTCGTC 316 consensus_10897#4 -----CAGTGATATCAGTTGA-ATGAGAGTGTTTAC----GC-TGCTCCTCATCCTCGTC 227 consensus_10897#0 -----CAGTGATATCAGTTGA-ATGAGAGTGTTTAC----GC-TGCTCCTCATCCTCGTC 612 consensus_10897#1 -ATGTTAG-ATTATAAACTGTTATGAGAATATAGGCCTG-GT-TGTTTCAAATGAAAATG 871 consensus_10897#2 AAATAAACAATTGCCAAATTAAATTATAGTACCAGCAAGTGCACGTGCGCGAAGAACAAA 547 * * * * ** * * * * * * * consensus_10897#3 ATTAGCATCATCATCTGACGTACGAGAAT---CTTGACCTACCGAATTATTTTGAAAAGT 373 consensus_10897#4 ATTAGCATCATCATCTGACGTACGAGAAT---CTTGACCTACCGAATTATTTTGAAAAGT 284 consensus_10897#0 ATTAGCATCATCATCTGACGTACGAGAAT---CTTGACCTACCGAATTATTTTGAAAAGT 669 consensus_10897#1 AT-AAAACAAACAGTTGAGTAATATGGAT---TTTTAATAACCATACAAAAAATTACAAC 927 consensus_10897#2 AAACTGAGCGGTACCTGGAGGATAGGGATAAATTGTATCTGGTGAATGATTTACGCAAGG 607 * * * ** * * ** * * * * * consensus_10897#3 TATACTGTTTAACTCG-GAGTTCAGTTTCATGCGATTCC-AATATCT--GCGCTGTCTAG 429 consensus_10897#4 TATACTGTTTAACTCG-GAGGTCAGTTTCATGCGATTCC-CATATATTGGCGTGG----- 337 consensus_10897#0 TATACTGTTTAACTCG-GAGTTCAGTTTCATGCGATTCC-AATATCT--GCGCTGTTTAG 725 consensus_10897#1 CAAACAATGCGATTCGCGATATTAACTATGAGCTATCTA-AAGAGAGTTACATACATTAC 986 consensus_10897#2 AGCAAGATGTCCTTGTGTAAGTGA--TCCATTTAATACTGAAGACCTGGACGATTGAAAA 665 * * * * * * * ** * * * consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 CTGCCTCGTCCAACAATGCTGTAGTAGGTTGACTGATGACAACAACAGTATAGACATTGT 785 consensus_10897#1 TTTGAA------------------------------------------------------ 992 consensus_10897#2 GTAGA------------------------------------------------------- 670 consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 GTACAACTGAGTGGTTTGTACCAACGTCGTCACTCGGTACAGAGATAAAATTACTGTCCT 845 consensus_10897#1 ------------------------------------------------------------ consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 TTGCCAACAACTGTGACTTATTCTCTTCGAGATATGGAAGTGAAACTGCGGTTGCATGAT 905 consensus_10897#1 ------------------------------------------------------------ consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 AAAAGTCTATCGGTGGGCATCCAGGGATACCCTCGGAACATTGAACTTTGGTCCAGAACC 965 consensus_10897#1 ------------------------------------------------------------ consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------------------------------------------------ consensus_10897#4 ------------------------------------------------------------ consensus_10897#0 AATTTACTTCAAACCATTCTTGACCAATATTCGGTGAACAACGAGTAAGTATCCATATAT 1025 consensus_10897#1 ------------------------------------------------------------ consensus_10897#2 ------------------------------------------------------------ consensus_10897#3 ------------------- consensus_10897#4 ------------------- consensus_10897#0 CTCTCGCCGGTCGACCATG 1044 consensus_10897#1 ------------------- consensus_10897#2 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||