cluster # 10904

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Schistosoma mansoni
cluster # 10904 cluster # 10904 Sequences # 24 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10904#0 length = 1914 sequences # 23

consensus_10904#1 length = 639 sequences # 1

consensusID : consensus_10904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 23
consensus length = 1914
fasta sequence

                              [GCTAAGACAGAAATAGGAAAATAACTAGACACTAACCTCATAATCGATAAGCATATGAGTTGAAACGGTTTCTCACATGTTCACAATTAAATGACGACAAAATAAATAAAAGCCTTACTGATAATTACTGAATCTATAACTATACTCTTGAGAAGCAATATTCTAACCCTGGGTAGAATATACTGAGGATGGTAACGACACTACACAAATCTACTCAACTAACCCTAGACAATCATGCGTCAGTAAACTAGGTCTAAGCAAAGTCAGTTGTAAATGAAAGATCCTGCGGAGCAAATAGTGTTAGTAGTCTGCTAATTACTGTGCTTAAGTGAAGTGAGCAAAAACGTAGCTAAACTAAGTTCAGAGCTCCGAGGTTATCAGAATATCGTTGTAATTAAGTAACTAAATAAAAGAAAAAATATATCCCCCAATCCTAAATGTGTATGACAAGCTTGGTCTCAATTATACGTTTTAAGAAGAAAGCCAAATGAATAGTTATATAACTCAACGACCACGATTAACAAACTTTCAATGTCACAACTAAGTCATCACGGATCCACAAAACTTTAGTACTCATTCTGATCCTCATCATTTCTCTATGTATGCTAGCAAATACATATAGATGTTGCTTGGTATTAGTTAGTACTGAAAGCCCGGGTTGCGAAAACAGTCAGAGATGTTGGGTAATGTTTTCATCTAAACTAACAGTGAAAACGGGAAGAAAAATCAGCGAATTATATACTAGCATAAAAGGTTGTGGTACTCGTCCTTATCAGAAATAAAAGTCCGCAAGGTCGAAGTAACAGTTTAAAATGTACTACATTGTCTTACCAAGAGTAGCCACATATTTACTGAGGATTTCATTCAAAACACTATACTCTGAAGTCAAATCAACTGATAGAATGAAGACGTTGTTATTTCTATCTGTTCCACATTTTATAGTTTCCCGTGCAGACTGAAGTTTCTTCAGGTCTCGAGCGACGATTGTTACATCAGCACCGGCTCGGTAGAACAGCTTAGCGAGAGATAGACCGATCCCGCTTGATCCACCAGNTATTAAGACATTGAAGCCATGAAATGACTTTTTACTAACACGAATGTTGTTTCGCCAATTTAATAACAGGGCAGCAGNCAATACGAAGGCTGTAGCGGGTACGATNANAATCTACAAACGACTCAAAGTCAGCTAAATTCCATANCAGTTCAAAAAGTCGAAATTAAGAAATATTTTGTATTTGGACAAACTATGTTTTGAGTTTCAGACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTATTTTCATTGTTTTTAAAAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCCTTCAGACTCCTATAAT-GCATACGTAGGCCCTCGTGCCGAATTNTGGCCTCGGAG]

[+] EMBL CD134883             [GCTAAGACAGAAATAGGAAAATAACTAGACACTAACCTCATAATCGATAAGCATATGAGTTGAAACGGTTTCTCACATGTTCACAATTAAATGACGACAAAATAAATAAAAGCCTTACTGATAATTACTGAATCTATAACTATACTCTTGAGAAGCAATATTCTAACCCTGGGTAGAATATACTGAGGATGGTAACGACACTACACAAATCTACTCAACTAACCCTAGACAATCATGCGTCAGTAAACTAGGTCTAAGCAAAGTCAGTTGTAAATGAAAGATCCTGCGGAGCAAATAGTGTTAGTAGTCTGCTAATTACTGTGCTTAAGTGAAGTGAGCAAAAACGTAGCTAAACTAAGTTCAGAGCTCCGAGGTTATCAGAATATCGTTGTAATTAAGTAACTAAATAAAAGAAAAAATATATCCCCCAATCCTAAATGTGTATGACAAGCTTGGTCTCAATTATACGTTTTAAGAAGAAAGCCAAATGAATAGTTATATAACTCAACGACCACGATTAACAAACTTTCAATGTCACAACTAAGTCATCACGGATCCACAAAACTNTAGTACTCATTCTGATCCTCATCATTTCTCTATGTATGCTAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD192432             [                    ATAACTAGACACTAACCTCATAATTGATAAGCATATGAGTTGAAACGGTTTCTCACATGTTCACAATTAAATGACGACAAAATAAATAAAAGCCTTACTGATAATTACTGAATCTATAACTATACTCTTGAGAAGCAATATTCTAACCCTGGGTAGAATATACTGAGGATGGTAACGACACTACACAAATCTACTCAACTAACCCTAGACAATCATGCGTCAGTAAACTAGGTCTAAGCAAAGTCAGTTGTAAATGAAAGATCCTGCGGAGCAAATAGTGTTAGTAGTCTGCTAATTACTGTGCTTAAGTGAAGTGAGCAAAAACGTAGCTAAACTAAGTTCAGAGCTCCGAGGTTATCAGAATATCGTTGTAATTAAGTAACTAAATAAAAGAAAAAATATATCCCCCAATCCTAAATGTGTATGACAAGCTTGGTCTCAATTATACGTTTTAAGAAGAAAGCCAAATGAATAGTTATATAACTCAACGACCACGATTAACAAACTTTCAATGTCACAACTAAGTCATCACGGATCCACAAAACTTTAGTACTCATTCTGATCCTCATCATTTCTCTATGTATGCTAGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD202062             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTTATATAACTCAACGACCACGATTAACAAACTTTCAATGTCACAACTAAGTCATCACGGATCCACAAAACTTTAGTACTCATTCTGATCCTCATCATTTCTCTATGTATGCTAGCAAATACATATAGATGTTGCTTGGTATTAGTTAGTACTGAAAGCCCGGGTTGCGAAAACAGTCATAGATGTTGGGT GTGTTTTCATCTAAACTAACAGTGAAAACGGGAAGAAAAATCAGCGAATTATATACTAGCATAAAAGGTTGTGGTACTCGTCCTTATCAGAAATAAAAGTCCGCAAGGTCGAAGTAACAGTTTAAAATGTACTACATTGTCTTACCAAGAGTAGCCACATATTTACTGAGGATTTCATTCAAAACACTATACTCTGAAGTCAAATCAACTGATAGAATGAAGACGTTGTTATTTCTATCTGTTCCACATTTTATAGTTTCCCGTGCAGACTGAAGTTTCTTCAGGTCTCGAGCGACGATTGTTACATCAGCACCGGCTCGGTAGAACAGCTTAGCGAGAGATAGACCGATCCCGCTTGATCCACCAGNTATTAAGACATTGAAGCCATGAAATGACTTTTTACTAACACGAATGTTGTTTCGCCAATTTAATAACAGGGCAGCAGNCAATACGAAGGCTGTAGCGGGTACGATNANAATCTACAAACGACTCAAAGTCAGCTAAATTCCATANCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD095274             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGAGATGTTGGGTAATGTTTTCATCTAAACTAACAGTGAAAACGGGAAGAAAAATCAGCGAATTATATACTAGCATAAAAGGTTGTGGTACTCGTCCTTATCAGAAATAAAAGTCCGCAAGGTCGAAGTAACAGTTTAAAATGTACTACATTGTCTTACCAAGAGTAGCCACATATTTACTGAGGATTTCATTCAAAACGCTATACTCTGAAGTCAAATCAACTGATAGAATGAAGACGTTGTTATTTCTATCTGTTCCACATTTTATAGTTTCCCGTGCAGACTGAAGTTTCTTCAGGTCTCGAGCGACGATTGTTACATCAGCACCGGCTCGGTAGAACAGCTTAGCGAGAGATAGACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD095106             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGAGATGTTGGGTAATGTTTTCATCTAAACTAACAGTGAAAACGGGAAG AAAATCAGCGAATTATATACTAGCATAAAAGGTTGTGGTACTCGTCCTTATCAGAAATAAAAGTCCGCAAGGTCGAAGTAACAGTTT AAATGTACTACATTGTCTTACCAAGAGTAGCCACATATTTACTGAGGATTTCATTCAAAACACTATACTCTGAAGTCAAATCAACTGATAGAATGAAGACGTTGTTATTTCTATCTGTTCCACATTTTATAGTTTCCCGTGCAGACTGAAGTTTCTTCAGGTCTCGAGCGACGATTGTTACATCAGCACCGGCTCGGTAGAACAGCTTAGCGAGAGATAGACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD094993             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGATGTTGGGTAATGTTTTCATCTAAACTAACAGTGAAAACGGGAAGAAAAATCAGCGAATTATATACTAGCATAAAAGGTTGTGGTACTCGTCCTTATCAGAAATAAAAGTCCGCAAGGTCGAAGTAACAGTTTAAAATGTACTACATTGTCTTACCAAGAGTAGCCACCTATTTACTGAGGATTTCATTCAAAACACTATACTCTGAAGTCAAATCAACTGATAGAATGAAGACGTTGTTATTTCTATCTGTTCCACATTTTATAGTTTCCCGTGCAGACTGAAGTTTCTTCAGGTCTCGAGCGACGATTGTTACATCAGCACCGGCTCGGTAGAACAGCTTAGCGAGAGATAGACCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD153759             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCTGTTCCACATTTTATAGTTTCCCGTGCAGACTGAAGTTTCTTCAGGTCTCGAGCGACGATTGTTACATCAGCACCGGCTCGGTAGAACAGCTTAGCGAGAGATAGACCGATCCCGCTTGACCCACCAGTAATTAAGACATTGAAGCCATGAAATGACTTTTTACTAACACGATTGTTGTTTCGCCAATTTAATAACAGGCAAGCAGCAAATACGAAGGCTGTAGCGGTAACGATAAAAATCTACAAACGACTCAAAGTCAGCTAAATTCCATACAAGTTCAAAAAGTCGAAATTAAGAAATATTTTGTATTTGGACAAACTATGTTTTGAGTTTCAGACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTATTTTCATTGTTTTTACAAGAAGTGGAAGGTTCGTACTTCTCTAGTACAGGTACATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD081383             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTGTATTTGGACAAACTATG TTTGAGTTTCAGACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTATTTTCATTGTTTTTAAAAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCCTTCAGACTCCTATAAT GCATACGTAGGCCCTCGTGCCGAATTNTGGCCTCGGAG]
[+] EMBL CD075217             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTGTATTTGGACAAACTATGTTTTGAGTTTCAGACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTATTTTCATTGTTTTTAAAAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAGCCGC                                                              ]
[+] EMBL CD073106             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTGTATTTGGACAAACTATGTTTTGAGTTTCAAACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTATTTTCATTGTTTTTAAAAAAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAAATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAAACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAACTTTTTTGCAAAGTGTATATCACTTATGTG                                                                                                                                                                                                                                                                                             ]
[+] EMBL AW017283             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTGTATTTGGACAAACTATGTTTTGAGTTTCAGACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTATTTTCATTGGTTTTAAAAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGGTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACCAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAAT                                                                                                                                                                                                                                                                        ]
[-] EMBL BF936778             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACAAACTATGTTTTGAGTTTCAGACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTATTTTCATTGTTTTTAAAAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCCTTCAGACTCCTATAATGGCATACGT                              ]
[-] EMBL CD160194             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGAGTTTCAGACCATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACCAAGGTTATTTTCATTGTTTTTAAGAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGGATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCA                                                                                                                                                                                                                                        ]
[-] EMBL CD083409             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aAAAAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACA TCAGGAA  AATTTAGCCGCGAATTCCTTCctc                                                 ]
[-] EMBL AI975240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAAGGTTCGTACTTCTCTAGTAAAGGGAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCCTTCAGACTCCTATAAT GCATACGT                              ]
[+] EMBL CD178728             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTA                                                                   ]
[+] EMBL CD178925             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGGATGTAGTACACTGTAGACTTATATCCTCGACATCTANAGACATTCAGGAAATAATTTA                                                                   ]
[-] EMBL CD178546             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCTAGTAAAGGTAAATGAATAGAGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCCCTTGTGACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAG                                                                  ]
[-] EMBL CD192575             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTACATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTG                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AI068187             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATGAATTACGGCGTCCGAAGCCTCACATGCTTCGTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTCTATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGTGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATA                                                                                                      ]
[-] EMBL AI068155             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATA                                                                                                      ]
[-] EMBL CD078130             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAGCCGCGAATTC                                                        ]
[-] EMBL AI066974             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTNTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATA                                                                                                      ]




>consensus_10904#0
GCTAAGACAGAAATAGGAAAATAACTAGACACTAACCTCATAATCGATAAGCATATGAGT
TGAAACGGTTTCTCACATGTTCACAATTAAATGACGACAAAATAAATAAAAGCCTTACTG
ATAATTACTGAATCTATAACTATACTCTTGAGAAGCAATATTCTAACCCTGGGTAGAATA
TACTGAGGATGGTAACGACACTACACAAATCTACTCAACTAACCCTAGACAATCATGCGT
CAGTAAACTAGGTCTAAGCAAAGTCAGTTGTAAATGAAAGATCCTGCGGAGCAAATAGTG
TTAGTAGTCTGCTAATTACTGTGCTTAAGTGAAGTGAGCAAAAACGTAGCTAAACTAAGT
TCAGAGCTCCGAGGTTATCAGAATATCGTTGTAATTAAGTAACTAAATAAAAGAAAAAAT
ATATCCCCCAATCCTAAATGTGTATGACAAGCTTGGTCTCAATTATACGTTTTAAGAAGA
AAGCCAAATGAATAGTTATATAACTCAACGACCACGATTAACAAACTTTCAATGTCACAA
CTAAGTCATCACGGATCCACAAAACTTTAGTACTCATTCTGATCCTCATCATTTCTCTAT
GTATGCTAGCAAATACATATAGATGTTGCTTGGTATTAGTTAGTACTGAAAGCCCGGGTT
GCGAAAACAGTCAGAGATGTTGGGTAATGTTTTCATCTAAACTAACAGTGAAAACGGGAA
GAAAAATCAGCGAATTATATACTAGCATAAAAGGTTGTGGTACTCGTCCTTATCAGAAAT
AAAAGTCCGCAAGGTCGAAGTAACAGTTTAAAATGTACTACATTGTCTTACCAAGAGTAG
CCACATATTTACTGAGGATTTCATTCAAAACACTATACTCTGAAGTCAAATCAACTGATA
GAATGAAGACGTTGTTATTTCTATCTGTTCCACATTTTATAGTTTCCCGTGCAGACTGAA
GTTTCTTCAGGTCTCGAGCGACGATTGTTACATCAGCACCGGCTCGGTAGAACAGCTTAG
CGAGAGATAGACCGATCCCGCTTGATCCACCAGNTATTAAGACATTGAAGCCATGAAATG
ACTTTTTACTAACACGAATGTTGTTTCGCCAATTTAATAACAGGGCAGCAGNCAATACGA
AGGCTGTAGCGGGTACGATNANAATCTACAAACGACTCAAAGTCAGCTAAATTCCATANC
AGTTCAAAAAGTCGAAATTAAGAAATATTTTGTATTTGGACAAACTATGTTTTGAGTTTC
AGACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTAT
TTTCATTGTTTTTAAAAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAG
AGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTA
CATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGT
GCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTG
GATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATAT
CACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTT
TCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGT
ATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACA
CTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCC
TTCAGACTCCTATAATGCATACGTAGGCCCTCGTGCCGAATTNTGGCCTCGGAG

consensusID : consensus_10904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence

                              [GTTGGGACAACTTGTTTGGGTTCAGCAAAGATTTTAAATCCATTTTGAAGATCATTTTCAAGATAGGGTATTTTCTGGTTTTAAAGAAGGGAAGTTCGTCTTCTTTAGTAAGGTTAATGATAGAGNCATCATAATGTTCTAAAGCCCAGATAGATCGGAGAGTGGTGGCGACCTTCNAGTACATAAGGATGAATTACGGCGTCCGAAGCNTCACATGCTTCCNTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATTTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCCTTCAGACTCCTATAATGCATACGTAAGCTACAAACTAG]

[-] EMBL CD078642             [GTTGGGACAACTTGTTTGGGTTCAGCAAAGATTTTAAATCCATTTTGAAGATCATTTTCAAGATAGGGTATTTTCTGGTTTTAAAGAAGGGAAGTTCGTCTTCTTTAGTAAGGTTAATGATAGAGNCATCATAATGTTCTAAAGCCCAGATAGATCGGAGAGTGGTGGCGACCTTCNAGTACATAAGGATGAATTACGGCGTCCGAAGCNTCACATGCTTCCNTGCAAAGACGTCCATTGTGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTGGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATATCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTTTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGTATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTACACTGTAGACTTATATCCTCGACATTTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCCTTCAGACTCCTATAATGCATACGTAAGCTACAAACTAG]




>consensus_10904#1
GTTGGGACAACTTGTTTGGGTTCAGCAAAGATTTTAAATCCATTTTGAAGATCATTTTCA
AGATAGGGTATTTTCTGGTTTTAAAGAAGGGAAGTTCGTCTTCTTTAGTAAGGTTAATGA
TAGAGNCATCATAATGTTCTAAAGCCCAGATAGATCGGAGAGTGGTGGCGACCTTCNAGT
ACATAAGGATGAATTACGGCGTCCGAAGCNTCACATGCTTCCNTGCAAAGACGTCCATTG
TGCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCT
GGATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATA
TCACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTT
TTCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAG
TATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTAC
ACTGTAGACTTATATCCTCGACATTTAAAGACATTCAGGAAATAATTTAGCCGCGAATTC
CTTCAGACTCCTATAATGCATACGTAAGCTACAAACTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10904#0      GCTAAGACAGAAATAGGAAAATAACTAGACACTAACCTCATAATCGATAAGCATATGAGT 60
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      TGAAACGGTTTCTCACATGTTCACAATTAAATGACGACAAAATAAATAAAAGCCTTACTG 120
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      ATAATTACTGAATCTATAACTATACTCTTGAGAAGCAATATTCTAACCCTGGGTAGAATA 180
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      TACTGAGGATGGTAACGACACTACACAAATCTACTCAACTAACCCTAGACAATCATGCGT 240
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      CAGTAAACTAGGTCTAAGCAAAGTCAGTTGTAAATGAAAGATCCTGCGGAGCAAATAGTG 300
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      TTAGTAGTCTGCTAATTACTGTGCTTAAGTGAAGTGAGCAAAAACGTAGCTAAACTAAGT 360
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      TCAGAGCTCCGAGGTTATCAGAATATCGTTGTAATTAAGTAACTAAATAAAAGAAAAAAT 420
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      ATATCCCCCAATCCTAAATGTGTATGACAAGCTTGGTCTCAATTATACGTTTTAAGAAGA 480
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      AAGCCAAATGAATAGTTATATAACTCAACGACCACGATTAACAAACTTTCAATGTCACAA 540
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      CTAAGTCATCACGGATCCACAAAACTTTAGTACTCATTCTGATCCTCATCATTTCTCTAT 600
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      GTATGCTAGCAAATACATATAGATGTTGCTTGGTATTAGTTAGTACTGAAAGCCCGGGTT 660
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      GCGAAAACAGTCAGAGATGTTGGGTAATGTTTTCATCTAAACTAACAGTGAAAACGGGAA 720
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      GAAAAATCAGCGAATTATATACTAGCATAAAAGGTTGTGGTACTCGTCCTTATCAGAAAT 780
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      AAAAGTCCGCAAGGTCGAAGTAACAGTTTAAAATGTACTACATTGTCTTACCAAGAGTAG 840
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      CCACATATTTACTGAGGATTTCATTCAAAACACTATACTCTGAAGTCAAATCAACTGATA 900
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      GAATGAAGACGTTGTTATTTCTATCTGTTCCACATTTTATAGTTTCCCGTGCAGACTGAA 960
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      GTTTCTTCAGGTCTCGAGCGACGATTGTTACATCAGCACCGGCTCGGTAGAACAGCTTAG 1020
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      CGAGAGATAGACCGATCCCGCTTGATCCACCAGNTATTAAGACATTGAAGCCATGAAATG 1080
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      ACTTTTTACTAACACGAATGTTGTTTCGCCAATTTAATAACAGGGCAGCAGNCAATACGA 1140
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      AGGCTGTAGCGGGTACGATNANAATCTACAAACGACTCAAAGTCAGCTAAATTCCATANC 1200
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      AGTTCAAAAAGTCGAAATTAAGAAATATTTTGTATTTGGACAAACTATGTTTTGAGTTTC 1260
consensus_10904#1      ---------------------------------GTTGGGACAACTTGT---TTGGGTTC- 23
                                                         ** ******  * *   *** ***  

consensus_10904#0      AGACAATAGATTCTTAAATATCATCATCTGAAAGATCATATTCTACAAGACTAAGGTTAT 1320
consensus_10904#1      -AGCAA-AGATT-TTAAAT----CCATTTTGAAGATCATTTTC---AAGAT--AGGGTAT 71
                          *** ***** ******     *** *  ******** ***   ****   *** ***

consensus_10904#0      TTTCATTGTTTTTAAAAGAAGTGGAAGGTTCGTACTTCTCTAGTAAAGGTAAATGAATAG 1380
consensus_10904#1      TTTC--TGGTTTTAAAGAA---GGGAAGTTCGT-CTTCTTTAGTAA-GGTTAATGA-TAG 123
                       ****  ** *******  *   ** * ****** ***** ****** *** ***** ***

consensus_10904#0      AGACATCATAATGTTCTGAAAGCCCAGATAGATCGGAGAGTGGTTGGCGACCCTTCAGTA 1440
consensus_10904#1      AGNCATCATAATGTTCT-AAAGCCCAGATAGATCGGAGAGTGGT-GGCGACCTTCNAGTA 181
                       ** ************** ************************** ******* *  ****

consensus_10904#0      CATAAGGATGAATTACGGCGTCCGAAGCCTCACATGCTTCCTTGCAAAGACGTCCATTGT 1500
consensus_10904#1      CATAAGGATGAATTACGGCGTCCGAAGCNTCACATGCTTCCNTGCAAAGACGTCCATTGT 241
                       **************************** ************ ******************

consensus_10904#0      GCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTG 1560
consensus_10904#1      GCAAGTAATTGTTCTTTATCACATCAAGAGAGCAAAGAATCGACTTTATCTGATGATCTG 301
                       ************************************************************

consensus_10904#0      GATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATAT 1620
consensus_10904#1      GATACGAAGTACATGTAGCCTGTCCCAGCAAACTTTCTAGCTTCTTTGCAAAGTGTATAT 361
                       ************************************************************

consensus_10904#0      CACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTT 1680
consensus_10904#1      CACTTATGTGCTTGAATGCAGCATCACAAATATTGCGTTTGTGTGTAGTAACTTTGTTTT 421
                       ************************************************************

consensus_10904#0      TCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGT 1740
consensus_10904#1      TCAAGGTGACCAATCTATTCAGTTGACCGAGTTTGGCTCTCTTGTAACCAGTCATTAAGT 481
                       ************************************************************

consensus_10904#0      ATGCGAATGAAATACTCAATATCAGACAGACATTGATCCTTACTTCAAGAATGTAGTACA 1800
consensus_10904#1      ATGCGAATGAAATACTCAATATCAGACCGACATTGATCCTTACTTCAAGAATGTAGTACA 541
                       *************************** ********************************

consensus_10904#0      CTGTAGACTTATATCCTCGACATCTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCC 1860
consensus_10904#1      CTGTAGACTTATATCCTCGACATTTAAAGACATTCAGGAAATAATTTAGCCGCGAATTCC 601
                       *********************** ************************************

consensus_10904#0      TTCAGACTCCTATAATGCATACGTAGGCCCTCGTGCCGAATTNTGGCCTCGGAG 1914
consensus_10904#1      TTCAGACTCCTATAATGCATACGTAAGCTA-CAAACTAG--------------- 639
                       ************************* **   *   *