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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1419 fasta sequence
[TTGTAATTTTTTATCCGTATTTTTATCACTGCAGGAAGCAGATGGATCAGTAGAAGATAACTGTTTATTACAATCAGATGTAACATCATCATTATGCTCAAGTTGTTCACAAGAAATAATAGGCAAATCAGTTGACTTTGAAACATCATGAG-CTGTGGAACTGACTGATGTGAAACTGAATAATTCATATGTTTATTGTTCTCTTCAACAACTTCACATAATGTTCGCAAAAATGCCAACATTGCAATTATACGACCCCAGTTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGAAATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCAGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGATATACAAGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTAGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATTATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGATTGATTGAAATATTTGAATGATTGGTTAGGTGAATGTCAGTAGCTGATTATTGNAGCATCATATATCATTATAGATTATCAGAGACATATCATGGGCGCAGATACTAGTAGAAGTGGTCGATGGTGACAGGAAATCNACACACCATGTCAGATAGCCATTATTGAGCTAGGGATTGATTGGAACAATTTGATCGTGGTAGGGACTTTCAGCGTAATTGCTGACCGCAAAAAGATGGCGAGAAGAATT]
[+] EMBL CD195936 [TTGTAATTTTTTATCCGTATTTTTATCACTGCAGGAAGCAGATGGATCAGTAGAAGATAACTGTTTATTACAATCAGATGTAACATCATCATTATGCTCAAGTTGTTCACAAGAAATAATAGGCAAATCAGTTGACTTTGAAACATCATGAGACTGTGGAACTGACTGATGTGAAACTGAATAATTCATATGTTTATTGTTCTCTTCAACAACTTCACATAATGTTCGCAAAAATGCCAACATTGCAATTATACGACCCCAGGTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGAAATTGACATCGAGCCATTTCTAca ]
[+] EMBL CD113775 [ t ggtgccAAGTGAGAGATGTGAAACTGAATAATCCATATGTTTATTGTTCTCTTCAACAACTTCACATAATGTTCGCAAAAATGCCAACATTGCAATTATACGACCCCAGTTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGAAATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTACCATTAACACTAATCATTGTCGTTTCGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCAGCGAGATTTCTGGCGCATAGAATTAATCGTGCCGATATCAATGTTGACGGAACTGA ]
[-] EMBL CD195683 [ AGTTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGAAATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATA ]
[-] EMBL CD124317 [ CAAGAAATATTTCTTCTAGACNACTATGAAATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCAGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGATATACAAGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTAGGTTGAATTTCATTTTGAGGCTGAGATGAACTACTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTG ]
[-] EMBL CD195617 [ ACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATA ]
[+] EMBL CD165831 [ CATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTAGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATACCTAGACTCAAAATGGTCAGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGATATACAAGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTAGGTTGAATTTCATTTCGAGGCTGAGATGAACTATTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTAT ]
[-] EMBL CD195816 [ CGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCCGTACAACTTTGATCATCTATATTATGATTAATA ]
[+] EMBL CD144694 [ GCAGATGGTTCATTACTTGTAGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATTATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGATTGATTGAAATATTTGAATGATTGGTTAGGTGAATGTCAGTAGCTGATTATTGNAGCATCATATATCATTATAGATTATCAGAGACATATCATGGGCGCAGATACTAGTAGAAGTGGTCGATGGTGACAGGAAATCNACACACCATGTCAGATAGCCATTATTGAGCTAGGGATTGATTGGAACAATTTGATCGTGGTAGGGACTTTCAGCGTAATTGCTGACCGCAAAAAGATGGCGAGAAGAATT]
consensusID : consensus_10907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1065 fasta sequence
[ATTCTGCTTATTTACATATGGGTGATTCTCTGTTTCACAATTCGTCTGCGGCTCCAGATGATGAATATGATTATTTGATTAAACTTTTAGCCCTTGGAGATAGCAATGTTGGGAAAACAAGCTTATTATATCAGTATACTGATAATATTTTCAATCCACGATTTACAACAACTGTTGGTGTAGATTTTCGTCAAAAACGTTTAGTTCGGGAAAGTCGTGATTCTGAAGGTCTTTTAGGACCTAAACAACGCTTGCATTTACAGTTATGGGATACGGCTGGACAAGAACGTTATCGAAGTTTATGCACTGTGTTTTTACGTGATGCAATGGGATTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTTTAAAAATTGTCATGCTTGGATGAATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTTGTGATCTCAATGTACCTTATATTGAAACAAGTGCAGCAACTGGTTATCAAGTTAATGATGCTGTGGATCGTTTATTAGATTTAGTAATGACAAGAATTGAAGCCTCAGTAACTAAAGCACGTATCCATGGTAATACAGAAGGTACAGCAAATTTGAAAAAACCTACTACTAAATCAAATTGTAATTGTTAATAATTTATGTTTATTTGAATGGATTTTGATGATGACTTATCATCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTCTACTGCATAAACTTGTCCTGTCAACATCTTGTTATCCTGTTGTGTTGTATTCTCTATGTATATGTGTGTACGCTGTGCTATCTCCCCATGTTTGTGAAGATGAACTAACTGATCAACTATAGCCTAATTGTGCCAACAACATACTTTTAATTGCTTTACTCTGTTCCTATTAATGATTGTGATTCGGAGGATGGAGAAAGAGAGGGTATCCATTCGATGTGTTATTATCCAATTTATGGTAACCATAATTCTGTATGTGTTTGTTTGTGTGTGTGN]
[+] EMBL AI976951 [ATTCTGCTTATTTACATATGGGTGATTCTCTGTTTCACAATTCGTCTGCGGCTCCAGATGATGAATATGATTATTTGATTAAACTTTTAGCCCTTGGAGATAGCAATGTTGGGAAAACAAGCTTATTATATCAGTATACTGATAATATTTTCAATCCACGATTTACAACAACTGTTGGTGTAGATTTTCGTCAAAAACGTTTAGTTCGGGAAAGTCGTGATTCTGAAGGTCTTTTAGGACCTAAACAACGCTTGCATTTACAGTTATGGGATACGGCTGGACAAGAACGTTATCGAAGTTTATGCACTGTGTTTTTACGTGATGCAATGGGATTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTNTAAAAATTGTCATGCTTGGATGAANTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTTGTGATCTCAATGTACCTTATATTGA ]
[+] EMBL CD193042 [ TTGGTGTAGATTTTCGTCAAAAACGTTTAGTTCGGGAAAGTCGTGATTCTGAAGGTCTTTTAGGACCTAAACAACGCTTGCATTTACAGTTATGGGATACGGCTGGACAAGAACGTTATCGAAGTTTATGCACTGTGTTTTTACGTGATGCAATGGGATTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTTTAAAAATTGTCATGCTTGGATGAATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACG ]
[+] EMBL CD128385 [ ACTTTATCGAAG TTATG ACTGTGTTTTTACGTGATGCAATGGGATTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTTTAAAAATTGTCATGCTTGGATGAATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTCGTGATCTCAATGTACCTTATATTGAAACAAGTGCAGCAACTGGTTATCAAGTTAATGATGCTGTGGATCGTTTATTAGATTTAGTAATGACAAGAATTGAAGC ]
[+] EMBL CD080215 [ AAAATTGTCATGCTTGGATGAATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTTGTGATCTCAATGTACCTTATATTGAAACAAGTGCAGCAACTGGTTATCAAGTTAATGATGCTGTGGATCGTTTATTAGATTTAGTAATGACAAGAATTGAAGCCTCAGTAACTAAAGCACGTATCCATGGTAATACAGAAGGTACAGCAAATTTGAAAAAACCTACTACTAAATCAAATTGTAATTGTTAATAATTTATGTTTATTTGAATGGATTTTGATGATGACTTATCATCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTCTACTGCATAAACTTGTCCTGTCAACATCTTGTTATCCTGTTGTGTTGTATTCTCTATGTATATGTGTGTACGCTGTGCTATCTCCCCATGTTTGTGAAGATGAACTAACTGATCAACTATAGCCTAATTGTGCCAACAACATACTTTTAATTGCTTTACTCTGTTCCTATTAATGATTGTGATTCGGAGGATGGAGAAAGAGAGGGTATCCATTCGATGTGTTATTATCCAATTTATGGTAACCATAATTCTGTATGTGTTTGTTTGTGTGTGTGN]
consensusID : consensus_10907#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 821 fasta sequence
[AGCCGTCATCAAGAACGTACACTGAACCATGCTGATCATCAATTAATTACTAATATTGGGAATCAATTATAGTTGTCAAGTATTGAATAACACACAGCACAAACATAAAGGAGGAGGGGTACCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAAGACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACCTATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGT-ATTAGTAGCAGTA-GTAGGTAAACAAAAATACGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTTTATTGAGATATTTTCACTGAGATTCATATAATGTATGG-AATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACG-ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT--ACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATTTTACAGGACATGGTTATGCTCTCTCTCTGTCTGTTTTTTCTTGGTCACGTACATAAACAAATGTCA-TGGTATAATAGAGGTCAATGTTCTAGAAATGTTTATTGGTAGAGTAGTCGTACAATATAAACGAAAGAGGTAATTTGACCACAACACACACACACAAACAAACACATACAGAATTATGGTTACCATAAATTGGATAATAACACATCGAATGGATACCCTCTCTTTCTCCATCCTCCGAATCACAATCATTAATAGGAACAGAGTAGTGATGTGTA]
[+] EMBL CD113818 [AGCCGTCATCAAGAACGTACACTGAACCATGCTGATCATCAATTAATTACTAATATTGGGAATCAATTATAGTTGTCAAGTATTGAATAACACACAGCACAAACATAAAGGAGGAGGGGTACCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAAGACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACCTATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGT ATTAGTAGCAGTA GTAGGTAAACAAAAATACGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTTTATTGAGATATTTTCACTGAGATTCATATAATGTATGG AATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACG ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT ACATTACATGAGCACAGAGTTGATATTCTTGT ]
[-] EMBL BE431264 [ AAAATATCCATCACATTTGAT ATCACGATAACAATCAT AAGTTA TTAAGTAGTAATTAGTAGCAGTACGTAGGTAAAC AAAATACG AAGACAAAATACATTCGATGTAACAC AATACTTGAAAATGGAATGATTAATGAGATAATTTCACTGAGATACATATAATGTATGGAAATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACGAACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAATCGACATTACATGAGCACAGAGTTGATATTCTnttttt ]
[-] EMBL CD072129 [ TAGTAGCAGTA GTAGGTAAACAAAAATACGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTTTATTGAGATATTTTCACTGAGATTCATATAATGTATGG AATGAATGAAGCAAAGCAAAGACACTTGTGATATACACTAACG ACATAGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT ACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATTTTACAGGACATGGTTATGCTCTCTCTCTGTCTGT ]
[+] EMBL CD167148 [ tacatCGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTATATTGAGATATTTTCACTGAGATTCATATAATGTATGG AATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACG ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT AC ]
[-] EMBL CD134423 [ ACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTTTATTGAGATATTTTCACTGAGATTCATATAATGTATGG AATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACG ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT ACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATTTTACAGGACATGGTTATGCTCTCTCTCTGTCTGTTTTTTCTTGGTCACGTACATAAACAAATGTCAGTGGTATAATAGAGGTCAATGTTCTAGAAATGTTTATTGGTAGAGTAGTCGTACAATATAAACGAAAGAGGTAATTTGACCACAACACACACACACAAACAAACACATACAGAATTATGGTTACCATAAATTGGATAATAACACATCGAATGGATACCCTCTCTTTCTCCATCCTCCGAATCACAATCATTAATAGGAACAGAGTAGTGATGTGTA]
[+] EMBL CD178019 [ TTGTGATATACACTAACG ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT ACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATTTTACAGGACATGGTTATGCTCTCTCTCTGTCTGTTTTTTCTTGGTCACGTACATAAACAAATGTCA TGGTATAATAGAGGTCAATGTTCTAGAAATGTTTATTGGTAGAGTAGTCGTACAATATAAACGAAAGAGGTAATTTGACCACAACACACACACACGAACAAACACATACAGAATTATGGTTACCATAAATTGGATAATAACACATCGAATG ]
consensusID : consensus_10907#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence
[CATTAGTAACATTATCATTAACACTAATCATCGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCACGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGAAATACAACGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTGGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGACACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATCATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGACATCAGGGAACAGAT]
[-] EMBL CD157318 [CATTAGTAACATTATCATTAACACTAATCATCGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCACGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGAAATACAACGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTGGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGACACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGT ]
[-] EMBL CD113861 [ atttGTGGTATTA TAGTAGCAGAT GTTCATTACTTGTAGGTTGAATCTCATTTTGAGGCTGAGATGAACTATTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATCATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGACATCAGGGAACAGAT]
consensusID : consensus_10907#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 517 fasta sequence
[TGAATAACACACAGCACAAACATAAAGGAGGAGGGGTATCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAATACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACATATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAGTAGTAAGGNTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATTATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGACTGAGTTGAAC]
[-] EMBL CD113824 [TGAATAACACACAGCACAAACATAAAGGAGGAGGGGTATCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAATACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACATATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAGTAGTAAGGNTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATTATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGACTGAGTTGAAC]
[-] EMBL CD113765 [ GGAGGGGTATCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAAAACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACATATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAGTAGTAAGGNTTTTGGGGNTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTT ]
[+] EMBL CD116778 [ TGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTC ]
consensusID : consensus_10907#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence
[GACGCCAGAATTCGGCACGAGGAATACAGAAGGTACAGCAAATTTGAAAAAACCTACTACTAAATCAAATTGTAATTGTTAATAATTTATGTTTATTTGAATGGATTTTGATGATGACTTATCATCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTCTACTGCATAAACTTGTCCTGTCAACATCTTGTTATCC]
[+] EMBL CD077529 [GACGCCAGAATTCGGCACGAGGAATACAGAAGGTACAGCAAATTTGAAAAAACCTACTACTAAATCAAATTGTAATTGTTAATAATTTATGTTTATTTGAATGGATTTTGATGATGACTTATCATCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTCTACTGCATAAACTTGTCCTGTCAACATCTTGTTATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10907#0 TTGTAATTTTTTATCCGTATTTTTATCACTGCAGGAAGCAGATGGATCAGTAGAAGATAA 60
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 ------------------------------------------------------------
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 CTGTTTATTACAATCAGATGTAACATCATCATTATGCTCAAGTTGTTCACAAGAAATAAT 120
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 ------------------------------------------------------------
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 AGGCAAATCAGTTGACTTTGAAACATCATGAGCTGTGGAACTGACTGATGTGAAACTGAA 180
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 ------------------------------------------------------------
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 TAATTCATATGTTTATTGTTCTCTTCAACAACTTCACATAATGTTCGCAAAAATGCCAAC 240
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 ------------------------------------------------------------
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 ATTGCAATTATACGACCCCAGTTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGA 300
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 ------------------------------------------------------------
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 AATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCA 360
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 ------------------------ATTCTGCTTATTTACATATGGGTGATTCTCTGTTTC 36
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 GCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCA 420
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 ACAATTCGTCTGCGGCTCCAGATGATGAATATGATTATTTGATTAAACTTTTAGCCCTTG 96
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 CGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTA 480
consensus_10907#3 ----CATTAGTAACATTATCATTAACACTAATCATCGTCGTTTTGTTTGTATCTTCTGTA 56
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 GAGATAGCAATGTTGGGAAAACAAGCTTATTATATCAGTATACTGATAATATTTTCAATC 156
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 CAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGC 540
consensus_10907#3 CAACTTTGATCAT------------------------------------TATTTAAACGC 80
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ------------------------------------------------------------
consensus_10907#1 CACGATTTACAACAACTGTTGGTGTAGATTTT----CGTCAAAAACGTTTAGTTCGGGAA 212
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 GCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCA-GC 599
consensus_10907#3 GCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCACGC 140
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 -------------------------------------AGCCGTCATCAAGAACGTACACT 23
consensus_10907#1 AGTCGTGATTCTGAAGGTCTTTTAGGACCTAAACAACGCTTGCATTTACAGTTATGGGAT 272
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 GAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATG 659
consensus_10907#3 GAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATG 200
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 GAACCATGCTGATCATC-AATTAATTACTAATATTGGGAATCAATTATAGTTG--TCAAG 80
consensus_10907#1 ACGGCTGGACAAGAACGTTATCGAAGTTTATGCACTGTGTTTTTACGTGATGCAATGGGA 332
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 AGATTGATGATATACAA-GAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATG 718
consensus_10907#3 AGATTGATGAAATACAACGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATG 260
consensus_10907#4 ---TGAATAACACACAGCACAAAC---ATAAAGGAGGAGGGGTATC-GAAGAACCAGGAG 53
consensus_10907#2 TATTGAATAACACACAGCACAAAC---ATAAAGGAGGAGGGGTACC-GAAGAACCAGGAG 136
consensus_10907#1 TTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTTTAAAAATTGTCATGCTTGGATG 392
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 GTTCATTACTTGTAGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGAAAC 778
consensus_10907#3 GTTCATTACTTGTGGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGACAC 320
consensus_10907#4 G---AAAGCAAAAAGGAAAAATACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCA- 109
consensus_10907#2 G---AAAGCAAAAAGGAAAAAGACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCA- 192
consensus_10907#1 A---ATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAAT 449
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 GTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGA-GTAAAATCTGT--ATTAT 835
consensus_10907#3 GTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGA-GTAAAATCTGT--ATTAT 377
consensus_10907#4 ATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATAC-ATCACATATGATAATCAC 168
consensus_10907#2 ATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATAC-ATCACCTATGATAATCAC 251
consensus_10907#1 AAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTTGT 509
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 TTGTACAACTAATTGTTGGTGTAAG-AGTAGTAGTAGCAG--TAGTAAGGGTTTTGGGGG 892
consensus_10907#3 TTGTACAACTAATTGTTGGTGTAAG-AGTAGTAGTAGCAG--TAGTAAGGGTTTTGGGGG 434
consensus_10907#4 GATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAG--TAGTAAGGNTTTTGGGGG 226
consensus_10907#2 GATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAG--TAGTAGGTAAACAAAAAT 309
consensus_10907#1 GATCTCAATGTACCTTATATTGAAACAAGTGCAGCAACTGGTTATCAAGTTAATGATGCT 569
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 TTGTAGAAGAATATG-ACTGGG--------AAATACTTGAAGATAAATCCGACTTAATAG 943
consensus_10907#3 TTGTAGAAGAATATG-ACTGGG--------AAATACTTGAAGATAAATCCGACTTAATAG 485
consensus_10907#4 TTGTAGAAGAATATG-ACTGGG--------AAATACTTGAAGATAAATCCGACTTAATAG 277
consensus_10907#2 ACGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAAT--GTTTATTGA 367
consensus_10907#1 GTGGATCGTTTATTAGATTTAGT--AATGACAAGAATTGAAGCCTCAGT-AACTAAAGCA 626
consensus_10907#5 --------------------------------------------------GACGCCAGAA 10
consensus_10907#0 TATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTA 1003
consensus_10907#3 TATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTA 545
consensus_10907#4 TATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTA 337
consensus_10907#2 GATATTTTCACTGAGATTCATATAATGTATGGAAT------GAATGAAGCAAAGCAAAGA 421
consensus_10907#1 CGTATCCATGGTAATA--CAGAAGGTACA-GCAAATTTGAAAAAACCTACTACTAAATCA 683
consensus_10907#5 TTCGGCACGAGGAATA--CAGAAGGTACA-GCAAATTTGAAAAAACCTACTACTAAATCA 67
* * * * * * * * * * ** *
consensus_10907#0 AATGTGAAAGGAAATTTATTGTTCTCAAGGTAAT-TGGATTTTGAA---ATAGTACATTA 1059
consensus_10907#3 AATGTGAAAGGAAATTTATTGTTCTCAAGGTAAT-TGGATTTTGAA---ATAGTACATCA 601
consensus_10907#4 AATGTGAAAGGAAATTTATTGTTCTCAAGGTAAT-TGGATTTTGAA---ATAGTACATTA 393
consensus_10907#2 TACTTGTGATATACACTAACGACATTGAGTAAACATACATATCACATATACAACAGGGAA 481
consensus_10907#1 AATTGTAATTGTTAATAATTTATGTTTATTTGAA-TGGATTTTGATG--ATGACTTATCA 740
consensus_10907#5 AATTGTAATTGTTAATAATTTATGTTTATTTGAA-TGGATTTTGATG--ATGACTTATCA 124
* * * * * * ** * * *
consensus_10907#0 TAATTGTA--GATACTATCATGAT-TATTATTATCGTCGTTAAATTGTCGTAAAGAGGAA 1116
consensus_10907#3 TAATTGTA--GATACTATCATGAT-TATTATTATCGTCGTTAAATTGTCGTAAAGAGGAA 658
consensus_10907#4 TAATTGTA--GATACTATCATGAT-TATTATTATCGTCGTTAAATTGTCGTAAAGAGGAA 450
consensus_10907#2 AAGTCCTGC-GACAAAAATACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATT 540
consensus_10907#1 TCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTC-TACTGCATAA 799
consensus_10907#5 TCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTC-TACTGCATAA 183
* * * * * * * * * * * ** *
consensus_10907#0 --GAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATG---ATCAGTTG 1171
consensus_10907#3 --GAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATG---ATCAGTTG 713
consensus_10907#4 --GAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATG---ATCAGTTG 505
consensus_10907#2 TTACAGGACATGGTTATGCTCTCTCTCTGTCTGTTTTTTCTTGGTCACGTACATAAACAA 600
consensus_10907#1 ACTTGTCCTGTCAACATCTTGTTATCCTGT-TGTGTTGTATTCTCTATGTATATGTGTGT 858
consensus_10907#5 ACTTGTCCTGTCAACATCTTGTTATCC--------------------------------- 210
* *
consensus_10907#0 ATTGATTGAAATATTTGAA-TGATTGGTTAGGTGAATGTCAGTAGCTGATTATTGNAGCA 1230
consensus_10907#3 ACATCAGGGAACAGAT-------------------------------------------- 729
consensus_10907#4 ACTGAGTTGAAC------------------------------------------------ 517
consensus_10907#2 ATGTCATGGTATAATAGAGGTCAATGTTCTAGAAATGTTTATTGGTAGAGTAGTCGTACA 660
consensus_10907#1 ACGCTGTGCTATCTCCCCATGTTTGTGAAGATGAACTAACTGATCAACTATAGCCTAATT 918
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 TCATATATCATTATAGATTATCAGAGACATATCATGGGCGCAGATACTAGTAGAAGTGGT 1290
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 ATATAAACGAAAGAGGTAATTTGACCACAACACACACACACAAACAAACACATACAGAAT 720
consensus_10907#1 GTGCCAACAACATACTTTTAATTGCTTTACTCTGTTCCTATTAATGATTGTGATTCGGAG 978
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 CGATGGTGACAGGAAATCNACA-CACCATGTCAGATAGCCATTATTGAGCTAGGGATTGA 1349
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 TATGGTTACCATAAATTGGATAATAACACATCGAATGGATACCCTCTCTTTCTCCATCCT 780
consensus_10907#1 GATGGAGAAAGAGAGGGTATCCATTCGATGTGTTATTATCCAATTTATGGTAACCATAAT 1038
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 TTGGAACAATTTGATCGTGGTAGGGACTTTCAGCGTAATTGCTGACCGCAAAAAGATGGC 1409
consensus_10907#3 ------------------------------------------------------------
consensus_10907#4 ------------------------------------------------------------
consensus_10907#2 CCGAATCACAATCATTAATAGGAACAGAGTAGTGATGTGTA------------------- 821
consensus_10907#1 TCTGTATGTGTTTGTTTGTGTGTGTGN--------------------------------- 1065
consensus_10907#5 ------------------------------------------------------------
consensus_10907#0 GAGAAGAATT 1419
consensus_10907#3 ----------
consensus_10907#4 ----------
consensus_10907#2 ----------
consensus_10907#1 ----------
consensus_10907#5 ----------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||