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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 942 fasta sequence
[CTCGAGGGCCANAATTCGGCACGAGGGCTAGTCAAGTGAACTATTTAAAGGGTCTCAAATGGAGAGTACTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTT-AAAATAGTGGGTTGTCGTTTACTTTCGTCC-TGTCTATTTCTGTCATGTCCTCTNTT-ATTTACTTCATCAACTNTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGAAACCACTATNTATGCTTTATCTATTTGCACANAATTACCCCATGCATTTGTCTCTGGTTAGCAGCANTAATCCCTAAANNTCACAACTATATGATNNACTGNGNATNCTAAGNGTTTTNCCTTGGTGTTTCTCTAGACCAGTTAGAACTATTACTATATGGCAATNCTTAAATCTGGGATATAACTAAANCAAATGGGT]
[+] EMBL CD080375 [CTCGAGGGCCANAATTCGGCACGAGGGCTAGTCAAGTGAACTATTTAAAGGGTCTCAAATGGAGAGTGCTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACGGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTT AAAATAGTGGGTTGTCGTTTACTTTCGTCC TGTCTATTTCTGTCATGTCCTCTNTT ATTTACTTCATCAACTNTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGAAACCACTATNTATGCTTTATCTATTTGCACANAATTACCCCATGCATTTGTCTCTGGTTAGCAGCANTAATCCCTAAANNTCACAACTATATGATNNACTGNGNATNCTAAGNGTTTTNCCTTGGTGTTTCTCTAGACCAGTTAGAACTATTACTATATGGCAATNCTTAAATCTGGGATATAACTAAANCAAATGGGT]
[+] EMBL CD170210 [ AACTATTTAAAGGGTCTCAAATGGAGAGTACTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCC ]
[+] EMBL AI977185 [ TATTTAAAGGGTCTCAAATGGAGAGTACTTCTCCGACTGTTAAT AATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTT ]
[+] EMBL CD135813 [ CCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAGGATTTTGCAGCAGCA ]
[+] EMBL AA566172 [ atatCATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCTTGACAGTGTACCTtcga ]
consensusID : consensus_10913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 922 fasta sequence
[TCCAGGCCAANAATTCGGCACGAGGTGGAGAGTGCTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT-AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG-TTAAAAAAGAACAGTCCTTTAT-TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGCTTTATCTATTTGCACAAAAATTACCCAATGCATTTGTCTCTGGTTAGCAGCATAAATCCCTAAAATCAACAAACTATAATGATAACTGTGTATTCTAAGTGTTTTTCCTTGTTGTTTTC-T-TAGACCAGTTTAGA-TC-TATTACTATTATGTCAATTTCTTATTCTTGTGATTATATACATATATCATATTGTTTT]
[+] EMBL CD079639 [TCCAGGCCAANAATTCGGCACGAGGTGGAGAGTGCTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACGGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGCTNTATCTATTTGCACANAAATTACCCAATGCATTTGTCTCTGGTTAGCAGCATANATCCCTAAAATCAAC NACTANTATGATNACTGNGTATTCTAAGNG TNTNCCTTG TG NTTC T TAGA CAG TTAGA TC TA TACTA TATGNC ATTTC TA TCTGGATATAACAAACATAT ]
[-] EMBL CD154694 [ ATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCT ]
[-] EMBL CD116012 [ ATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACGGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCT ]
[-] EMBL CD135608 [ TTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACGGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGCTGTTATTGGACGGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCT ]
[-] EMBL CD169502 [ AAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTT ]
[+] EMBL CD140679 [ CATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGAACCACCTAATCTATCTCTGCTTATTCTTAA ]
[-] EMBL CD073901 [ ATCGACGGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGCTTTATCTATTTGCACAAAAATTACCCAATGCATTTGTCTCTGGTTAGCAGCATAAATCCCTAAAATCAACAAACTATAATGATAACTGTGTATTCTAAGTGTTTTTCCTTGTTGTTTTC TCTAGACCAGTTTAGA TCTTATTACTATTATGTCAATTTCTTATTCTTGTGATTATATACATATATCATATTGTTTT]
[-] EMBL CD118789 [ CAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGT ]
[+] EMBL CD169001 [ TGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGGTAATAGTGGGTTGTCGT ]
[+] EMBL CD068609 [ GCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCAGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTC ]
[-] EMBL CD068617 [ GCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTCG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAAC AAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTT CTTTCGT ]
[-] EMBL CD169211 [ GCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTT ]
[-] EMBL CD169233 [ GCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTT ]
[-] EMBL CD068589 [ GCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTGCTTAAAAAAGAACAGTCCTTTATCTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATT GACAGGTGGTTGTTTGATAATAGTGG TGTCGT ]
[-] EMBL CD074291 [ TTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTTTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTTTTAATTGTAAACCACTATTTATGCTTTATCTATTTGCACAAAAATTACCCAATGCATTTGTCTTTGGTTAGCAGCATAAATCCCTAAAATCAACAAACTATAATGATAACTGTGTATTTTAAGTGTTTTTCCTTGTTGTTTTCTT TAGACCAGTTTAGATTT TATTACTATTATGTCAATTTCTTATTCTTGTGATTATATACATATATCATATTGTTTT]
[+] EMBL CD188185 [ AAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGCTTTATCTATTTGCACAAAAGTTACCCAATGCATTTGTCTCTGGTTAGCAGCATAAATCCCTAAAATCAACAAACTATAATGATAACTGTGTATTCTAAGTGTTTTTCCTTGTTGTT ]
consensusID : consensus_10913#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[TGAACTAATTTATTCAGTAAGATATGAATGTGATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGTTTAGTCCTAGAACACATCGTTTCCAATACTGTCCACCTTATTCTATGAATGCATTATGTAACAGAAACATCAGAAGTCGCTTTAGTCAGTTATTATACAGCTCATACGTAAGGAATCTGAACTTCTTCCTTGGGTATTAGGATGATTCATTGAAAATATATAAGTTAGGCCGATCGAGATTTACGTTCATTATGGTCACTCATTGTCTATTCGTGCACGAAATTTTGCTTGTAATAAGGGAGAGATTGTAGCTTTGTTTCGGTCAGATGTTGGATCTGTATGCAGTTATGATTGGTCGTTACTAAATAGGGAATTATGAGGTAGCTGTATTAAGTCACTCACGTAAATCGATACTTCTTACAGGGGGTAGTCGAAATTTGCATGGTACAGACGTATACGTTATTTGTCTTCTTTTAACAAACACATTTCCTATCCTACAAATAACAGA]
[+] EMBL CD169668 [TGAACTAATTTATTCAGTAAGATATGAATGTGATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGTTTAGTCCTAGAACACATCGTTTCCAATACTGTCCACCTTATTCTATGAATGCATTATGTAACAGAAACATCAGAAGTCGCTTTAGTCAGTTATTATACAGCTCATACGTAAGGAATCTGAACTTCTTCCTTGGGTATTAGGATGATTCATTGAAAATATATAAGTTAGGCCGATCGAGATTTACGTTCATTATGGTCACTCATTGTCTATTCGTGCACGAAATTTTGCTTGTAATAAGGGAGAGATTGTAGCTTTGTTTCGGTCAGATGTTGGATCTGTATGCAGTTATGATTGGTCGTTACTAAATAGGGAATTATGAGGTAGCTGTATTAAGTCACTCACGTAAATCGATACTTCTTACAGGGGGTAGTCGAAATTTGCATGGTACAGACGTATACGTTATTTGTCTTCTTTTAACAAACACATTTCCTATCCTACAAATAACAGA]
consensusID : consensus_10913#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence
[AAGCAACTCATTCCTTCTGTTATTTTTTAACAGTTTAATATGTAAGTATCTGTTTAGGATGATGGAATCTCCCCAAAATTAGTATGTGGGGACCATTCATATATTATAGATGTCATATTTGGATTATTTCATCTCAATAATTTATACAGTGGATAATTACCAGGACTTAGACCCAACATTTTATTGCCTCCCTTTAGTGTCTGGTCTTTGTAAGGCACCATTTTTGCTAACTGGTAATGAGTTAGTCCGAACTGTGAATTAACTGGAGCANTAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAA]
[+] EMBL CD142532 [AAGCAACTCATTCCTTCTGTTATTTTTTAACAGTTTAATATGTAAGTATCTGTTTAGGATGATGGAATCTCCCCAAAATTAGTATGTGGGGACCATTCATATATTATAGATGTCATATTTGGATTATTTCATCTCAATAATTTATACAGTGGATAATTACCAGGACTTAGACCCAACATTTTATTGCCTCCCTTTAGTGTCTGGTCTTTGTAAGGCACCATTTTTGCTAACTGGTAATGAGTTAGTCCGAACTGTGAATTAACTGGAGCANTAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAA]
consensusID : consensus_10913#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[TCCCGAATCTCGAAATGTGCATGTGATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGC]
[+] EMBL CD061193 [TCCCGAATCTCGAAATGTGCATGTGATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGC]
consensusID : consensus_10913#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 83 fasta sequence
[AAAACAATATGATTTATGTATCTTAATCACAAGAATAAGAAATTGACATATTATGTAATAAGATCTAAACTGGTCTAGAGAAA]
[+] EMBL CD078508 [AAAACAATATGATTTATGTATCTTAATCACAAGAATAAGAAATTGACATATTATGTAATAAGATCTAAACTGGTCTAGAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10913#0 CTCGAGGGCCANAATTCGGCACGAGGGCTAGTCAAGTGAACTATTTAAAGGGTCTCAAAT 60
consensus_10913#1 ------------------------------TCCAGGCCAANAATTC----GGCACGAGGT 26
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 ------------------------------------------------------------
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 GGAGAGTACTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGA 120
consensus_10913#1 GGAGAGTGCTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGA 86
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 ------------------------------------------------------------
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 AAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATT 180
consensus_10913#1 AAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATT 146
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 ------------------------------------------------------------
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 GCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAG 240
consensus_10913#1 GCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAG 206
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 ------------------------------------------------------------
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 AGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCT 300
consensus_10913#1 AGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCT 266
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 ------------------------------------------------------------
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 TCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAA 360
consensus_10913#1 TCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAA 326
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 ------------------------------------------------------------
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 ATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCC 420
consensus_10913#1 ATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCC 386
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 ----------------------------TGAACTAATTTATTCAGTAAGATATGAATGTG 32
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 ATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATA-ATTAC 479
consensus_10913#1 ATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATA-ATTAC 445
consensus_10913#4 ----------------TCCCGAATCTCGAAATGTGCATGTGA-TGGCGAGTAAA-AACAC 42
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 ATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGTTTAGTCC 92
consensus_10913#3 ------------------------------------AAGCAACTCATTCCTTCTGTTATT 24
consensus_10913#0 TATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTGTTAAAAAAGAACAG 539
consensus_10913#1 TATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTGTTAAAAAAGAACAG 505
consensus_10913#4 T-TGGAATGATAGTTAATTAAAAGTTTTCTC------AACTGCTTGTTAAAAAAGAACAG 95
consensus_10913#5 --------------------------------------------------AAAACAATA- 9
consensus_10913#2 TAGAACACATCGTTTCCAATACTGTCCACCTTATTCTATGAATGCATTATGTAACAGAAA 152
consensus_10913#3 TTTTAACAGTTTAATATGTAAGTATCTGTTTAGGATGATGGAATCTCCCCAAAATTAGTA 84
**
consensus_10913#0 TCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAA-AAGACTGTT 598
consensus_10913#1 TCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAA-AAGACTGTT 564
consensus_10913#4 TCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAA-AAGACTGTT 154
consensus_10913#5 TGATTTATGT-ATCTTAAT-CACAAGAATAAGAAAT-TGACATATTATGT-AATAAGATC 65
consensus_10913#2 CATCAGAAGTCGCTTTAGTCAGTTATTATACAGCTCAT-ACGTAAGGAAT-CTGAACTTC 210
consensus_10913#3 TGTGGGGACCATTCATATATTATAGATGTCATATTTGGATTATTTCATCTCAATAATTTA 144
* * * * *
consensus_10913#0 GTTATTGGACAGGTGGTTGTTTAA-AATAGTGGGTTGTCGTTTACTTTCGTCC-TGTCTA 656
consensus_10913#1 GTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTA 624
consensus_10913#4 GTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTA 214
consensus_10913#5 TAAACTGGTCTAGAGAAA------------------------------------------ 83
consensus_10913#2 TTCCTTGGGTATTAGGATGATTCA--TTGAAAATATATAAGTTAGGCCGATCGAGATTTA 268
consensus_10913#3 TACAGTGGATAATTACCAGGACTT-AGACCCAACATTTTATTGCCTCCCTTTAGTGTCTG 203
***
consensus_10913#0 TTTCTGTCATGTCCTCTNTT-ATTTACTTCATCAACTNTATGAATCTGTAAAGACCCACC 715
consensus_10913#1 TTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACC 684
consensus_10913#4 TTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACC 274
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 CGTTCATTATGGTCACTCATTGTCTATTCGTGCACGAAATTTTGCTTGTAATAAGGGAGA 328
consensus_10913#3 GTCTTTGTAAGGCACCATTTTTGCTAACTGGTAA--TGAGTTAGTCCG-AACTGTGAATT 260
consensus_10913#0 TACTCTATCTCTGCTTATTCTTAATTG-AAACCACTAT----NTATGCTTTATCTATTTG 770
consensus_10913#1 TACTCTATCTCTGCTTATTCTTAATTGTAAACCACTAT----TTATGCTTTATCTATTTG 740
consensus_10913#4 TACTCTATCTCTGCTTATTCTTAATTGTAAACCACTAT----TTATGC------------ 318
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 GATTGTAGCTTTGTTTCGGTCAGATGTTGGATCTGTATGCAGTTATGATTGGTCGTTACT 388
consensus_10913#3 AACTGGAGCANTAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGC 320
consensus_10913#0 CACANAA-TTACCCCATGCATTTGTCTCTGGTTAGCAGCANTAATCCCTAAANNTCACAA 829
consensus_10913#1 CACAAAAATTACCCAATGCATTTGTCTCTGGTTAGCAGCATAAATCCCTAAAATCAACAA 800
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 AAATAGGGAATTATGAGGTAGCTGTATTAAGTCACTCACGTAAATCGATACTTCTTACAG 448
consensus_10913#3 AGCAGCAAA--------------------------------------------------- 329
consensus_10913#0 -CTATATGATNNACTGNGNATNCTAAGNGTTTTNCCTTGGTGTTTCTCTAGACCAGTT-A 887
consensus_10913#1 ACTATAATGATAACTGTGTATTCTAAGTGTTTTTCCTTGTTGTTTTCTTAGACCAGTTTA 860
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 GGGGTAGTCGAAATTTGCATGGTACAGACGTATACGTTATTTGTCTTCTTTTAACAAACA 508
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 GAACTATTACTAT-ATGGCAATNCTTAAATCTGGG----ATATAACTAAANCAAATGGGT 942
consensus_10913#1 GATCTATTACTATTATGTCAATTTCTTATTCTTGTGATTATATACATATATCATATTGTT 920
consensus_10913#4 ------------------------------------------------------------
consensus_10913#5 ------------------------------------------------------------
consensus_10913#2 CATTTCCTATCCTACAAATAACAGA----------------------------------- 533
consensus_10913#3 ------------------------------------------------------------
consensus_10913#0 --
consensus_10913#1 TT 922
consensus_10913#4 --
consensus_10913#5 --
consensus_10913#2 --
consensus_10913#3 --
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||