These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 942 fasta sequence [CTCGAGGGCCANAATTCGGCACGAGGGCTAGTCAAGTGAACTATTTAAAGGGTCTCAAATGGAGAGTACTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTT-AAAATAGTGGGTTGTCGTTTACTTTCGTCC-TGTCTATTTCTGTCATGTCCTCTNTT-ATTTACTTCATCAACTNTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGAAACCACTATNTATGCTTTATCTATTTGCACANAATTACCCCATGCATTTGTCTCTGGTTAGCAGCANTAATCCCTAAANNTCACAACTATATGATNNACTGNGNATNCTAAGNGTTTTNCCTTGGTGTTTCTCTAGACCAGTTAGAACTATTACTATATGGCAATNCTTAAATCTGGGATATAACTAAANCAAATGGGT] [+] EMBL CD080375 [CTCGAGGGCCANAATTCGGCACGAGGGCTAGTCAAGTGAACTATTTAAAGGGTCTCAAATGGAGAGTGCTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACGGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTT AAAATAGTGGGTTGTCGTTTACTTTCGTCC TGTCTATTTCTGTCATGTCCTCTNTT ATTTACTTCATCAACTNTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGAAACCACTATNTATGCTTTATCTATTTGCACANAATTACCCCATGCATTTGTCTCTGGTTAGCAGCANTAATCCCTAAANNTCACAACTATATGATNNACTGNGNATNCTAAGNGTTTTNCCTTGGTGTTTCTCTAGACCAGTTAGAACTATTACTATATGGCAATNCTTAAATCTGGGATATAACTAAANCAAATGGGT] [+] EMBL CD170210 [ AACTATTTAAAGGGTCTCAAATGGAGAGTACTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCC ] [+] EMBL AI977185 [ TATTTAAAGGGTCTCAAATGGAGAGTACTTCTCCGACTGTTAAT AATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTT ] [+] EMBL CD135813 [ CCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAGGATTTTGCAGCAGCA ] [+] EMBL AA566172 [ atatCATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCTTGACAGTGTACCTtcga ] consensusID : consensus_10913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 922 fasta sequence [TCCAGGCCAANAATTCGGCACGAGGTGGAGAGTGCTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT-AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG-TTAAAAAAGAACAGTCCTTTAT-TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGCTTTATCTATTTGCACAAAAATTACCCAATGCATTTGTCTCTGGTTAGCAGCATAAATCCCTAAAATCAACAAACTATAATGATAACTGTGTATTCTAAGTGTTTTTCCTTGTTGTTTTC-T-TAGACCAGTTTAGA-TC-TATTACTATTATGTCAATTTCTTATTCTTGTGATTATATACATATATCATATTGTTTT] [+] EMBL CD079639 [TCCAGGCCAANAATTCGGCACGAGGTGGAGAGTGCTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGAAAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATTGCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACGGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGCTNTATCTATTTGCACANAAATTACCCAATGCATTTGTCTCTGGTTAGCAGCATANATCCCTAAAATCAAC NACTANTATGATNACTGNGTATTCTAAGNG TNTNCCTTG TG NTTC T TAGA CAG TTAGA TC TA TACTA TATGNC ATTTC TA TCTGGATATAACAAACATAT ] [-] EMBL CD154694 [ ATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCT ] [-] EMBL CD116012 [ ATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACGGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCT ] [-] EMBL CD135608 [ TTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACGGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGCTGTTATTGGACGGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCT ] [-] EMBL CD169502 [ AAGCTATTCTTCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTT ] [+] EMBL CD140679 [ CATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGAACCACCTAATCTATCTCTGCTTATTCTTAA ] [-] EMBL CD073901 [ ATCGACGGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGCTTTATCTATTTGCACAAAAATTACCCAATGCATTTGTCTCTGGTTAGCAGCATAAATCCCTAAAATCAACAAACTATAATGATAACTGTGTATTCTAAGTGTTTTTCCTTGTTGTTTTC TCTAGACCAGTTTAGA TCTTATTACTATTATGTCAATTTCTTATTCTTGTGATTATATACATATATCATATTGTTTT] [-] EMBL CD118789 [ CAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGT ] [+] EMBL CD169001 [ TGGCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGGTAATAGTGGGTTGTCGT ] [+] EMBL CD068609 [ GCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCAGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTC ] [-] EMBL CD068617 [ GCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTCG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAAC AAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTT CTTTCGT ] [-] EMBL CD169211 [ GCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTT ] [-] EMBL CD169233 [ GCTACTCCTGACAGTGTACCTGCAGTTCGT AAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTT ] [-] EMBL CD068589 [ GCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAAAATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTATTCTCAGATAACTGCTTGCTTAAAAAAGAACAGTCCTTTATCTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATT GACAGGTGGTTGTTTGATAATAGTGG TGTCGT ] [-] EMBL CD074291 [ TTAATCCTGTCGCTGTTTCCGCTCCATCGAAGGCTTCATTATCCCATCCAGCCGACAGTTTAAGTCTCTTATCAACATAATTACTATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTG TTAAAAAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTTTTAATTGTAAACCACTATTTATGCTTTATCTATTTGCACAAAAATTACCCAATGCATTTGTCTTTGGTTAGCAGCATAAATCCCTAAAATCAACAAACTATAATGATAACTGTGTATTTTAAGTGTTTTTCCTTGTTGTTTTCTT TAGACCAGTTTAGATTT TATTACTATTATGTCAATTTCTTATTCTTGTGATTATATACATATATCATATTGTTTT] [+] EMBL CD188185 [ AAAGAACAGTCCTTTAT TTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGCTTTATCTATTTGCACAAAAGTTACCCAATGCATTTGTCTCTGGTTAGCAGCATAAATCCCTAAAATCAACAAACTATAATGATAACTGTGTATTCTAAGTGTTTTTCCTTGTTGTT ] consensusID : consensus_10913#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [TGAACTAATTTATTCAGTAAGATATGAATGTGATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGTTTAGTCCTAGAACACATCGTTTCCAATACTGTCCACCTTATTCTATGAATGCATTATGTAACAGAAACATCAGAAGTCGCTTTAGTCAGTTATTATACAGCTCATACGTAAGGAATCTGAACTTCTTCCTTGGGTATTAGGATGATTCATTGAAAATATATAAGTTAGGCCGATCGAGATTTACGTTCATTATGGTCACTCATTGTCTATTCGTGCACGAAATTTTGCTTGTAATAAGGGAGAGATTGTAGCTTTGTTTCGGTCAGATGTTGGATCTGTATGCAGTTATGATTGGTCGTTACTAAATAGGGAATTATGAGGTAGCTGTATTAAGTCACTCACGTAAATCGATACTTCTTACAGGGGGTAGTCGAAATTTGCATGGTACAGACGTATACGTTATTTGTCTTCTTTTAACAAACACATTTCCTATCCTACAAATAACAGA] [+] EMBL CD169668 [TGAACTAATTTATTCAGTAAGATATGAATGTGATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGTTTAGTCCTAGAACACATCGTTTCCAATACTGTCCACCTTATTCTATGAATGCATTATGTAACAGAAACATCAGAAGTCGCTTTAGTCAGTTATTATACAGCTCATACGTAAGGAATCTGAACTTCTTCCTTGGGTATTAGGATGATTCATTGAAAATATATAAGTTAGGCCGATCGAGATTTACGTTCATTATGGTCACTCATTGTCTATTCGTGCACGAAATTTTGCTTGTAATAAGGGAGAGATTGTAGCTTTGTTTCGGTCAGATGTTGGATCTGTATGCAGTTATGATTGGTCGTTACTAAATAGGGAATTATGAGGTAGCTGTATTAAGTCACTCACGTAAATCGATACTTCTTACAGGGGGTAGTCGAAATTTGCATGGTACAGACGTATACGTTATTTGTCTTCTTTTAACAAACACATTTCCTATCCTACAAATAACAGA] consensusID : consensus_10913#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [AAGCAACTCATTCCTTCTGTTATTTTTTAACAGTTTAATATGTAAGTATCTGTTTAGGATGATGGAATCTCCCCAAAATTAGTATGTGGGGACCATTCATATATTATAGATGTCATATTTGGATTATTTCATCTCAATAATTTATACAGTGGATAATTACCAGGACTTAGACCCAACATTTTATTGCCTCCCTTTAGTGTCTGGTCTTTGTAAGGCACCATTTTTGCTAACTGGTAATGAGTTAGTCCGAACTGTGAATTAACTGGAGCANTAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAA] [+] EMBL CD142532 [AAGCAACTCATTCCTTCTGTTATTTTTTAACAGTTTAATATGTAAGTATCTGTTTAGGATGATGGAATCTCCCCAAAATTAGTATGTGGGGACCATTCATATATTATAGATGTCATATTTGGATTATTTCATCTCAATAATTTATACAGTGGATAATTACCAGGACTTAGACCCAACATTTTATTGCCTCCCTTTAGTGTCTGGTCTTTGTAAGGCACCATTTTTGCTAACTGGTAATGAGTTAGTCCGAACTGTGAATTAACTGGAGCANTAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGCAGCAGCAAA] consensusID : consensus_10913#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [TCCCGAATCTCGAAATGTGCATGTGATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGC] [+] EMBL CD061193 [TCCCGAATCTCGAAATGTGCATGTGATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGCTTGTTAAAAAAGAACAGTCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAAAAGACTGTTGTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTATTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACCTACTCTATCTCTGCTTATTCTTAATTGTAAACCACTATTTATGC] consensusID : consensus_10913#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 83 fasta sequence [AAAACAATATGATTTATGTATCTTAATCACAAGAATAAGAAATTGACATATTATGTAATAAGATCTAAACTGGTCTAGAGAAA] [+] EMBL CD078508 [AAAACAATATGATTTATGTATCTTAATCACAAGAATAAGAAATTGACATATTATGTAATAAGATCTAAACTGGTCTAGAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10913#0 CTCGAGGGCCANAATTCGGCACGAGGGCTAGTCAAGTGAACTATTTAAAGGGTCTCAAAT 60 consensus_10913#1 ------------------------------TCCAGGCCAANAATTC----GGCACGAGGT 26 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 GGAGAGTACTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGA 120 consensus_10913#1 GGAGAGTGCTTCTCCGACTGTTAATGTAAATATGACTTCATCCGTTGAGGAAGAGCTTGA 86 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 AAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATT 180 consensus_10913#1 AAGTAAAATCAAATCAAAATATCCAGGTCTCAACAAACAAGGTGTTGGCTCCCTGCTATT 146 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 GCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAG 240 consensus_10913#1 GCAAAAGCGATTGAATCGTGGACATAAATACTTCGATTCTGGAGACTACAATATGGCAAG 206 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 AGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCT 300 consensus_10913#1 AGCAAAGATTTTGCAGCAGCAAAAGCATGTACTCCCTCCCCAAACAGAAGAAGCTATTCT 266 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 TCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAA 360 consensus_10913#1 TCATGAATCGACAGGGGAAACTATGGCTACTCCTGACAGTGTACCTGCAGTTCGTAAAAA 326 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 ------------------------------------------------------------ consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 ATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCC 420 consensus_10913#1 ATCCATTTTATCTCCAAATGGTGTAGAGTCTGTGGTTAATCCTGTCGCTGTTTCCGCTCC 386 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 ----------------------------TGAACTAATTTATTCAGTAAGATATGAATGTG 32 consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 ATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTAAGTCTCTTATCAACATA-ATTAC 479 consensus_10913#1 ATCGAAGGCTTCATTATCCCATCCAGCCGACAGTCTGAGTCTCTTATCAACATA-ATTAC 445 consensus_10913#4 ----------------TCCCGAATCTCGAAATGTGCATGTGA-TGGCGAGTAAA-AACAC 42 consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 ATGGCGAGTAAAAACACTTGGAATGATAGTTAATTAAAAGTTTTCTCAACTGTTTAGTCC 92 consensus_10913#3 ------------------------------------AAGCAACTCATTCCTTCTGTTATT 24 consensus_10913#0 TATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTGTTAAAAAAGAACAG 539 consensus_10913#1 TATTCAGTGAAAAATAAACAATGTTCTACTCTCAGATAACTGCTTGTTAAAAAAGAACAG 505 consensus_10913#4 T-TGGAATGATAGTTAATTAAAAGTTTTCTC------AACTGCTTGTTAAAAAAGAACAG 95 consensus_10913#5 --------------------------------------------------AAAACAATA- 9 consensus_10913#2 TAGAACACATCGTTTCCAATACTGTCCACCTTATTCTATGAATGCATTATGTAACAGAAA 152 consensus_10913#3 TTTTAACAGTTTAATATGTAAGTATCTGTTTAGGATGATGGAATCTCCCCAAAATTAGTA 84 ** consensus_10913#0 TCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAA-AAGACTGTT 598 consensus_10913#1 TCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAA-AAGACTGTT 564 consensus_10913#4 TCCTTTATTTCATGACAGTACACAAGGGTAGCATATATGTCATAAAACAA-AAGACTGTT 154 consensus_10913#5 TGATTTATGT-ATCTTAAT-CACAAGAATAAGAAAT-TGACATATTATGT-AATAAGATC 65 consensus_10913#2 CATCAGAAGTCGCTTTAGTCAGTTATTATACAGCTCAT-ACGTAAGGAAT-CTGAACTTC 210 consensus_10913#3 TGTGGGGACCATTCATATATTATAGATGTCATATTTGGATTATTTCATCTCAATAATTTA 144 * * * * * consensus_10913#0 GTTATTGGACAGGTGGTTGTTTAA-AATAGTGGGTTGTCGTTTACTTTCGTCC-TGTCTA 656 consensus_10913#1 GTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTA 624 consensus_10913#4 GTTATTGGACAGGTGGTTGTTTGATAATAGTGGGTTGTCGTTTACTTTCGTCCATGTCTA 214 consensus_10913#5 TAAACTGGTCTAGAGAAA------------------------------------------ 83 consensus_10913#2 TTCCTTGGGTATTAGGATGATTCA--TTGAAAATATATAAGTTAGGCCGATCGAGATTTA 268 consensus_10913#3 TACAGTGGATAATTACCAGGACTT-AGACCCAACATTTTATTGCCTCCCTTTAGTGTCTG 203 *** consensus_10913#0 TTTCTGTCATGTCCTCTNTT-ATTTACTTCATCAACTNTATGAATCTGTAAAGACCCACC 715 consensus_10913#1 TTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACC 684 consensus_10913#4 TTTCTGTCATGTCCTCTTTTCATTTACTTCATCAACTTTATGAATCTGTAAAGACCCACC 274 consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 CGTTCATTATGGTCACTCATTGTCTATTCGTGCACGAAATTTTGCTTGTAATAAGGGAGA 328 consensus_10913#3 GTCTTTGTAAGGCACCATTTTTGCTAACTGGTAA--TGAGTTAGTCCG-AACTGTGAATT 260 consensus_10913#0 TACTCTATCTCTGCTTATTCTTAATTG-AAACCACTAT----NTATGCTTTATCTATTTG 770 consensus_10913#1 TACTCTATCTCTGCTTATTCTTAATTGTAAACCACTAT----TTATGCTTTATCTATTTG 740 consensus_10913#4 TACTCTATCTCTGCTTATTCTTAATTGTAAACCACTAT----TTATGC------------ 318 consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 GATTGTAGCTTTGTTTCGGTCAGATGTTGGATCTGTATGCAGTTATGATTGGTCGTTACT 388 consensus_10913#3 AACTGGAGCANTAATACTTCGATTCTGGAGACTACAATATGGCAAGAGCAAAGATTTTGC 320 consensus_10913#0 CACANAA-TTACCCCATGCATTTGTCTCTGGTTAGCAGCANTAATCCCTAAANNTCACAA 829 consensus_10913#1 CACAAAAATTACCCAATGCATTTGTCTCTGGTTAGCAGCATAAATCCCTAAAATCAACAA 800 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 AAATAGGGAATTATGAGGTAGCTGTATTAAGTCACTCACGTAAATCGATACTTCTTACAG 448 consensus_10913#3 AGCAGCAAA--------------------------------------------------- 329 consensus_10913#0 -CTATATGATNNACTGNGNATNCTAAGNGTTTTNCCTTGGTGTTTCTCTAGACCAGTT-A 887 consensus_10913#1 ACTATAATGATAACTGTGTATTCTAAGTGTTTTTCCTTGTTGTTTTCTTAGACCAGTTTA 860 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 GGGGTAGTCGAAATTTGCATGGTACAGACGTATACGTTATTTGTCTTCTTTTAACAAACA 508 consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 GAACTATTACTAT-ATGGCAATNCTTAAATCTGGG----ATATAACTAAANCAAATGGGT 942 consensus_10913#1 GATCTATTACTATTATGTCAATTTCTTATTCTTGTGATTATATACATATATCATATTGTT 920 consensus_10913#4 ------------------------------------------------------------ consensus_10913#5 ------------------------------------------------------------ consensus_10913#2 CATTTCCTATCCTACAAATAACAGA----------------------------------- 533 consensus_10913#3 ------------------------------------------------------------ consensus_10913#0 -- consensus_10913#1 TT 922 consensus_10913#4 -- consensus_10913#5 -- consensus_10913#2 -- consensus_10913#3 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||