These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1731 fasta sequence [CTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGGTACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAA-CAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTNTG-ATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTAACGACGAAAGAAGAA-ATAACTGCAACTGACGTCTTCGAGGAACGACCTGTCCTGCCATTGCCTACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAGGCAAGGAAGTCGAAGAACAAGATAGTCATATGACGGGAGTTTTCATAAAACCAATATCTCAACATGTTGATCATAAATCTACTTCAACTGACAGAAACCAGATAAAATATGTTGTACAGGAATTAATAGATACCATTGGACCACAATTCGTTGATACTGCTTCAGTTGAACAGCTACTGCCGACTGGTCGTGAAGAAATAATGGAAGATATAATTGAACCTAGAACATTTGATCGTAAGGCACAGACAATCTCAGTTTTGAAGGATTCTCAAGGAGTTAGAACCATATCGACTGTAACACCTCAATCCCCTCCTGTCTATAGTACAGATAAAAGTGGAATATCTGATTCTATGGATACACTGAGTACTGGGTTTATTATGCCACANATCTTTCCTACTG] [+] EMBL CD071563 [CTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGGTACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAA CAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGCTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAATCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGC ACGCTCAAAACACTTTTGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTtc ] [+] EMBL CD089125 [ CTAGAAACGCTAGACAAATTACAAAAA CAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGCCTGACGCGCTCACTAAAACAAGTCATTNTG ATGCTATTCCCTCA ] [+] EMBL CD089162 [ CTAGAAACGCTAGACAAATTACAAAAANCAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGGAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTANAAC AGTCATTCTG ATGCTATCNCCTC ] [+] EMBL CD137604 [ AATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTGCATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTANAGCAAGTCATTNTG ATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTAACGACGAAAGAAGAANAT ACTGCAACTGACGTCTTCGAGGAA ] [-] EMBL CD187780 [ GTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCAACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTTTG ATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTAACGACGAAAGAAGAA ATAACTGCAACTGACGTCTTCGAGGAACGACCTGTCCTGCCATTGCCTACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCA ] [-] EMBL CD068399 [ TTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGCGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTTTG ATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTCACGACGAAAGAAGAA ATAACTGCAACTGACGTCTTCGAGGAACG ] [+] EMBL SMCER1 [ CAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAAGGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACCCCCTCACTAAAACAAGTCATT TGAATGCTATTCCCTCAAGTGTAACTGATGTACACCCAGTAACGACGAAAGAAGAA ATAACTGCAACTGACGTCTTCGAGGAACGACCTGTCCTGCCATTGCCTACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAGGCAAGGAAGTCGAAGAACAAGATAGTCATATGACGGGAGTTTTCATAAAACCAATATCTCAACATGTTGATCATAAATCTACTTCAACTGACAGAAACCAGATAAAATATGTTGTACAGGAATTAATAGATACCATTGGACCACAATTCGTTGATACTGCTTCAGTTGAACAGCTACTGCCGACTGGTCGTGAAGAAATAATGGAAGATATAATTGAACCTAGAACATTTGATCGTAAGGCACAGACAATCTCAGTTTTGAAGGATTCTCAAGGAGTTAGAACCA ] [-] EMBL CD063306 [ ACGACCTGTCCTGCCATTGCCTACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGGAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAG ] [-] EMBL CD063297 [ ACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAG ] [-] EMBL CD188966 [ CCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAGTATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACA ] [-] EMBL CD063335 [ CACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGGAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAG ] [-] EMBL CD063375 [ AATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCACCCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAACAG ] [+] EMBL CD142522 [ TTGGACCACAATTCGTTGATACTGCTTCAGTTGAACAGCTACTGCCGACTGGTCGTGAAGAAATAATGGAAGATATAATTGAACCTAGAACATTTGATCGTAAGGCACAGACAATCTCAGTTTTGAAGGATTCTCAAGGAGTTAGAACCATATCGACTGTAACACCTCAATCCCCTCCTGTCTATAGTACAGATAAAAGTGGAATATCTGATTCTATGGATACACTGAGTACTGGGTTTATTATGCCACANATCTTTCCTACTG] consensusID : consensus_10918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 716 fasta sequence [ATCCATGAGCGTCGGTCGTTTAGGATTTTGACCAGCGGAATGCTGAGCAAATGAACCATTGGCTGACAAAATGTCAGGAACTGATGGATTCCAATGAGTTTGGACCTGATTTTTGTCGGTACCCCACTGATTAGTGGGCCACTGTTGACCACTTGCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG-TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAATTCCCAAAGCCAGTGATACGACCAGGTGGCTTTTGTTGGAAGGCTGGTGGATTTTTTTTGAGCGTGCTAGACTTTCGGAGATAATTGGACATTCCAGCCAGCTGGACGAGCTCTGCACTTATCTCTTGATTGGCTTCTACATAAAATCCACGACGCC] [+] EMBL CD110816 [ATCCATGAGCGTCGGTCGTTTAGGATTTTGACCAGCGGAATGCTGAGCAAATGAACCATTGGCTGACAAAATGTCAGGAACTGATGGATTCCAATGAGTTTGGACCTGATTTTTGTCGGTACCCCACTGATTAGTGGGCCACTGTTGACCACTTGCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCCTAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTG ACGTTGTGAGATACTG ] [+] EMBL CD187141 [ TGCTTCAGTTACTGTATTTGAATTTTGAATGATAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCACTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAGTCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTGAT ] [+] EMBL CD187279 [ TGCTTCAGTTACTGTATTTGAATTTTGGATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGA ] [+] EMBL CD187301 [ TGCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCACTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAA ] [-] EMBL CD187042 [ GCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCACTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAAT ] [-] EMBL CD186998 [ GCTTCAGTTACTGTATTTGAATTTTGAATGATAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCACTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGGCAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAAT ] [-] EMBL CD186866 [ GCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGTCCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAAT ] [+] EMBL CD138329 [ CCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATNGAATTCCAGAGNNTGAC ATTCTAATATCTT ] [+] EMBL CD138258 [ GACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGACAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGACATTCCAGAG GTGACAATTCTAATATCTTGTGTTGNGCAGC ] [+] EMBL CD149151 [ GTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAATTCCCAAAGCCAGTGATACGACCAGGTGGCTTTTGTTGGAAGGCTGGTGGATTTTTTTTGAGCGTGCTAGACTTTCGGAGATAATTGGACATTCCAGCCAGCTGGACGAGCTCTGCACTTATCTCTTGATTGGCTTCTACATAAAATCCACGACGCC] consensusID : consensus_10918#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [AATTACTTCAATTGTAGTAATATATAAAAGATTGTGTACAAAAAGATAGTACAGGAAGAAGGAATTAGTTCGAAGAAAGAAAGGTATAAAGCAATTTTAATCCCACAGTTTAAGGGAAGACAAAGAGTGTATACACCTATGCCATTGTGATCGATTCTGAGCCATGTCACTCAGAGTCTCCAACCATTGGTTACGATGCCACGACGGACCGACTTGTCTAATTACTGGGCATTTATTGATTGAGGTATTATAGTGTAACCAAAAAACTCGATCCGACGCGGAATATTCGCTACCAGCGAACCTGTTTGGAGATCGTTTCTTTTTGAGATCATTAGGTGTTTTTACACGAGACATTACTAAAGGACATTGGTGAAACAGTAAACAACGACCTTCTGCTATACACCAACCGCAATAAGGATCACGAGCCTTCAACATGACTGACATGTTAAGTACGCTGAACAGTTGAATAACTCAATGCNGANNAC] [+] EMBL CD192550 [AATTACTTCAATTGTAGTAATATATAAAAGATTGTGTACAAAAAGATAGTACAGGAAGAAGGAATTAGTTCGAAGAAAGAAAGGTATAAAGCAATTTTAATCCCACAGTTTAAGGGAAGACAAAGAGTGTATACACCTATGCCATTGTGATCGATTCTGAGCCATGTCACTCAGAGTCTCCAACCATTGGTTACGATGCCACGACGGACCGACTTGTCTAATTACTGGGCATTTATTGATTGAGGTATTATAGTGTAACCAAAAAACTCGATCCGACGCGGAATATTCGCTACCAGCGAACCTGTTTGGAGATCGTTTCTTTTTGAGATCATTAGGTGTTTTTACACGAGACATTACTAAAGGACATTGGTGAAACAGTAAACAACGACCTTCTGCTATACACCAACCGCAATAAGGATCACGAGCCTTCAACATGACTGACATGTTAAGTACGCTGAACAGTTGAATAACTCAATGCNGANNAC] consensusID : consensus_10918#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [ATGAACANNGCTGAACTTTACGCATTCGACCCATTCCATGAGAAATCGAATTACANTTCCCAGTCCCGTTTGGCGAGAACGTATTGAGTCATGAAAGTCAGATTCGGGATACCAGTTACCTGGGAAAAATCGCACTTTGTGGGCGTGAACCCACGCAACGCTCAAACAACTTNTGGATATGAACTAGCGCACCAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTTTGATGCTATTCCCTCA] [+] EMBL CD193015 [ATGAACANNGCTGAACTTTACGCATTCGACCCATTCCATGAGAAATCGAATTACANTTCCCAGTCCCGTTTGGCGAGAACGTATTGAGTCATGAAAGTCAGATTCGGGATACCAGTTACCTGGGAAAAATCGCACTTTGTGGGCGTGAACCCACGCAACGCTCAAACAACTTNTGGATATGAACTAGCGCACCAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTTTGATGCTATTCCCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10918#0 CTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTG 60 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 CCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCA 120 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 TTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAAT 180 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 CGACCGATCTGGGTACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTC 240 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 CTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTG 300 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 CTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAG 360 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 AACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCT 420 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 GGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAA-GATCTGATGAACAGC--TGAACT 477 consensus_10918#3 -------------------------------------------ATGAACANNGCTGAACT 17 consensus_10918#1 -ATCCATGAGCGTCGGTCGTTTAGGATTTTGACCAGCGGAATGCTGAGCAAA--TGAACC 57 consensus_10918#2 ----------AATTACTTCAATTGTAGTAATATATAAAAGATTGTGTACAAAAAGATAGT 50 ** ** * consensus_10918#0 TTAC-CATTCG--ACC-ATTCCATGAGAA-TCGAATTACATT---CCCAGTCC-G---TT 525 consensus_10918#3 TTACGCATTCG--ACCCATTCCATGAGAAATCGAATTACANTT--CCCAGTCCCG---TT 70 consensus_10918#1 ATTGGCTGACA--AA--ATGTCAGGAACTGATGGATTCCAATGAGTTTGGACCTGATTTT 113 consensus_10918#2 ACAGGAAGAAGGAATTAGTTCGAAGAAAGAAAGGTATAAAGCAATTTTAATCCCACAGTT 110 * * * ** * * * ** ** consensus_10918#0 TG-CGAGA-CGTATTGAGTCATGA--GTCAGATTCGG------ATAC-AGTTACT--GGA 572 consensus_10918#3 TGGCGAGAACGTATTGAGTCATGAAAGTCAGATTCGGG-----ATACCAGTTACCTGGGA 125 consensus_10918#1 TGTCGGTACCCCACTGATTAGTGG--GCCACTGTTGACCACTTGCTTCAGTTACTGTATT 171 consensus_10918#2 TA-AGGGAAGACAAAGAGT-GTATACACCTATGCC--------ATTGTGATCGATTCTGA 160 * * * * ** * * * * consensus_10918#0 AAAATCGCATTT---GTGCGTGAACC-ACGCAACGCTCAAACAACTTT-GGATATGA-CT 626 consensus_10918#3 AAAATCGCACTTTGTGGGCGTGAACCCACGCAACGCTCAAACAACTTNTGGATATGAACT 185 consensus_10918#1 TGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTT---CTCTGTGCT 228 consensus_10918#2 GCCATGTCACTCAGAGTCTCCAACCATTGGTTACGATGCCACGACGGACCGACTTGT-CT 219 ** * ** ** ** consensus_10918#0 AGCGCAC-AACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAG 685 consensus_10918#3 AGCGCACCAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAG 245 consensus_10918#1 GACATGCCTATCCCATTTCCCTGTCTC---ATTTACTGTGAGATTTACACAGCTAGGCAC 285 consensus_10918#2 AAT-TACTGG--GCATTTATTGATTGAGGTATT-ATAGTGTAACCAAAAAACTCGATCCG 275 * ** * *** * * * consensus_10918#0 AACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACG--CGCTCACTAAAACAAGT 743 consensus_10918#3 AACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACG--CGCTCACTAAAACAAGT 303 consensus_10918#1 ACTAGT--------CTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGT 337 consensus_10918#2 ACGCGG---AATATTCGCTACCAGCGAAC--CTGTTTGGAGATCGTTT-CTTTTTGAGAT 329 * * * ** * * ** * * * * * consensus_10918#0 CATTNTGATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTAACGACGAAAGAAGAA 803 consensus_10918#3 CATTTTGATGCTATTCCCTCA--------------------------------------- 324 consensus_10918#1 TGTGGTAGTCCTCCATAATTT-GTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGA 396 consensus_10918#2 CATTA-GGTGTTTTTACACGAGACATTACTAAAGGACATTGGTGAAACAGTAAACAACGA 388 * * * consensus_10918#0 ATAACTGCAA----CTGACGTCTTCGAGGAACGACCTGTCCTGCC---ATTGCCTACCAA 856 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 CTGGTCGCTA----GTAGCGGATTTGAACGTTGTGAGATACTGGCT-AGTTGGCAAGTGA 451 consensus_10918#2 CCTTCTGCTATACACCAACCGCAATAAGGATCACGAGCCTTCAACATGACTGACATGTTA 448 consensus_10918#0 AGAAATT--ATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCA 914 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 GGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATT 511 consensus_10918#2 AGTACGCTGAACAGTTGAATAACTCAATGCNGANNAC----------------------- 485 consensus_10918#0 ATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACG 974 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 CCAGAG-----TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGAT----GAATTC 562 consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 GATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACT 1034 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 CCAAAGCCAGTGATACGACCAGGTGGCTTTTGTTGGAAGGCTGGTGGATTTTTTTTGAGC 622 consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 ATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCT 1094 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 GTGCTAGACTTTCGGAGATAATTGGACATTCC--AGCCAGCTGGACGAGCTCTGCACT-T 679 consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 GTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCA 1154 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ATCTCTTGATTGGCTTCTACATAAAATCCACGACGCC----------------------- 716 consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 ACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGAC 1214 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 GACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACA 1274 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 CATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAGGC 1334 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 AAGGAAGTCGAAGAACAAGATAGTCATATGACGGGAGTTTTCATAAAACCAATATCTCAA 1394 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 CATGTTGATCATAAATCTACTTCAACTGACAGAAACCAGATAAAATATGTTGTACAGGAA 1454 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 TTAATAGATACCATTGGACCACAATTCGTTGATACTGCTTCAGTTGAACAGCTACTGCCG 1514 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 ACTGGTCGTGAAGAAATAATGGAAGATATAATTGAACCTAGAACATTTGATCGTAAGGCA 1574 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 CAGACAATCTCAGTTTTGAAGGATTCTCAAGGAGTTAGAACCATATCGACTGTAACACCT 1634 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 CAATCCCCTCCTGTCTATAGTACAGATAAAAGTGGAATATCTGATTCTATGGATACACTG 1694 consensus_10918#3 ------------------------------------------------------------ consensus_10918#1 ------------------------------------------------------------ consensus_10918#2 ------------------------------------------------------------ consensus_10918#0 AGTACTGGGTTTATTATGCCACANATCTTTCCTACTG 1731 consensus_10918#3 ------------------------------------- consensus_10918#1 ------------------------------------- consensus_10918#2 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||