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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 852 fasta sequence
[TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA-TTCCAAGATGGACGTCGATAAAGTGCGCATG-GAG-AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA-GACAGCA-AAATTACGA-TTGGCAAAAAT-GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT-GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTTTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT]
[+] EMBL CD159152 [TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAAGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGTTCCACAAGCTAATGTATTCGC ]
[-] EMBL CD189940 [ AAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGG ]
[+] EMBL CD083727 [ GTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGANTAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGACGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGAT ]
[+] EMBL CD081353 [ TTGTGGGACGTGATTTTGCTAGTTTAATCGTCCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATAGTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGCTTGGAATAGTTTGATAATTGACACATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTCCACCAATTGTAATGTCCAATGTTTGTCTTTTAA TACCTTACAGCTTTTTTTTTCCGG TCCC TTACTAGTTGTGCATCGT AAATCCGCCT GTAATA TCATTTTG TTGAC AAATG TCTATGAATG AAT AACAA TCACTGAT TATCGAC AGAA TCAATTTGT TAGC AACCGCTTTACC TCCAATAAgg ]
[+] EMBL SM655 [ aTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAGNAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATGGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATNAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGNTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCANTCAATGGGAGGACAGCA NAATTACGANTGGGNAAAAAT GACTGAAANCTCANAANCATCAGNTTCAANGGNAGGTGATGGAGATGATGATGTNCCGGAGCTTGGGGGAGGATNTGGGTGAGAAAAGTCGGNNGGGNTNGGTNGGTAAT ]
[+] EMBL CD123617 [ GGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCA ]
[+] EMBL CD083000 [ gcGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATACTTCCAAGATGGACGCTGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACANATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTG ]
[+] EMBL CD159394 [ ATTCGGCTAGTTTAATCGCGCGGCTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGC ]
[+] EMBL CD121729 [ ATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AGGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAG ]
[+] EMBL CD194807 [ GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAGGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCT ]
[+] EMBL CD194609 [ GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAATAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAGCTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA ]
[+] EMBL CD194632 [ GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTGGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA ]
[+] EMBL CD194629 [ GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA ]
[+] EMBL CD094974 [ TAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAG ]
[+] EMBL CD170532 [ ACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAACTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAA ]
[-] EMBL CD139513 [ TGGACGTCGATAAAGTGCGCATGAGA AAGTNGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA Gtcgcc ]
[+] EMBL CD077477 [ TGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTTACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCANAATTTACGA TGGCAAAAAT GAATGA ]
[-] EMBL CD067935 [ ATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGCACACACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TGTCTAAAATCCCAT ACGATTCAAAAACATCAGAT ]
[-] EMBL CD075185 [ CCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTTTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGG ]
[-] EMBL CD076583 [ CCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTCTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT]
[-] EMBL CD186905 [ AGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCGTTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTCTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTCTTATGAATGAAA ]
consensusID : consensus_10920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 442 fasta sequence
[CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTG-AATATAAAACATTAAATGATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG]
[+] EMBL AI976311 [CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTG AATATAAAACATTAAATGATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG]
[+] EMBL CD142534 [ CGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAAATAT AAACATTANATGATTTTGTTt ]
consensusID : consensus_10920#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[ATGGGANNGACACGCAAAATATACAGATTGGCCACAAAATAGATATGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNNTATGATGTACNNNCGGAGCGTTGTGGAAGNNATTTTGAGTGAGNNAAAAGTTCGCTTTGGAATAGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACGCACAAACTTGG]
[-] EMBL CD061401 [ATGGGANNGACACGCAAAATATACAGATTGGCCACAAAATAGATATGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNNTATGATGTACNNNCGGAGCGTTGTGGAAGNNATTTTGAGTGAGNNAAAAGTTCGCTTTGGAATAGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACGCACAAACTTGG]
consensusID : consensus_10920#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTACGTGGAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGAAGGTCACTCAGTACACCANTGGTATGTACAATGTTGGCTTTTAATTACTTCACAGNTTNTTTCTTCGGTTCCCTTNNTAGTTGTGCATTGTCAAATCGGCCTGGTAATATTCATTTNGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTNGTATAGCAAACTGTATTAACATTCAAATAAA]
[+] EMBL SM722 [AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTACGTGGAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGAAGGTCACTCAGTACACCANTGGTATGTACAATGTTGGCTTTTAATTACTTCACAGNTTNTTTCTTCGGTTCCCTTNNTAGTTGTGCATTGTCAAATCGGCCTGGTAATATTCATTTNGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTNGTATAGCAAACTGTATTAACATTCAAATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTG 60
consensus_10920#1 ------------------------------------------------------------
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 TTTATTAGACTGGAATTACTAACTTACAGAATATTCCAAGATGGACGTCGATAAAGTGCG 120
consensus_10920#1 ------------------------------------------------------------
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 CATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGG 180
consensus_10920#1 ------------------------------------------------------------
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 TACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACT 240
consensus_10920#1 ------------------------------------------------------------
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 ACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACAT 300
consensus_10920#1 ------------------------------------------------------------
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 GTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACA 360
consensus_10920#1 ------------------------------------------------------------
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 AGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCC 420
consensus_10920#1 ------------------------------------------------------------
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 AAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTC 480
consensus_10920#1 ------------------CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCG 42
consensus_10920#2 ------------------------------------------------------------
consensus_10920#3 ------------------------------------------------------------
consensus_10920#0 AAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTTGTGGAAGA 540
consensus_10920#1 ATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCG 102
consensus_10920#2 ------ATGGGANNGACACGCAAAATATACAGATTGGCCACAAA-ATA--------GATA 45
consensus_10920#3 --------AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTA--------CGTG 44
consensus_10920#0 TTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTA--------CGTT 592
consensus_10920#1 GTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATG 162
* * * ** * * * ** * *
consensus_10920#2 TGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNN-- 103
consensus_10920#3 GAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGA--AGGTCACTCAGTACACCAN-- 100
consensus_10920#0 GAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGA-AAGTCACTCAGTACACCAA-- 649
consensus_10920#1 ATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAG 222
** * * * * * * *
consensus_10920#2 ---T-ATGATGTACNNNCGGAGCG---TTGTGGAAGNNATTTTGAGT-----GAGNNAA- 150
consensus_10920#3 ---T-GGTATGTACAATGTTGGCT---TT-TAATTACTTCACAGNTT-----NTTTCTT- 146
consensus_10920#0 ---TTGTAATGTACAATGTTTGTC---TTTTAATTACTTCACAGCTT-----TTTTTTTT 698
consensus_10920#1 AGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAG 282
* ***** * * * *
consensus_10920#2 AAGTTCGCTTTG-GAAT-AGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGT 208
consensus_10920#3 CGGTTCCCTTNN-TAGT-TGTGC------ATTGTCAAATCGGCCTGGTAATATTCATTTN 198
consensus_10920#0 CGGTTCCCTTTACTAGT-TGTGC------ATTGTCAAATCGTCCTGGTAATATTCATTTT 751
consensus_10920#1 CAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATG 342
* ** * * * * ** ** * * *
consensus_10920#2 GTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCA---GTAC-ACCAATTGTAATGT 264
consensus_10920#3 GTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATAT-ATCGACTAGAATTC 257
consensus_10920#0 GTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATAT-ATCGACTAGAATTC 810
consensus_10920#1 ATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGA 402
* ** * * * ** ** * ***
consensus_10920#2 ACAATGTTTGTC---TTTTAATTACGCACAAACTTGG----- 298
consensus_10920#3 AATTNGTATAGCAAACTGTATTAACATTCAAATAAA------ 293
consensus_10920#0 AATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT 852
consensus_10920#1 ATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG-- 442
* * * * ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||