These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 852 fasta sequence [TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA-TTCCAAGATGGACGTCGATAAAGTGCGCATG-GAG-AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA-GACAGCA-AAATTACGA-TTGGCAAAAAT-GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT-GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTTTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT] [+] EMBL CD159152 [TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAAGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGTTCCACAAGCTAATGTATTCGC ] [-] EMBL CD189940 [ AAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGG ] [+] EMBL CD083727 [ GTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGANTAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGACGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGAT ] [+] EMBL CD081353 [ TTGTGGGACGTGATTTTGCTAGTTTAATCGTCCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATAGTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGCTTGGAATAGTTTGATAATTGACACATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTCCACCAATTGTAATGTCCAATGTTTGTCTTTTAA TACCTTACAGCTTTTTTTTTCCGG TCCC TTACTAGTTGTGCATCGT AAATCCGCCT GTAATA TCATTTTG TTGAC AAATG TCTATGAATG AAT AACAA TCACTGAT TATCGAC AGAA TCAATTTGT TAGC AACCGCTTTACC TCCAATAAgg ] [+] EMBL SM655 [ aTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAGNAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATGGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATNAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGNTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCANTCAATGGGAGGACAGCA NAATTACGANTGGGNAAAAAT GACTGAAANCTCANAANCATCAGNTTCAANGGNAGGTGATGGAGATGATGATGTNCCGGAGCTTGGGGGAGGATNTGGGTGAGAAAAGTCGGNNGGGNTNGGTNGGTAAT ] [+] EMBL CD123617 [ GGGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCA ] [+] EMBL CD083000 [ gcGACGTGATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATACTTCCAAGATGGACGCTGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACANATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTG ] [+] EMBL CD159394 [ ATTCGGCTAGTTTAATCGCGCGGCTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGC ] [+] EMBL CD121729 [ ATTCGGCTAGTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AGGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAG ] [+] EMBL CD194807 [ GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAGGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCT ] [+] EMBL CD194609 [ GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAATAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAGCTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA ] [+] EMBL CD194632 [ GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTGGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA ] [+] EMBL CD194629 [ GTTTAATCGTGCGGTTGTTTATTAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCA ] [+] EMBL CD094974 [ TAGACTGGAATTACTAACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAG ] [+] EMBL CD170532 [ ACTTACAGAATA TTCCAAGATGGACGTCGATAAAGTGCGCATG GAG AAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAACTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAA ] [-] EMBL CD139513 [ TGGACGTCGATAAAGTGCGCATGAGA AAGTNGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA Gtcgcc ] [+] EMBL CD077477 [ TGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTTACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCANAATTTACGA TGGCAAAAAT GAATGA ] [-] EMBL CD067935 [ ATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGCACACACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TGTCTAAAATCCCAT ACGATTCAAAAACATCAGAT ] [-] EMBL CD075185 [ CCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTTTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGG ] [-] EMBL CD076583 [ CCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTCTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT] [-] EMBL CD186905 [ AGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCCAAATATGCTCAATCAATGGGA GACAGCA AAATTACGA TTGGCAAAAAT GAATGAAAACTCAAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTT GTGGAAGATTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTACGTTGAGTGAACGTGTGTGACTCAGTCGTTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACTTCACAGCTTTTTTTCTTCGGTTCCCTTTACTAGTTGTGCATTGTCAAATCGTCCTGGTAATATTCATTTTGTTTGACAAAATGTCTTATGAATGAAA ] consensusID : consensus_10920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 442 fasta sequence [CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTG-AATATAAAACATTAAATGATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG] [+] EMBL AI976311 [CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTG AATATAAAACATTAAATGATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG] [+] EMBL CD142534 [ CGTCGATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAAATAT AAACATTANATGATTTTGTTt ] consensusID : consensus_10920#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [ATGGGANNGACACGCAAAATATACAGATTGGCCACAAAATAGATATGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNNTATGATGTACNNNCGGAGCGTTGTGGAAGNNATTTTGAGTGAGNNAAAAGTTCGCTTTGGAATAGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACGCACAAACTTGG] [-] EMBL CD061401 [ATGGGANNGACACGCAAAATATACAGATTGGCCACAAAATAGATATGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNNTATGATGTACNNNCGGAGCGTTGTGGAAGNNATTTTGAGTGAGNNAAAAGTTCGCTTTGGAATAGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCAGTACACCAATTGTAATGTACAATGTTTGTCTTTTAATTACGCACAAACTTGG] consensusID : consensus_10920#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTACGTGGAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGAAGGTCACTCAGTACACCANTGGTATGTACAATGTTGGCTTTTAATTACTTCACAGNTTNTTTCTTCGGTTCCCTTNNTAGTTGTGCATTGTCAAATCGGCCTGGTAATATTCATTTNGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTNGTATAGCAAACTGTATTAACATTCAAATAAA] [+] EMBL SM722 [AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTACGTGGAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGAAGGTCACTCAGTACACCANTGGTATGTACAATGTTGGCTTTTAATTACTTCACAGNTTNTTTCTTCGGTTCCCTTNNTAGTTGTGCATTGTCAAATCGGCCTGGTAATATTCATTTNGTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATATATCGACTAGAATTCAATTNGTATAGCAAACTGTATTAACATTCAAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 TCAAGGTTACCCTGGGCGTGACTTGTGGGACGTGATTCGGCTAGTTTAATCGTGCGGTTG 60 consensus_10920#1 ------------------------------------------------------------ consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 TTTATTAGACTGGAATTACTAACTTACAGAATATTCCAAGATGGACGTCGATAAAGTGCG 120 consensus_10920#1 ------------------------------------------------------------ consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 CATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCGGTGGAAAAGG 180 consensus_10920#1 ------------------------------------------------------------ consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 TACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATGATAAGAAACT 240 consensus_10920#1 ------------------------------------------------------------ consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 ACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAGAGGTTAACAT 300 consensus_10920#1 ------------------------------------------------------------ consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 GTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAGCAGCTCCACA 360 consensus_10920#1 ------------------------------------------------------------ consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 AGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATGATTTGTTTCC 420 consensus_10920#1 ------------------------------------------------------------ consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 AAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGAATGAAAACTC 480 consensus_10920#1 ------------------CGTGATTCGGCTAGTTTAATCAATATTCCAAGATGGACGTCG 42 consensus_10920#2 ------------------------------------------------------------ consensus_10920#3 ------------------------------------------------------------ consensus_10920#0 AAAAACATCAGATTCAAAGGCAGATGATGGAGATGATGATGTACCGGAGCTTGTGGAAGA 540 consensus_10920#1 ATAAAGTGCGCATGGAGAAGTTGGAGAAGTTAAAGGGGATGAGTGACCAGGTGCGCATCG 102 consensus_10920#2 ------ATGGGANNGACACGCAAAATATACAGATTGGCCACAAA-ATA--------GATA 45 consensus_10920#3 --------AGAAAAGTCGNTTGGAATAGTTGGATAATTGACAAATGTA--------CGTG 44 consensus_10920#0 TTTTGATGAGAAAAGTCGTTTGGAATAGTTTGATAATTGACAAATGTA--------CGTT 592 consensus_10920#1 GTGGAAAAGGTACAGCTCGTCGAAAGAAAAAAGTAGTTCATAAGAATGCTGCTGCTGATG 162 * * * ** * * * ** * * consensus_10920#2 TGTAAAACTTCTAAAATACTATCTAGATTCTAAANNGGCAGATTTGTATGGAGATNNN-- 103 consensus_10920#3 GAGTGAACGTGTGTGACTCAGTCATAATTTGGAATGA--AGGTCACTCAGTACACCAN-- 100 consensus_10920#0 GAGTGAACGTGTGTGACTCAGTCATTACTTTGCAATGA-AAGTCACTCAGTACACCAA-- 649 consensus_10920#1 ATAAGAAACTACAAAGTTCATTGAAGAAACTAAACCTCAATACTATCCCAACCATAGAAG 222 ** * * * * * * * consensus_10920#2 ---T-ATGATGTACNNNCGGAGCG---TTGTGGAAGNNATTTTGAGT-----GAGNNAA- 150 consensus_10920#3 ---T-GGTATGTACAATGTTGGCT---TT-TAATTACTTCACAGNTT-----NTTTCTT- 146 consensus_10920#0 ---TTGTAATGTACAATGTTTGTC---TTTTAATTACTTCACAGCTT-----TTTTTTTT 698 consensus_10920#1 AGGTTAACATGTATAAACCAGATGGAACTATGATTCACTTTAAGAATCCAAAAGTCCAAG 282 * ***** * * * * consensus_10920#2 AAGTTCGCTTTG-GAAT-AGTNNTTGATAATTGACAAANNTGTACGTTGANNGTGAACGT 208 consensus_10920#3 CGGTTCCCTTNN-TAGT-TGTGC------ATTGTCAAATCGGCCTGGTAATATTCATTTN 198 consensus_10920#0 CGGTTCCCTTTACTAGT-TGTGC------ATTGTCAAATCGTCCTGGTAATATTCATTTT 751 consensus_10920#1 CAGCTCCACAAGCTAATGTATTCGCAGTTACTGGACAAGCTGAATATAAAACATTAAATG 342 * ** * * * * ** ** * * * consensus_10920#2 GTGTGACTCAGTCATTACTTTGCAATGAAAGTCACTCA---GTAC-ACCAATTGTAATGT 264 consensus_10920#3 GTTTGACAAAATGTCTTATGAATGAAATAAACAATTCACTGATAT-ATCGACTAGAATTC 257 consensus_10920#0 GTTTGACAAAATGTTTTATGAATGAAATAAACAATTCACTGATAT-ATCGACTAGAATTC 810 consensus_10920#1 ATTTGGTTCCAAATATGCTCAATCAATGGGAGACAGCAAAATTACGATTGGCAAAAATGA 402 * ** * * * ** ** * *** consensus_10920#2 ACAATGTTTGTC---TTTTAATTACGCACAAACTTGG----- 298 consensus_10920#3 AATTNGTATAGCAAACTGTATTAACATTCAAATAAA------ 293 consensus_10920#0 AATTTGTATAGCAAACTGTATTAACATTCAAATAAATGGGAT 852 consensus_10920#1 ATGAAAACTCAAAACATCAGATTCAAAGCAGATGATGGAG-- 442 * * * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||