These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 1271 fasta sequence [TTCAATGACAAAGAATAATCTTTTTCTAGTTTGGAAACACGAGTGTAAACCAACTAAGAATGGATGGTTAGTAGCGCATTCAAATACATGTTTTTCTGTTTGAACCCAATCAATATCCTCTTCATCAAGAATAGTTTCTTTTTTAATAACTTTCATTGCATATATACGGTTAGTTGGTTTATGCTCTACTTGAAATACTTTAGCATAACTACCACGACCAATCACTTTGTGTTTTCTGAAATCATGTAAACCAACCCGTCCAGAAGTGATTGGAATATCAGGAATATCTATAATGCGCTGTTCTATGATTGGTATGGACTTATCATCAACTTTATCAATGATAGAAACGGGGACTGGTACACTACTAGGGTGGACACCACTTCTTTCAATTATTAAATTGTCTGAACCTGGTTTGAGATTGTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC-ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA-TACAGCATTCC-GATTG--AATCGTCTGGCAGC-AAACTGAT-GA-CCATGCAATA-AATAAAATTTCTTTTT--CCATCGTTTAGCA-CCT-CTTCGGTAC-ATATTANNTA-CTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCCACTTTTAATTCCATTTCCGAGGAAATAACGATAGGGTCGTGTTCTTCGTCGATCCATTTTATTGTAAATGGTTGATCTTTGGTGAAACTACACAATTCTCGGACTTGTTGGTCAATGACCTGAAGATTAGCTGACAACGGACAGCTCGTCACCATTGCAACAGAATTATGTATATACTTGATTTGAAGTGTATTTGAGTTTAGAGAGGACATTGCTACCACAGATGGGGAAGCCTCAAACAGTAGCGCAAAAT] [+] EMBL CD140987 [TTCAATGACAAAGAATAATCTTTTTCTAGTTTGGAAACACGAGTGTAAACCAACTAAGAATGGATGGTTAGTAGCGCATTCAAATACATGTTTTTCTGTTTGAACCCAATCAATATCCTCTTCATCAAGAATAGTTTCTTTTTTAATAACTTTCATTGCATATATACGGTTAGTTGGTTTATGCTCTACTTGAAATACTTTAGCATAACTACCACGACCAATCACTTTGTGTTTTCTG ] [-] EMBL AI976639 [ ATGCTCTACTTGAAATACTTTAGCATAACTACCACGACCAATCACTTTGAGTAAATTGAAATCATGTAAACCAACCCGTCCAGAAGTGATTGGAATATCAGGAATATCTATAATGCGCTGTTCTATGATTGGTATGGACTTATCATCAACTTTATCAATGATAGAAACGGGGACTGGTACACTACTAGGGTGGACACCACTTCTTTCAATTATTAAATTGTCTGAACCTGGTTTGAGATTGTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTC ] [+] EMBL CD190180 [ AATATCAGGAATATCTATAATGCGCTGTTCTATGATTGGTATGGACTTATCATCAACTTTATCAATGATAGAAACGGGGACTGGTACACTACTAGGGTGAACACCACTTCTTTCAATTATTAAATTGTCTGAACCTGGTTTGAGATTGTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCCNACCTTGAC ACGACGATGAAGTAGAAGACGAACATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGNTAGCACANTACAGCATTCCNGATTGGAAATCGTCTGGCAGCAAAACTGATGGACCCATGCANTANNATAAATTTCCTTTTTTCCCATCGTTTAGCACCCT CTTCCGTACAATATAANNTA ] [+] EMBL CD133588 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCACCTTTGTATGATTGAACAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGA AGATTTGTTG ] [+] EMBL CD189209 [ GTTTTTTATATCGGATGTTGGCGTAATGCGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTGTTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTNCGTAC ATATT ] [+] EMBL CD133550 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGC TTTTTTTTCTCTTGCTTTGGCGGTCTTGGGTCATCTTTGTATGATTGAACAGTAACATGAAGACGAGGCGGGAGTGTATT ] [+] EMBL CD188976 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATc ] [+] EMBL CD132676 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAACAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC ANACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATT ] [+] EMBL CD183210 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATT ] [+] EMBL CD133080 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGACTTGGTTCATCTTTGTATGATTGAACAGTAACAGGAATACGAGGCG ] [+] EMBL CD189426 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATT ] [+] EMBL CD183463 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCCTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGCCAGC AAACTGAT GA CCATGCCATA AATAAAATTTCTTTTT CCATCGTNTAGCA CCTCCTTC GTAC ATATT ] [+] EMBL CD188821 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAAAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCC ] [+] EMBL CD133560 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAACAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTAT ] [-] EMBL CD189014 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ] [-] EMBL CD183228 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ] [-] EMBL CD183524 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTGTTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ] [-] EMBL CD188846 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATNTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ] [-] EMBL CD189484 [ TTTTTTATATCGGATGTTGGCTTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ] [-] EMBL CD133268 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATNTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAACAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTTTGATAAATGCTTCACCACATTTATGGCGCACTC ] [-] EMBL CD189854 [ TATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTCCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ] [+] EMBL CD128079 [ GCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCGAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCCACTTTTAATTCCATTTCCGAGGAAATAACGATAGGGTCGTGTTCTTCGTCGATCCATTTTATTGTAAATGGTTGATCTTTGGTGAAACTACACAATTCTCGGACTTGTTGGTCAATGACCTGAAGATTAGCTGACAACGGACAGCTCGTCACCATTGCAACAGAATTATGTATATACTTGATTTGAAGTGTATTTGAGTTTAGAGAGGACATTGCTACCACAGATGGGGAAGCCTCAAACAGTAGCGCA ] [+] EMBL CD180938 [ TACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCCTCTTTTAATTCCATTTCCGAGGAAATAACGATAGGGTCGTGTTCTTCGTCGATCCATTTTATTGTAAATGGTTGATCTTTGGTGAAACTACACAATTCTCGGACTTGTTGGTCAATGACCTGAAGATTAGCTGACAACGGACAGCTCGTCACCATTGCAACAGAATTATGTACATACTTGATTTGAAGTGTATTTGAGTTTAGAGAGGACATTGCTACCACAGATGGGGAAGCCTCAAACAGTAGCGCAAAAT] consensusID : consensus_10948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [TATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACATACAGCATTCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATAAATGAACCGTTAGTTGCCACCTACCGTTTCACAATGGGG] [-] EMBL CD127273 [TATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACATACAGCATTCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATAAATGAACCGTTAGTTGCCACCTACCGTTTCACAATGGGG] consensusID : consensus_10948#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [CTTCACCACATTTATGGCGCACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACATACAGCATTCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCTCTTTTAATCCATTCCGAGGAAATAACGATAGGGTCACCTACTATT] [-] EMBL CD127975 [CTTCACCACATTTATGGCGCACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACATACAGCATTCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCTCTTTTAATCCATTCCGAGGAAATAACGATAGGGTCACCTACTATT] consensusID : consensus_10948#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [GTATGATTGGGGGAGGTATATATGAGGGAATGTTGAAAAAGATATAAAGGAAAAAAAATATTTAATAAATCTAAGCTAGTACAACCCGTTATGAGCTGTGTAATGTTGGTAACCGATAAAAAGCATTCCTAAAAAATACTAGTGAATTTACCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATT] [+] EMBL CD190030 [GTATGATTGGGGGAGGTATATATGAGGGAATGTTGAAAAAGATATAAAGGAAAAAAAATATTTAATAAATCTAAGCTAGTACAACCCGTTATGAGCTGTGTAATGTTGGTAACCGATAAAAAGCATTCCTAAAAAATACTAGTGAATTTACCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10948#0 TTCAATGACAAAGAATAATCTTTTTCTAGTTTGGAAACACGAGTGTAAACCAACTAAGAA 60 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 TGGATGGTTAGTAGCGCATTCAAATACATGTTTTTCTGTTTGAACCCAATCAATATCCTC 120 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 TTCATCAAGAATAGTTTCTTTTTTAATAACTTTCATTGCATATATACGGTTAGTTGGTTT 180 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 ATGCTCTACTTGAAATACTTTAGCATAACTACCACGACCAATCACTTTGTGTTTTCTGAA 240 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 ATCATGTAAACCAACCCGTCCAGAAGTGATTGGAATATCAGGAATATCTATAATGCGCTG 300 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 TTCTATGATTGGTATGGACTTATCATCAACTTTATCAATGATAGAAACGGGGACTGGTAC 360 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 ACTACTAGGGTGGACACCACTTCTTTCAATTATTAAATTGTCTGAACCTGGTTTGAGATT 420 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTC 480 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 ACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAAT 540 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 AGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTAT 600 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 GGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGT 660 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 --------------------TATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGT 40 consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 AGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCG 720 consensus_10948#2 -----------------------------------------CTTCACCACATTTATGGCG 19 consensus_10948#1 AGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCG 100 consensus_10948#3 ---------------------GTATGATTGGGGGAGGTATATATGAGGGAATGTTGAAAA 39 * * ** * consensus_10948#0 CACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAAT-TAATACATTTAAACCCTT 779 consensus_10948#2 CACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAAT-TAATACATTTAAACCCTT 78 consensus_10948#1 CACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAAT-TAATACATTTAAACCCTT 159 consensus_10948#3 AGATATAAAGGAAAAAAAATATTTAATAAATCTAAGCTAGTACAACCCGTTATGAGCTGT 99 * * * ** * * ** * * * * * ** * ** * * * consensus_10948#0 GTTGTCCCAA-ACCCCATATACGTTCCTTACAGTAAGCACATACAGCATT--CCGATTGA 836 consensus_10948#2 GTTGTCCCAA-ACCCCATATACGTTCCTTACAGTAAGCACATACAGCATT--CCGATTGA 135 consensus_10948#1 GTTGTCCCAA-ACCCCATATACGTTCCTTACAGTAAGCACATACAGCATT--CCGATTGA 216 consensus_10948#3 GTAATGTTGGTAACCGATAAAAAGCATTCCTAAAAAATACTAGTGAATTTACCCGATTGA 159 ** * * ** *** * * * ** ** ** ******** consensus_10948#0 ATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAG 896 consensus_10948#2 ATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAG 195 consensus_10948#1 ATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAG 276 consensus_10948#3 ATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAG 219 ************************************************************ consensus_10948#0 CACCTCTTCGGTACATATTANNTACTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAA 956 consensus_10948#2 CACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAA 255 consensus_10948#1 CACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAA 336 consensus_10948#3 CACCTCTTCGGTACATATT----------------------------------------- 238 ******************* consensus_10948#0 CCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACG 1016 consensus_10948#2 CCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACG 315 consensus_10948#1 CCCCATTAAATAAATGAACCGTTAGTTGCCACCTACCGTTT-CACAATGGGG-------- 387 consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 CCACTTTTAATTCCATTTCCGAGGAAATAACGATAGGGTCGTGTTCTTCGTCGATCCATT 1076 consensus_10948#2 CT-CTTTTAATCCA--TTCCGAGGAAATAACGATAGGGTCACCTACTATT---------- 362 consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 TTATTGTAAATGGTTGATCTTTGGTGAAACTACACAATTCTCGGACTTGTTGGTCAATGA 1136 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 CCTGAAGATTAGCTGACAACGGACAGCTCGTCACCATTGCAACAGAATTATGTATATACT 1196 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 TGATTTGAAGTGTATTTGAGTTTAGAGAGGACATTGCTACCACAGATGGGGAAGCCTCAA 1256 consensus_10948#2 ------------------------------------------------------------ consensus_10948#1 ------------------------------------------------------------ consensus_10948#3 ------------------------------------------------------------ consensus_10948#0 ACAGTAGCGCAAAAT 1271 consensus_10948#2 --------------- consensus_10948#1 --------------- consensus_10948#3 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||