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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 1271 fasta sequence
[TTCAATGACAAAGAATAATCTTTTTCTAGTTTGGAAACACGAGTGTAAACCAACTAAGAATGGATGGTTAGTAGCGCATTCAAATACATGTTTTTCTGTTTGAACCCAATCAATATCCTCTTCATCAAGAATAGTTTCTTTTTTAATAACTTTCATTGCATATATACGGTTAGTTGGTTTATGCTCTACTTGAAATACTTTAGCATAACTACCACGACCAATCACTTTGTGTTTTCTGAAATCATGTAAACCAACCCGTCCAGAAGTGATTGGAATATCAGGAATATCTATAATGCGCTGTTCTATGATTGGTATGGACTTATCATCAACTTTATCAATGATAGAAACGGGGACTGGTACACTACTAGGGTGGACACCACTTCTTTCAATTATTAAATTGTCTGAACCTGGTTTGAGATTGTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC-ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA-TACAGCATTCC-GATTG--AATCGTCTGGCAGC-AAACTGAT-GA-CCATGCAATA-AATAAAATTTCTTTTT--CCATCGTTTAGCA-CCT-CTTCGGTAC-ATATTANNTA-CTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCCACTTTTAATTCCATTTCCGAGGAAATAACGATAGGGTCGTGTTCTTCGTCGATCCATTTTATTGTAAATGGTTGATCTTTGGTGAAACTACACAATTCTCGGACTTGTTGGTCAATGACCTGAAGATTAGCTGACAACGGACAGCTCGTCACCATTGCAACAGAATTATGTATATACTTGATTTGAAGTGTATTTGAGTTTAGAGAGGACATTGCTACCACAGATGGGGAAGCCTCAAACAGTAGCGCAAAAT]
[+] EMBL CD140987 [TTCAATGACAAAGAATAATCTTTTTCTAGTTTGGAAACACGAGTGTAAACCAACTAAGAATGGATGGTTAGTAGCGCATTCAAATACATGTTTTTCTGTTTGAACCCAATCAATATCCTCTTCATCAAGAATAGTTTCTTTTTTAATAACTTTCATTGCATATATACGGTTAGTTGGTTTATGCTCTACTTGAAATACTTTAGCATAACTACCACGACCAATCACTTTGTGTTTTCTG ]
[-] EMBL AI976639 [ ATGCTCTACTTGAAATACTTTAGCATAACTACCACGACCAATCACTTTGAGTAAATTGAAATCATGTAAACCAACCCGTCCAGAAGTGATTGGAATATCAGGAATATCTATAATGCGCTGTTCTATGATTGGTATGGACTTATCATCAACTTTATCAATGATAGAAACGGGGACTGGTACACTACTAGGGTGGACACCACTTCTTTCAATTATTAAATTGTCTGAACCTGGTTTGAGATTGTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTC ]
[+] EMBL CD190180 [ AATATCAGGAATATCTATAATGCGCTGTTCTATGATTGGTATGGACTTATCATCAACTTTATCAATGATAGAAACGGGGACTGGTACACTACTAGGGTGAACACCACTTCTTTCAATTATTAAATTGTCTGAACCTGGTTTGAGATTGTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCCNACCTTGAC ACGACGATGAAGTAGAAGACGAACATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGNTAGCACANTACAGCATTCCNGATTGGAAATCGTCTGGCAGCAAAACTGATGGACCCATGCANTANNATAAATTTCCTTTTTTCCCATCGTTTAGCACCCT CTTCCGTACAATATAANNTA ]
[+] EMBL CD133588 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCACCTTTGTATGATTGAACAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGA AGATTTGTTG ]
[+] EMBL CD189209 [ GTTTTTTATATCGGATGTTGGCGTAATGCGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTGTTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTNCGTAC ATATT ]
[+] EMBL CD133550 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGC TTTTTTTTCTCTTGCTTTGGCGGTCTTGGGTCATCTTTGTATGATTGAACAGTAACATGAAGACGAGGCGGGAGTGTATT ]
[+] EMBL CD188976 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATc ]
[+] EMBL CD132676 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAACAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC ANACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATT ]
[+] EMBL CD183210 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATT ]
[+] EMBL CD133080 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGACTTGGTTCATCTTTGTATGATTGAACAGTAACAGGAATACGAGGCG ]
[+] EMBL CD189426 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATT ]
[+] EMBL CD183463 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCCTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGCCAGC AAACTGAT GA CCATGCCATA AATAAAATTTCTTTTT CCATCGTNTAGCA CCTCCTTC GTAC ATATT ]
[+] EMBL CD188821 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAAAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCC ]
[+] EMBL CD133560 [ GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAACAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTAT ]
[-] EMBL CD189014 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ]
[-] EMBL CD183228 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ]
[-] EMBL CD183524 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTGTTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ]
[-] EMBL CD188846 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATNTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ]
[-] EMBL CD189484 [ TTTTTTATATCGGATGTTGGCTTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTCACTTAAAGCAATGATATTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ]
[-] EMBL CD133268 [ TTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATNTGATTCTCTTTCACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAACAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTTTGATAAATGCTTCACCACATTTATGGCGCACTC ]
[-] EMBL CD189854 [ TATGATTGAATAGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTATGGTTGTAGGTCTGTTCCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ]
[+] EMBL CD128079 [ GCTTCACCACATTTATGGCGCACTCC ACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCGAACCCCATATACGTTCCTTACAGTAAGCACA TACAGCATTCC GATTG AATCGTCTGGCAGC AAACTGAT GA CCATGCAATA AATAAAATTTCTTTTT CCATCGTTTAGCA CCT CTTCGGTAC ATATTA ATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCCACTTTTAATTCCATTTCCGAGGAAATAACGATAGGGTCGTGTTCTTCGTCGATCCATTTTATTGTAAATGGTTGATCTTTGGTGAAACTACACAATTCTCGGACTTGTTGGTCAATGACCTGAAGATTAGCTGACAACGGACAGCTCGTCACCATTGCAACAGAATTATGTATATACTTGATTTGAAGTGTATTTGAGTTTAGAGAGGACATTGCTACCACAGATGGGGAAGCCTCAAACAGTAGCGCA ]
[+] EMBL CD180938 [ TACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCCTCTTTTAATTCCATTTCCGAGGAAATAACGATAGGGTCGTGTTCTTCGTCGATCCATTTTATTGTAAATGGTTGATCTTTGGTGAAACTACACAATTCTCGGACTTGTTGGTCAATGACCTGAAGATTAGCTGACAACGGACAGCTCGTCACCATTGCAACAGAATTATGTACATACTTGATTTGAAGTGTATTTGAGTTTAGAGAGGACATTGCTACCACAGATGGGGAAGCCTCAAACAGTAGCGCAAAAT]
consensusID : consensus_10948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[TATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACATACAGCATTCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATAAATGAACCGTTAGTTGCCACCTACCGTTTCACAATGGGG]
[-] EMBL CD127273 [TATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGTAGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCGCACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACATACAGCATTCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATAAATGAACCGTTAGTTGCCACCTACCGTTTCACAATGGGG]
consensusID : consensus_10948#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[CTTCACCACATTTATGGCGCACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACATACAGCATTCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCTCTTTTAATCCATTCCGAGGAAATAACGATAGGGTCACCTACTATT]
[-] EMBL CD127975 [CTTCACCACATTTATGGCGCACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAATTAATACATTTAAACCCTTGTTGTCCCAAACCCCATATACGTTCCTTACAGTAAGCACATACAGCATTCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAACCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACGCTCTTTTAATCCATTCCGAGGAAATAACGATAGGGTCACCTACTATT]
consensusID : consensus_10948#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence
[GTATGATTGGGGGAGGTATATATGAGGGAATGTTGAAAAAGATATAAAGGAAAAAAAATATTTAATAAATCTAAGCTAGTACAACCCGTTATGAGCTGTGTAATGTTGGTAACCGATAAAAAGCATTCCTAAAAAATACTAGTGAATTTACCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATT]
[+] EMBL CD190030 [GTATGATTGGGGGAGGTATATATGAGGGAATGTTGAAAAAGATATAAAGGAAAAAAAATATTTAATAAATCTAAGCTAGTACAACCCGTTATGAGCTGTGTAATGTTGGTAACCGATAAAAAGCATTCCTAAAAAATACTAGTGAATTTACCCGATTGAATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAGCACCTCTTCGGTACATATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10948#0 TTCAATGACAAAGAATAATCTTTTTCTAGTTTGGAAACACGAGTGTAAACCAACTAAGAA 60
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 TGGATGGTTAGTAGCGCATTCAAATACATGTTTTTCTGTTTGAACCCAATCAATATCCTC 120
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 TTCATCAAGAATAGTTTCTTTTTTAATAACTTTCATTGCATATATACGGTTAGTTGGTTT 180
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 ATGCTCTACTTGAAATACTTTAGCATAACTACCACGACCAATCACTTTGTGTTTTCTGAA 240
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 ATCATGTAAACCAACCCGTCCAGAAGTGATTGGAATATCAGGAATATCTATAATGCGCTG 300
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 TTCTATGATTGGTATGGACTTATCATCAACTTTATCAATGATAGAAACGGGGACTGGTAC 360
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 ACTACTAGGGTGGACACCACTTCTTTCAATTATTAAATTGTCTGAACCTGGTTTGAGATT 420
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 GTTTTTTATATCGGATGTTGGCGTAATGTGTTTGTCTGATGTTTGATTTGATTCTCTTTC 480
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 ACTTAAAGCAATGATTTTCTCTTGCTTTGGTGGTCTTGGTTCATCTTTGTATGATTGAAT 540
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 AGTAACAGGAAGACGAGGCGGGAGTGTATTACTTGTTTCAGAAGATAGATTTGTTGCTAT 600
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 GGTTGTAGGTCTGTTTCCATTATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGT 660
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 --------------------TATTATCCCACACAGTAGGAGTGGAACCGGTGGAAAATGT 40
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 AGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCG 720
consensus_10948#2 -----------------------------------------CTTCACCACATTTATGGCG 19
consensus_10948#1 AGAGATTGAACGCATATTTTGATAGGTCGGTCTGATAAATGCTTCACCACATTTATGGCG 100
consensus_10948#3 ---------------------GTATGATTGGGGGAGGTATATATGAGGGAATGTTGAAAA 39
* * ** *
consensus_10948#0 CACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAAT-TAATACATTTAAACCCTT 779
consensus_10948#2 CACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAAT-TAATACATTTAAACCCTT 78
consensus_10948#1 CACTCCACCTTGACAACGACGATGAAGTAGAAGACGACAAT-TAATACATTTAAACCCTT 159
consensus_10948#3 AGATATAAAGGAAAAAAAATATTTAATAAATCTAAGCTAGTACAACCCGTTATGAGCTGT 99
* * * ** * * ** * * * * * ** * ** * * *
consensus_10948#0 GTTGTCCCAA-ACCCCATATACGTTCCTTACAGTAAGCACATACAGCATT--CCGATTGA 836
consensus_10948#2 GTTGTCCCAA-ACCCCATATACGTTCCTTACAGTAAGCACATACAGCATT--CCGATTGA 135
consensus_10948#1 GTTGTCCCAA-ACCCCATATACGTTCCTTACAGTAAGCACATACAGCATT--CCGATTGA 216
consensus_10948#3 GTAATGTTGGTAACCGATAAAAAGCATTCCTAAAAAATACTAGTGAATTTACCCGATTGA 159
** * * ** *** * * * ** ** ** ********
consensus_10948#0 ATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAG 896
consensus_10948#2 ATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAG 195
consensus_10948#1 ATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAG 276
consensus_10948#3 ATCGTCTGGCAGCAAACTGATGACCATGCAATAAATAAAATTTCTTTTTCCATCGTTTAG 219
************************************************************
consensus_10948#0 CACCTCTTCGGTACATATTANNTACTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAA 956
consensus_10948#2 CACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAA 255
consensus_10948#1 CACCTCTTCGGTACATATTAATATCTTCGCCAGGACAGGGTTTACCCGGCTCACTTGGAA 336
consensus_10948#3 CACCTCTTCGGTACATATT----------------------------------------- 238
*******************
consensus_10948#0 CCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACG 1016
consensus_10948#2 CCCCATTAAATACATGAACCGTTAGTTGCCATTCTTTATTTACTTCGTGAAGTCGGAACG 315
consensus_10948#1 CCCCATTAAATAAATGAACCGTTAGTTGCCACCTACCGTTT-CACAATGGGG-------- 387
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 CCACTTTTAATTCCATTTCCGAGGAAATAACGATAGGGTCGTGTTCTTCGTCGATCCATT 1076
consensus_10948#2 CT-CTTTTAATCCA--TTCCGAGGAAATAACGATAGGGTCACCTACTATT---------- 362
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 TTATTGTAAATGGTTGATCTTTGGTGAAACTACACAATTCTCGGACTTGTTGGTCAATGA 1136
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 CCTGAAGATTAGCTGACAACGGACAGCTCGTCACCATTGCAACAGAATTATGTATATACT 1196
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 TGATTTGAAGTGTATTTGAGTTTAGAGAGGACATTGCTACCACAGATGGGGAAGCCTCAA 1256
consensus_10948#2 ------------------------------------------------------------
consensus_10948#1 ------------------------------------------------------------
consensus_10948#3 ------------------------------------------------------------
consensus_10948#0 ACAGTAGCGCAAAAT 1271
consensus_10948#2 ---------------
consensus_10948#1 ---------------
consensus_10948#3 ---------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||