cluster # 10953

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Schistosoma mansoni
cluster # 10953 cluster # 10953 Sequences # 26 consensus # 7

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10953#0 length = 703 sequences # 6
consensus_10953#1 length = 686 sequences # 14
consensus_10953#2 length = 597 sequences # 2

consensus_10953#3 length = 444 sequences # 1
consensus_10953#4 length = 348 sequences # 1
consensus_10953#5 length = 91 sequences # 1
consensus_10953#6 length = 83 sequences # 1

consensusID : consensus_10953#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 703
fasta sequence

                              [GGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGAATAATCTTTAAAAAAAAAAAAAAAAA]

[+] EMBL CD078446             [GGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTNTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATT                                                                                         ]
[+] EMBL CD082856             [                                              GATT AAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGNGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG                           ]
[-] EMBL CD074711             [                                                                              TTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTTTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACAAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTTTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCCCGTAATGAAGAAGAGTACTTTTATCGATTGCACCACCCCCAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCCCTCAAAAGAAGAAAAAAATTACTGGATGATTTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGCCCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTTTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGA                          ]
[-] EMBL AI395729             [                                                                                                                                                                                                                                  TGAA  CTTTGTCTATT GGTGTACCCGTAT TATCCTTGTGATG ATTGNGACGA GTGCAGGCAA GGTTGT GTACT GTTGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGAATAATCTTTAAAAAAAAAAAAAAAAA]
[-] EMBL AI395726             [                                                                                                                                                                                                                                              CTATTTGGTTTATCCGTATGTAT CTTGTGATTGATTGGGACGA GTGCAGGCAA GGT GTTGTACT GTTGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTATTGAAGAAGA TACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTGGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGAATAATCTTTAAAAAAAAAAAAAAAAA]
[+] EMBL CD133755             [                                                                                                                                                                                                                                                                                                                                                                         AAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGAT                                                                 ]




>consensus_10953#0
GGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCT
CACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCT
AGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTC
ATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCT
ATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGT
GGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAAT
GAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTA
GAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGA
AGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAA
ATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATA
TGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAA
TGATGATAAATTACTGAATAATCTTTAAAAAAAAAAAAAAAAA

consensusID : consensus_10953#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 686
fasta sequence

                              [AATTATATTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG-AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA-TTCGGG-ATGCTGGTGGAGCATTTGGCAAATTAGAAG-CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTT-ACGGATTTTGTTTCAAAG]

[+] EMBL CD145428             [AATTATATTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCG                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD131470             [       TTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACGGAATTATGCAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAA                                                                                                                                                                                                                                        ]
[+] EMBL CD171266             [                                                                                                                                                                                         ATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCANATTAGACGCCACGT ATGAAGAAGAGTACTTCTATCGATTGCAACANC ACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAtg                                                                                                                                                                                   ]
[+] EMBL CD171399             [                                                                                                                                                                                                   TGTTAACCTTCATCCCTCAAAATTTGATGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTACTTCGGGAATGCTGGTGGAGCATTTGGCAAATTAAAAG CACGTAATGAAG                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD149952             [                                                                                                                                                                                                      TAACCTTCATCCCTCAGGATTTGGAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGAATGTATCCTGGTGATG AATTGGGACGACGTGCAGGCAATGGTGGTGGTACTGGTGGTTCTA T                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BE505112             [                                                                                                                                                                                                                        ATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTANTTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTT ACGGGTTTTGTTTCAAAG]
[+] EMBL CD133860             [                                                                                                                                                                                                                                     GCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAAAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGCTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAG AAAAAATTACTGGA                                                                                                                                                                    ]
[-] EMBL CD127093             [                                                                                                                                                                                                                                                        TTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATTCTGAGA                                                                                                                                                         ]
[+] EMBL CD145820             [                                                                                                                                                                                                                                                                                                                                          ACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATT                                                                                                                                                                          ]
[+] EMBL CD181918             [                                                                                                                                                                                                                                                                                                                                                                          GCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATT                                                                                                                                                ]
[+] EMBL CD131298             [                                                                                                                                                                                                                                                                                                                                                                                                       AAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTTAACGGAT            ]
[+] EMBL CD131609             [                                                                                                                                                                                                                                                                                                                                                                                                       AAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTTAACGGAT            ]
[+] EMBL CD131589             [                                                                                                                                                                                                                                                                                                                                                                                                                     TATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAAGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTTAACGGATT           ]
[+] EMBL CD131626             [                                                                                                                                                                                                                                                                                                                                                                                                                     TATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAGCGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTTAACGGAT            ]




>consensus_10953#1
AATTATATTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAA
GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTT
GAATACATTAGAACCTAGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATAT
TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACC
CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT
TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAG
CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC
AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA
AACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGC
ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT
AGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCC
ACATATTTACGGATTTTGTTTCAAAG

consensusID : consensus_10953#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 597
fasta sequence

                              [AGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGTTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAANNNNNNNNNNNNNNNNNATGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAA]

[+] EMBL CD080877             [AGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGTTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAANNNNNNNNNNNNNNNNNATGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAA]
[-] EMBL CD191470             [                                       TCAATACAAGTTTTTGGTTTGCATTAGATTAGACGTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTG                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_10953#2
AGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTG
CATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAG
ATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCA
AAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTG
ATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGTTTGGCAAATTAGAAGCA
CGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAG
CATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTC
AAAAGAAGAAANNNNNNNNNNNNNNNNNATGAGAAGAAGCATTAATTGACAGGATCCGGA
AAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGC
ATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAA

consensusID : consensus_10953#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [TTTTCGGCGGGTAACTGGTGCAGACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCGAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACACGAACGTGAAAAGAAGGAGATCAAACGACTTGA]

[+] EMBL CD131529             [TTTTCGGCGGGTAACTGGTGCAGACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCGAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACACGAACGTGAAAAGAAGGAGATCAAACGACTTGA]




>consensus_10953#3
TTTTCGGCGGGTAACTGGTGCAGACCACTTATTCTTCAGAAATATAAGATCAAGAGATTA
AAGAAAGCTCACTAAATCAATACAAGTTTTTGGAGATACTCCTACGGAATTATACAGTCC
AATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGT
GGTGCTCGAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTA
TCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCG
GGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCG
ATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACACGAACGTGA
AAAGAAGGAGATCAAACGACTTGA

consensusID : consensus_10953#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [TCAAACGACTTGAAGAATCACGTTCATGTTCATCTTCTAAATACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGNNATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG]

[+] EMBL SMAA8281             [TCAAACGACTTGAAGAATCACGTTCATGTTCATCTTCTAAATACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGNNATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG]




>consensus_10953#4
TCAAACGACTTGAAGAATCACGTTCATGTTCATCTTCTAAATACTTCTATCGATTGCAAC
AACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGG
AGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGA
AGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGA
TATTATAGATTGNNATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGA
TTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG

consensusID : consensus_10953#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence

                              [CGCGGTACCCCTTTGAACTCACCTTCAAATTTTGAGGGATGAAGGTTAACAAACGTTGCATGTCTAATATATCTGAAATTGGACTGTAGGA]

[+] EMBL CD128751             [CGCGGTACCCCTTTGAACTCACCTTCAAATTTTGAGGGATGAAGGTTAACAAACGTTGCATGTCTAATATATCTGAAATTGGACTGTAGGA]




>consensus_10953#5
CGCGGTACCCCTTTGAACTCACCTTCAAATTTTGAGGGATGAAGGTTAACAAACGTTGCA
TGTCTAATATATCTGAAATTGGACTGTAGGA

consensusID : consensus_10953#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 83
fasta sequence

                              [GCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGGCACAAACACAGNTACATGAATTNAAGAAGCA]

[+] EMBL CD138514             [GCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGGCACAAACACAGNTACATGAATTNAAGAAGCA]




>consensus_10953#6
GCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGGCACAAACA
CAGNTACATGAATTNAAGAAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10953#3      -------TTTTCGGCGGGTAACTGGTGCAGACCACTTATTCTTCAGAAATATAAGATCAA 53
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      AATTATATTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAA 60
consensus_10953#2      --------------------------------------------AGAAATATAAGATCAA 16
consensus_10953#0      ----------------GGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAA 44
consensus_10953#4      ------------------------------------------------------------
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGG-------------------- 93
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTT 120
consensus_10953#2      GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTT 76
consensus_10953#0      GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTT 104
consensus_10953#4      ------------------------------------------------------------
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      -------------------AGATACTCCTACGGAATTATACAGTCCAATTTCAGATATAT 134
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      GAATACATTAGAACCTAGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATAT 180
consensus_10953#2      GAATACATT----------AGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATAT 126
consensus_10953#0      GAATACATT----------AGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATAT 154
consensus_10953#4      ------------------------------------------------------------
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCGAAGACC 194
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACC 240
consensus_10953#2      TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACC 186
consensus_10953#0      TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACC 214
consensus_10953#4      ------------------------------------------------------------
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT 254
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT 300
consensus_10953#2      CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT 246
consensus_10953#0      CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT 274
consensus_10953#4      ------------------------------------------------------------
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAG 314
consensus_10953#6      -----------------------------------------------------------G 1
consensus_10953#1      TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAG 360
consensus_10953#2      TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTG--------------------------G 280
consensus_10953#0      TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAG 334
consensus_10953#4      ------------------------------------------------------TCAAAC 6
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC 374
consensus_10953#6      CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGGCACAAACAC 61
consensus_10953#1      CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC 420
consensus_10953#2      TGTTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC 340
consensus_10953#0      CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC 394
consensus_10953#4      GACTTGAAGAATCACGTTCATGTTCATCTTCTAAATACTTCTATCGATTGCAACAACAAC 66
consensus_10953#5      ------------------CGCGGTACCCCTTTGAACTCACCTTCAAATTTTGAGGGATGA 42
                                         *  *           *   *  **    ***   *       

consensus_10953#3      AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACACGAACGTGAAAAGAAGGAGATCA 434
consensus_10953#6      AGNTACATGAATTNAAGAAGCA-------------------------------------- 83
consensus_10953#1      AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA 480
consensus_10953#2      AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA 400
consensus_10953#0      AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA 454
consensus_10953#4      AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA 126
consensus_10953#5      AG----GTTAACAAACGTTGCATGTCTAATAT--ATCTGAAATTGGACTGTAGGA----- 91
                       **     * **   * *  ***                                      

consensus_10953#3      AACGACTTGA-------------------------------------------------- 444
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      AACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGC 540
consensus_10953#2      AACGACTTGAAGAATCACTCAAAAGAAGAAANNNNNNNNNNNNNNNNNATGAGAAGAAGC 460
consensus_10953#0      AACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGC 514
consensus_10953#4      AACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGC 186
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      ------------------------------------------------------------
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT 600
consensus_10953#2      ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT 520
consensus_10953#0      ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT 574
consensus_10953#4      ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT 246
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      ------------------------------------------------------------
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      AGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCC 660
consensus_10953#2      AGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAAC 580
consensus_10953#0      AGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAAC 634
consensus_10953#4      AGATTGNNATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAAC 306
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      ------------------------------------------------------------
consensus_10953#6      ------------------------------------------------------------
consensus_10953#1      ACATATTTACGGATTTTGTTTCAAAG---------------------------------- 686
consensus_10953#2      GGATTTATGTATTCAAA------------------------------------------- 597
consensus_10953#0      GGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGAATAATCTTTAAAAAAAA 694
consensus_10953#4      GGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG------------------ 348
consensus_10953#5      ------------------------------------------------------------
                                                                                   

consensus_10953#3      ---------
consensus_10953#6      ---------
consensus_10953#1      ---------
consensus_10953#2      ---------
consensus_10953#0      AAAAAAAAA 703
consensus_10953#4      ---------
consensus_10953#5      ---------