These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 703 fasta sequence [GGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGAATAATCTTTAAAAAAAAAAAAAAAAA] [+] EMBL CD078446 [GGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTNTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATT ] [+] EMBL CD082856 [ GATT AAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGNGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG ] [-] EMBL CD074711 [ TTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTTTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACAAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTTTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCCCGTAATGAAGAAGAGTACTTTTATCGATTGCACCACCCCCAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCCCTCAAAAGAAGAAAAAAATTACTGGATGATTTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGCCCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTTTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGA ] [-] EMBL AI395729 [ TGAA CTTTGTCTATT GGTGTACCCGTAT TATCCTTGTGATG ATTGNGACGA GTGCAGGCAA GGTTGT GTACT GTTGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGAATAATCTTTAAAAAAAAAAAAAAAAA] [-] EMBL AI395726 [ CTATTTGGTTTATCCGTATGTAT CTTGTGATTGATTGGGACGA GTGCAGGCAA GGT GTTGTACT GTTGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTATTGAAGAAGA TACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTGGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGAATAATCTTTAAAAAAAAAAAAAAAAA] [+] EMBL CD133755 [ AAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGAT ] consensusID : consensus_10953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 686 fasta sequence [AATTATATTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG-AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA-TTCGGG-ATGCTGGTGGAGCATTTGGCAAATTAGAAG-CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTT-ACGGATTTTGTTTCAAAG] [+] EMBL CD145428 [AATTATATTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCG ] [+] EMBL CD131470 [ TTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACGGAATTATGCAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAA ] [+] EMBL CD171266 [ ATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCANATTAGACGCCACGT ATGAAGAAGAGTACTTCTATCGATTGCAACANC ACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAtg ] [+] EMBL CD171399 [ TGTTAACCTTCATCCCTCAAAATTTGATGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTACTTCGGGAATGCTGGTGGAGCATTTGGCAAATTAAAAG CACGTAATGAAG ] [+] EMBL CD149952 [ TAACCTTCATCCCTCAGGATTTGGAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGAATGTATCCTGGTGATG AATTGGGACGACGTGCAGGCAATGGTGGTGGTACTGGTGGTTCTA T ] [+] EMBL BE505112 [ ATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTANTTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTT ACGGGTTTTGTTTCAAAG] [+] EMBL CD133860 [ GCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAAAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGCTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAG AAAAAATTACTGGA ] [-] EMBL CD127093 [ TTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATG AATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATTCTGAGA ] [+] EMBL CD145820 [ ACTGGTGGTTCTA TTCGGG ATGCTGGTGGAGCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATT ] [+] EMBL CD181918 [ GCATTTGGCAAATTAGAAG CACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATT ] [+] EMBL CD131298 [ AAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTTAACGGAT ] [+] EMBL CD131609 [ AAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTTAACGGAT ] [+] EMBL CD131589 [ TATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAAGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTTAACGGATT ] [+] EMBL CD131626 [ TATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAGCGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCCACATATTTAACGGAT ] consensusID : consensus_10953#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence [AGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGTTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAANNNNNNNNNNNNNNNNNATGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAA] [+] EMBL CD080877 [AGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGTTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAANNNNNNNNNNNNNNNNNATGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAA] [-] EMBL CD191470 [ TCAATACAAGTTTTTGGTTTGCATTAGATTAGACGTTGAATACATTAGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTG ] consensusID : consensus_10953#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [TTTTCGGCGGGTAACTGGTGCAGACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCGAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACACGAACGTGAAAAGAAGGAGATCAAACGACTTGA] [+] EMBL CD131529 [TTTTCGGCGGGTAACTGGTGCAGACCACTTATTCTTCAGAAATATAAGATCAAGAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATATTAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCGAAGACCCCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAATTGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAGCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACACGAACGTGAAAAGAAGGAGATCAAACGACTTGA] consensusID : consensus_10953#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [TCAAACGACTTGAAGAATCACGTTCATGTTCATCTTCTAAATACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGNNATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG] [+] EMBL SMAA8281 [TCAAACGACTTGAAGAATCACGTTCATGTTCATCTTCTAAATACTTCTATCGATTGCAACAACAACAGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCAAACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGCATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTATAGATTGNNATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAACGGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG] consensusID : consensus_10953#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 91 fasta sequence [CGCGGTACCCCTTTGAACTCACCTTCAAATTTTGAGGGATGAAGGTTAACAAACGTTGCATGTCTAATATATCTGAAATTGGACTGTAGGA] [+] EMBL CD128751 [CGCGGTACCCCTTTGAACTCACCTTCAAATTTTGAGGGATGAAGGTTAACAAACGTTGCATGTCTAATATATCTGAAATTGGACTGTAGGA] consensusID : consensus_10953#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 83 fasta sequence [GCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGGCACAAACACAGNTACATGAATTNAAGAAGCA] [+] EMBL CD138514 [GCATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGGCACAAACACAGNTACATGAATTNAAGAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10953#3 -------TTTTCGGCGGGTAACTGGTGCAGACCACTTATTCTTCAGAAATATAAGATCAA 53 consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 AATTATATTTTCGGCGGGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAA 60 consensus_10953#2 --------------------------------------------AGAAATATAAGATCAA 16 consensus_10953#0 ----------------GGTAACTGGTGCAAACCACTTATTCTTCAGAAATATAAGATCAA 44 consensus_10953#4 ------------------------------------------------------------ consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGG-------------------- 93 consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTT 120 consensus_10953#2 GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTT 76 consensus_10953#0 GAGATTAAAGAAAGCTCACTAAATCAATACAAGTTTTTGGTTTGCATTAGATTAGACTTT 104 consensus_10953#4 ------------------------------------------------------------ consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 -------------------AGATACTCCTACGGAATTATACAGTCCAATTTCAGATATAT 134 consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 GAATACATTAGAACCTAGGAGATACTCCTACGGAATTATACAGTCCAATTTCAGATATAT 180 consensus_10953#2 GAATACATT----------AGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATAT 126 consensus_10953#0 GAATACATT----------AGAACCTAGGAGATACTCCTACAGTCCAATTTCAGATATAT 154 consensus_10953#4 ------------------------------------------------------------ consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCGAAGACC 194 consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACC 240 consensus_10953#2 TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACC 186 consensus_10953#0 TAGACATGCAACGTTTGTTAACCTTCATCCCTCAAAATTTGAAGGTGGTGCTCAAAGACC 214 consensus_10953#4 ------------------------------------------------------------ consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT 254 consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT 300 consensus_10953#2 CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT 246 consensus_10953#0 CCATGACGTTCCTGAAACCTTTGTCTATTGGGTGTATCCGTATGTATCCTGGTGATGAAT 274 consensus_10953#4 ------------------------------------------------------------ consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAG 314 consensus_10953#6 -----------------------------------------------------------G 1 consensus_10953#1 TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAG 360 consensus_10953#2 TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTG--------------------------G 280 consensus_10953#0 TGGGACGAGGTGCAGGCAAGGGTGGTGGTACTGGTGGTTCTATTCGGGATGCTGGTGGAG 334 consensus_10953#4 ------------------------------------------------------TCAAAC 6 consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC 374 consensus_10953#6 CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGGCACAAACAC 61 consensus_10953#1 CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC 420 consensus_10953#2 TGTTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC 340 consensus_10953#0 CATTTGGCAAATTAGAAGCACGTAATGAAGAAGAGTACTTCTATCGATTGCAACAACAAC 394 consensus_10953#4 GACTTGAAGAATCACGTTCATGTTCATCTTCTAAATACTTCTATCGATTGCAACAACAAC 66 consensus_10953#5 ------------------CGCGGTACCCCTTTGAACTCACCTTCAAATTTTGAGGGATGA 42 * * * * ** *** * consensus_10953#3 AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACACGAACGTGAAAAGAAGGAGATCA 434 consensus_10953#6 AGNTACATGAATTNAAGAAGCA-------------------------------------- 83 consensus_10953#1 AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA 480 consensus_10953#2 AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA 400 consensus_10953#0 AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA 454 consensus_10953#4 AGTTACATGAATTAAAGAAGCATTTAGAAGATGAACATGAACGTGAAAAGAAGGAGATCA 126 consensus_10953#5 AG----GTTAACAAACGTTGCATGTCTAATAT--ATCTGAAATTGGACTGTAGGA----- 91 ** * ** * * *** consensus_10953#3 AACGACTTGA-------------------------------------------------- 444 consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 AACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGC 540 consensus_10953#2 AACGACTTGAAGAATCACTCAAAAGAAGAAANNNNNNNNNNNNNNNNNATGAGAAGAAGC 460 consensus_10953#0 AACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGC 514 consensus_10953#4 AACGACTTGAAGAATCACTCAAAAGAAGAAAAAAATTACTGGATGATCTTGAGAAGAAGC 186 consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 ------------------------------------------------------------ consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT 600 consensus_10953#2 ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT 520 consensus_10953#0 ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT 574 consensus_10953#4 ATTAATTGACAGGATCCGGAAAGAAAATGACCATTTTCATAGGCTTGTATTAGATATTAT 246 consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 ------------------------------------------------------------ consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 AGATTGAAATTCTATTTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTGCC 660 consensus_10953#2 AGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAAC 580 consensus_10953#0 AGATTGAAATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAAC 634 consensus_10953#4 AGATTGNNATTCTAATTAGCATGATATGTATCTATGTATTTGTGTATATGTAGATTTAAC 306 consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 ------------------------------------------------------------ consensus_10953#6 ------------------------------------------------------------ consensus_10953#1 ACATATTTACGGATTTTGTTTCAAAG---------------------------------- 686 consensus_10953#2 GGATTTATGTATTCAAA------------------------------------------- 597 consensus_10953#0 GGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTGAATAATCTTTAAAAAAAA 694 consensus_10953#4 GGATTTATGTATTCAAAAAGTTAAAATGATGATAAATTACTG------------------ 348 consensus_10953#5 ------------------------------------------------------------ consensus_10953#3 --------- consensus_10953#6 --------- consensus_10953#1 --------- consensus_10953#2 --------- consensus_10953#0 AAAAAAAAA 703 consensus_10953#4 --------- consensus_10953#5 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||