cluster # 10962

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Schistosoma mansoni
cluster # 10962 cluster # 10962 Sequences # 26 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10962#0 length = 1783 sequences # 25

consensus_10962#1 length = 300 sequences # 1

consensusID : consensus_10962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 25
consensus length = 1783
fasta sequence

                              [TGATTCATTCTACCACCGAGAACACGAATGTCAGCTTCCAATAAATTATGCTTTTGCAAGAGATCCTCAACACCCATTAAATGTTTACCATAATCCTGAGACTTAAGACGGCTCTTTATTTCTTCGATCCAATCCATCAAATAGGTCATTTCTTGGAAGATATGTTGTAACTGTAAACTTAGTTCTAGATGCTGGCGTCTAATGCTGAGTGAGTCCAGTAGATTACGCCACATGGCAAGTACTTTGTCCCTCCGTAACTGGATATTTTCATGAGCATGATAATTTTCTCTCTTCAGCTCCTCTGCAACATTGACCATAGCATTTACACGCTCTTCATATGCATATATATCTGTCTCTATGGCTTCATGCTTCTTTGTTGCAGCCTCAACAGCAGCAAGGTTATCACCAAAGAACTCTTGCAAAACGAGCCGCTGATTATCTGTAAGCCAAGTTTCTCGCATTCCAGCTTTGCGATCGAAACGAGAGGCAAGTTGTTCCAACTTCTCCTGACGTATAAGTTCATCTCGTACAGCTAATTCGCGTGCATGTTCAGCTCTTTCAAGCATTTCCCAGGCACGATTTATATCTGCTATCATTTTTCCTTCAGGTGGATTATATTGTCTTTGATTGTTGGCACGCATTTTACTGCGAATAGTGAAGAGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGGGGTTTTTCGACGGTTCGGTAAGTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCGTCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATATTGATTAATCATGTCATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAGTGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGATTTAATTTTTCTTCGGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTAGACAGTTTGGAGTATTCAATCAGATC-AGGTCGGTGCTTATGAATTAAAGCATTGAAAGCCAAACCATCACGCCAACTTGTCGTAAAGTTCCGAACATTTACATTGGGATAACCTGCAGTTTTCATTTGGCACCACAATAACAAAGCGTCTTTAGCGCATCGAGTTTCACTTGTCTGATATTCTTCAACAATTATATCTTGGATTTGGAAACGCAAAATAATTGTCCAGATAAGTCCAAGTGTTAGTCGTGAATTTCCGTCTACGATATCGTGAGCACCCACATTTTCTAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGGGAGTTTACCCATTTTGTGAATGTCTTTTTCTGAACGACCTCACGTTCATCTGCAAGTGCTTTAATACGCGATCGTTCGTACAGTTTTGCTGTACTGTTTCCACTTTCGAATTCATCCTCATCAGATGTATAATTAGCATTCTGTATGTTATTGGGTTCCCAGTGCAAATTTTGATGGATTGCCTGGATCTCCATCTCAGACAAAGTCTCTAACCTTAGTTTCA]

[+] EMBL CD188776             [TGATTCATTCTACCACCGAGAACACGAATGTCAGCTTCCAATAAATTATGCTTTTGCAAGAGATCCTCAACACCCATTAAATGTTTACCATAATCCTGAGACTTAAGACGGCTCTTTATTTCTTCGATCCAATCCATCAAATAGGTCATTTCTTGGAAGATATGTTGTAACTGTAAACTTAGTTCTAGATGCTGGCGTCTAATGCTGAGTGAGTCCAGTAGATTACGCCACATGGCAAGTACTTTGTCCCTCCGTAACTGGATATTTTCATGAGCATGATAATTTTCTCTCTTCAGCTCCTCTGCAACATTGACCATAGCATTTACACGCTCTTCATATGCATATATATCTGTCTCTATGGCTTCATGCTTCTTTGTTGCAGCCTCAACAGCAGCAAGGTTATCACCAAAGAACTCTTGCAAAACGAGCCGCTGATTATCTGTAAGCTAAGTTTCTCGCATTCCAGCCTTGCGATCGAAACGAGAGGCAAGTTGTTCCAACTTCTCCTGACGTATAAGTTCATCTCGTACAGCTAATTCGCGTGCATGTTCAGCTCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD183515             [ GATTCATTCTACCACCGAGAACACGAATGTCAGCTTCCAATAAATTATGCTTTTGCAAGAGATCCTCAACACCCATTAAATGTTTACCATAATCCTGAGACTTAAGACGGCTCTTTATTTCTTCGATCCAATCCATCAAATAGGTCATTTCTTGGAAGATATGTTGTAACTGTAAACTTAGTTCTAGATGCTGGCGTCTAATGCTGAGTGAGTCCAGTAGATTACGCCACATGGCAAGTACTTTGTCCCTCCGTAACTGGATATTTTCATGAGCATGATAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD121241             [    TCATTCTACCACCGAGAACACGAATGTCAGCTTCCAATAAATTATGCTTTTGCAAGAGATCCTCAACACCCATTAAATGTTTACCATAATCCTGAGACTTAAGACGGCTCTTTATTTCTTCGATCCAATCCATCAAATAGGTCATTTCTTGGAAGATATGTTGTAACTGTAAACTTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD128921             [                                                                                    TTACCATAATCTTGAGACTTAAGACGGCTCTTTATTTTTTCGATCCAATCCATCAAATAGGTCATTTCTTGGAAGATATGTTGTAACTGTAAACTTAGTTCTAGATGCTGGCGTCTAATGCTGAGTGAGTCCAGTAGATTACGCCACATGGCAAGTACTTTGTCCCTCCGTAACTGGATATTTTCATGAGCATGATAATTTTCTCTCTTCAGCTCCTCTGCAACATTGACCATAGCATTTACACGCTCTTCATATGCATATATATCTGTCTCTATGGCTTCATGCTTCTTTGTTGCAGCCTCAACAGCAGCAAGGTTATCACCAAAGAACTCTTGCAAAACGAGCCGCTGATTATCTGTAAGCCAAGTTTCTCGCATTCCAGCTTTGCGATCGAAACGAGAGGCAAGTTGTTCCAACTTCTCCTGACGTATAAGTTCATCTCGTACAGCTAATTCGCGTGCATGTTCAGCTCTTTCAAGCATTTCCCAGGCACGATTTATATCTGCTATCGTTTTTCCTTCAaatg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD189303             [                                                                                                                                                                                       tgTAGATGCTGGCGTCTAA AAAGAGTGAGTCCAGTAGATTACGCCACATGGCAAGTACTTTGTCCCTCCGTAACTGGATATTTTCATGAGCATGATAATTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD120334             [                                                                                                                                                                                                                                                                                                                                                            TCTGTCTCTATGGCTTCATGCTTCTTTGTTGCAGCCTCAACAGCAGCAAGGTTATCACCAAAGAACTCTTGCAAAACGAGCCGCTGATTATCTGTAAGCCAAGTTTCTCGCATTCCAGCTTTGCGATCGAAACGAGAGGCAAGTTGTTCCAACTTCTCCTGACGTATAAGTTCATCTCGTACAGCTAATTCGCGTGCATGTTCAGCTCTTTCAAGCATTTCCCAGGCACGATTTATATCTGCTATCATTTTTCCTTCAGGTGGATTATATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD163739             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCGATCGAAACGAGAGGCAAGTTGTTCCAACTTCTCCTGACGTATAAGTTCATCTCGTACAGCTAATTCGCGTGCATGTTCAGCTCTTTCAAGCATTTCCCAGGCACGATTTATATCTGCTATCATTTTTCCTTCAGGTGGATTATATTGTCTTTGATTGTTGGCACGCATTTTACTGCGAATAGTGAAGAGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGGGGTTTTTCGACGGTTCGGTAAGTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCGTCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD192525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AATTCGCGTGCATGTTCAGCTCTTTCAAGCATTTCCCAGGCACGATTTATATCTGCTATCATTTTTCCTTCAGGTGGATTATATTGTCTTTGATTGTTGGCACGCATTTTACTGCGAATAGTGAAGAGTAAAACTTCAAGACCGCCTTTTTCTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD161416             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCTTTGATTGTTGGCACGCATTTTACTGCGAATAGTGAAGAGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGGGGTTTTTCGACGGTTCGGTAAGTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCGTCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATATTGATTAATCATGTCATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAGTGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGATTTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD065580             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCATTTTACTGCGAATAGTGAAGAGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGGGTTTTTTCGACGGTTCGGTAAGTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCGTCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATATTGATTAATCATGTTATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAGTGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGATTTAATTTTTCTTCGGCAACACAGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTAGACAGTTTGGAGTATTCAATCAGATCAAGGTCGGTGCTTATGAATTAAAGCATTGAAAGCC AACCATCACGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD179548             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTTTACTGCGAATAGTGAAGAGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGGGGTTTTTCGACGGTTCGGTAAGTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCGTCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATATTGATTAATCATGTCATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAGTGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGATTTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD179389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTTACTGCGAATAGTGAAGAGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGAGGTTTTTCGACGGTTCGGTAAGTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTAGGGTCGTCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATATTGATTAATCATGTCATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAGTGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGATTTAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD123081             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTTACTGCGAATAGTGAAGAGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGGGGTTTTTCGACGGTTCGGTAAGTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCGTCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATATTGATTAATCATGTCATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAGTGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGATTTAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD095235             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGTAAAACTTCAAGACCGCCTTNTTCTCTGAACTTGGGGGGTTTTTCGACGGTTCGGTAAGTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCGTCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATATTGATTAATCATGTCATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAGTGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGATTTAATTTTTCTTCGGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTAGACAGTTTGGAGTATTCAATCAGATC AGGTCGGTGCTTATGAATTAAAGCATTGAAAGCCAAACCATCACGCCAACTTGTCGTAAAGTTCCGAACATTTACATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD131917             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTATAATAGAGGATGAAGATTTAATTTTTCTTCGGCAACACTGAAGGCAGTACTCAccagag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD189711             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCCACGTCAGATGGTTCTAATAGAGGATGAAGATTTAATTTTTCTTCGGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTAGACAGTTTGGAGTATTCAATCAGATC AGGTCGGTGCTTATGAATTAAAGCATTGAAAGCCAAACCATCACGCCAACTTGTCGTAAAGTTCCGAACATTTACATTGGGATAACCTGCAGTTTTCATTTGGCACCACAATAACAAAGCGTCTTTAGCGCATCGAGTTTCACTTGTCTGATATTCTTCAACAATTATATCTTGGATTTGGAAACGCAAAATAATTGTCCAGATAAGTCCAAGTGTTAGTCGTGAATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD094941             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCACCACAATAACAAAGCGTCTTTAGCGCATCGAGTTTCACTTGTCTGATATTCTTCAACAATTATATCTTGGATTTGGAAACGCAAAATAATTGTCCAGATAAGTCCAAGTGTTAGTCGTGAATTTCCGTCTACGATATCGTGAGCACCCACATTTTCTAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGGGAGTTTACCCATTTTGTGAATGTCTTCTTCTGAACGACCTCACGTTCATCTGCAAGTGCTTTAATACGCGATCGTTCGTACAGTTTTGCTGTACTGTTTCCACTTTCGAATTCATCCTCATCAGATGTATAATTAGCATTCTGTATGTTATTGGGTTCCCAGTGCAAATTTTGATGGATTGCCTGGATCTCCATCTCAGACAAAGTCTCTAACCTTAGTTTCA]
[+] EMBL CD188314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACAAAGCGTCTTTAGCGCATCGAGTTCCACTTGTCTGATATTCTTCAACAATTATATCTTGGATTTGGAAACGCAAAATAATTGTCCAGATAAGTCCAAGTGTTAGTCGTGAATTTCCGTCTACGATATCGTGAGCACCCACATTTTCTAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCccaaga                                                                                                                                                                                                                                                                                ]
[-] EMBL CD192495             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGTCTGATATTCTTCAACAATTATATCTTGGATTTGGAAACGCAAAATAATTGTCCAGATAAGTCCAAGTGTTAGTCGTGAATTTCCGTCTACGATATCGTGAGCACCCACATTTTCTAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGA                                                                                                                                                                                                                                                         ]
[+] EMBL CD119574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGCACCCACATTTTCTAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGGGAGTTTACCCATTTTGTGAA                                                                                                                                                                                                           ]
[-] EMBL CD119424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCACCCACATTTTCTAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATATTTCCTCTTGTGGAACAAGAAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGGGAGTTTACCCATTTTGTGAATGTCTTTTTCTAGACGgag                                                                                                                                                                                        ]
[-] EMBL CD182226             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTCGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGGGAGTTTACCCATTTTGTGAATGTCTTTTTCTGAACGACCTCACGTTCATCTGCAAGTGCTTTAATACGCGATCGTTCGTACAGTTT                                                                                                                                         ]
[-] EMBL CD093604             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGGGAGTTTACCCATTTTGTGAATGTCTTTTCCTGAACGACCTCACGTTCATCTGCAAGTGCTTTAATACGCGATCGTTCGTACAGTTT                                                                                                                                         ]
[-] EMBL CD164406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGGGAGTTTACCCATTTTGTGAATGTCTTTTTCTGAACGACCTCACGTTCGTCTGCAAGCGCTTTAATACGCGATCGTTCGTACAGTTT                                                                                                                                         ]
[-] EMBL CD182202             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGGTGAACATGCTGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTTCCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATTTTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGGGAGTTTACCCATTTTGTGAATGTCTTTTTCTGAACGACCTCACGTTCATCTGCAAGTGCTTTAATACGCGATCGTTCGTACAGTTT                                                                                                                                         ]




>consensus_10962#0
TGATTCATTCTACCACCGAGAACACGAATGTCAGCTTCCAATAAATTATGCTTTTGCAAG
AGATCCTCAACACCCATTAAATGTTTACCATAATCCTGAGACTTAAGACGGCTCTTTATT
TCTTCGATCCAATCCATCAAATAGGTCATTTCTTGGAAGATATGTTGTAACTGTAAACTT
AGTTCTAGATGCTGGCGTCTAATGCTGAGTGAGTCCAGTAGATTACGCCACATGGCAAGT
ACTTTGTCCCTCCGTAACTGGATATTTTCATGAGCATGATAATTTTCTCTCTTCAGCTCC
TCTGCAACATTGACCATAGCATTTACACGCTCTTCATATGCATATATATCTGTCTCTATG
GCTTCATGCTTCTTTGTTGCAGCCTCAACAGCAGCAAGGTTATCACCAAAGAACTCTTGC
AAAACGAGCCGCTGATTATCTGTAAGCCAAGTTTCTCGCATTCCAGCTTTGCGATCGAAA
CGAGAGGCAAGTTGTTCCAACTTCTCCTGACGTATAAGTTCATCTCGTACAGCTAATTCG
CGTGCATGTTCAGCTCTTTCAAGCATTTCCCAGGCACGATTTATATCTGCTATCATTTTT
CCTTCAGGTGGATTATATTGTCTTTGATTGTTGGCACGCATTTTACTGCGAATAGTGAAG
AGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGGGGTTTTTCGACGGTTCGGTAA
GTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCG
TCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATAT
TGATTAATCATGTCATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAG
TGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATA
ATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGA
TTTAATTTTTCTTCGGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTA
GACAGTTTGGAGTATTCAATCAGATCAGGTCGGTGCTTATGAATTAAAGCATTGAAAGCC
AAACCATCACGCCAACTTGTCGTAAAGTTCCGAACATTTACATTGGGATAACCTGCAGTT
TTCATTTGGCACCACAATAACAAAGCGTCTTTAGCGCATCGAGTTTCACTTGTCTGATAT
TCTTCAACAATTATATCTTGGATTTGGAAACGCAAAATAATTGTCCAGATAAGTCCAAGT
GTTAGTCGTGAATTTCCGTCTACGATATCGTGAGCACCCACATTTTCTAGGTGAACATGC
TGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTT
CCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATT
TTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGG
GAGTTTACCCATTTTGTGAATGTCTTTTTCTGAACGACCTCACGTTCATCTGCAAGTGCT
TTAATACGCGATCGTTCGTACAGTTTTGCTGTACTGTTTCCACTTTCGAATTCATCCTCA
TCAGATGTATAATTAGCATTCTGTATGTTATTGGGTTCCCAGTGCAAATTTTGATGGATT
GCCTGGATCTCCATCTCAGACAAAGTCTCTAACCTTAGTTTCA

consensusID : consensus_10962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [TTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATGGAGGATGAAGATTTAATTTTTCTTCGGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTAGACAGTTTGGAGTATTCAATCAGATCAGGTCGGTGCTTATGAATTAAAGCATTGAAAGCCAAACCATCACGCCAACTTGTCGTAAAGTTCCGAACATTTACATTTGCACAACTGTCGTATTCGGGATCCTCTAA]

[-] EMBL CD061250             [TTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATGGAGGATGAAGATTTAATTTTTCTTCGGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTAGACAGTTTGGAGTATTCAATCAGATCAGGTCGGTGCTTATGAATTAAAGCATTGAAAGCCAAACCATCACGCCAACTTGTCGTAAAGTTCCGAACATTTACATTTGCACAACTGTCGTATTCGGGATCCTCTAA]




>consensus_10962#1
TTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATAATAGACTTTTCATC
TGGTTGTTCAACAGCCACGTCAGATGGTTCTAATGGAGGATGAAGATTTAATTTTTCTTC
GGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTAGACAGTTTGGAGTA
TTCAATCAGATCAGGTCGGTGCTTATGAATTAAAGCATTGAAAGCCAAACCATCACGCCA
ACTTGTCGTAAAGTTCCGAACATTTACATTTGCACAACTGTCGTATTCGGGATCCTCTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10962#0      TGATTCATTCTACCACCGAGAACACGAATGTCAGCTTCCAATAAATTATGCTTTTGCAAG 60
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      AGATCCTCAACACCCATTAAATGTTTACCATAATCCTGAGACTTAAGACGGCTCTTTATT 120
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TCTTCGATCCAATCCATCAAATAGGTCATTTCTTGGAAGATATGTTGTAACTGTAAACTT 180
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      AGTTCTAGATGCTGGCGTCTAATGCTGAGTGAGTCCAGTAGATTACGCCACATGGCAAGT 240
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      ACTTTGTCCCTCCGTAACTGGATATTTTCATGAGCATGATAATTTTCTCTCTTCAGCTCC 300
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TCTGCAACATTGACCATAGCATTTACACGCTCTTCATATGCATATATATCTGTCTCTATG 360
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      GCTTCATGCTTCTTTGTTGCAGCCTCAACAGCAGCAAGGTTATCACCAAAGAACTCTTGC 420
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      AAAACGAGCCGCTGATTATCTGTAAGCCAAGTTTCTCGCATTCCAGCTTTGCGATCGAAA 480
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      CGAGAGGCAAGTTGTTCCAACTTCTCCTGACGTATAAGTTCATCTCGTACAGCTAATTCG 540
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      CGTGCATGTTCAGCTCTTTCAAGCATTTCCCAGGCACGATTTATATCTGCTATCATTTTT 600
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      CCTTCAGGTGGATTATATTGTCTTTGATTGTTGGCACGCATTTTACTGCGAATAGTGAAG 660
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      AGTAAAACTTCAAGACCGCCTTTTTCTCTGAACTTGGGGGGTTTTTCGACGGTTCGGTAA 720
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      GTGTTGAAGCCAGCTAACTGGTGTTGAACACCCGAAAGTGAATTGGCGAATGTACGGTCG 780
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TCTAAAAGCTTTATAGTTTTCTTAATCCAGTCAAGAAGATCAGAAGTTAATTGTTCATAT 840
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TGATTAATCATGTCATCAGTTTCAATGGCCTGGTTGACAACCTTACCAATCCTTTTCGAG 900
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TGCACAGTATCAGCTTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATA 960
consensus_10962#1      --------------TTTCATTTTGTTAAAGTAGTGGTAATATGTAACAACATAGGTAATA 46
                                     **********************************************

consensus_10962#0      ATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATAGAGGATGAAGA 1020
consensus_10962#1      ATAGACTTTTCATCTGGTTGTTCAACAGCCACGTCAGATGGTTCTAATGGAGGATGAAGA 106
                       ************************************************ ***********

consensus_10962#0      TTTAATTTTTCTTCGGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTA 1080
consensus_10962#1      TTTAATTTTTCTTCGGCAACACTGAAGGCAGTAGTCAGGTTTTTAATTGGCTCTGATTTA 166
                       ************************************************************

consensus_10962#0      GACAGTTTGGAGTATTCAATCAGATCAGGTCGGTGCTTATGAATTAAAGCATTGAAAGCC 1140
consensus_10962#1      GACAGTTTGGAGTATTCAATCAGATCAGGTCGGTGCTTATGAATTAAAGCATTGAAAGCC 226
                       ************************************************************

consensus_10962#0      AAACCATCACGCCAACTTGTCGTAAAGTTCCGAACATTTACATTGGGATAACCTGCAGTT 1200
consensus_10962#1      AAACCATCACGCCAACTTGTCGTAAAGTTCCGAACATTTACATTTGCACAAC-TGTCGTA 285
                       ******************************************** * * *** **  ** 

consensus_10962#0      TTCATTTGGCACCACAATAACAAAGCGTCTTTAGCGCATCGAGTTTCACTTGTCTGATAT 1260
consensus_10962#1      TTCGG--GATCCTCTAA------------------------------------------- 300
                       ***    *   *   **                                           

consensus_10962#0      TCTTCAACAATTATATCTTGGATTTGGAAACGCAAAATAATTGTCCAGATAAGTCCAAGT 1320
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      GTTAGTCGTGAATTTCCGTCTACGATATCGTGAGCACCCACATTTTCTAGGTGAACATGC 1380
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TGATCACACAAGAAATTTAAGGACTTGTCAACATTCTCTAAACAATGAATTCGCATTTTT 1440
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      CCTCTTGTGGGTCGAGGAAGACGTTCACCAGATAAAATCTCTAGGAGTTTTAGAAGCATT 1500
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TTCCCGTCCCTTAGATCTAGGTATAGATCTTCGATGTTGCAAGACACAACCGAAAGGTGG 1560
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      GAGTTTACCCATTTTGTGAATGTCTTTTTCTGAACGACCTCACGTTCATCTGCAAGTGCT 1620
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TTAATACGCGATCGTTCGTACAGTTTTGCTGTACTGTTTCCACTTTCGAATTCATCCTCA 1680
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      TCAGATGTATAATTAGCATTCTGTATGTTATTGGGTTCCCAGTGCAAATTTTGATGGATT 1740
consensus_10962#1      ------------------------------------------------------------
                                                                                   

consensus_10962#0      GCCTGGATCTCCATCTCAGACAAAGTCTCTAACCTTAGTTTCA 1783
consensus_10962#1      -------------------------------------------