These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10967#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1174 fasta sequence [CTACTCCANACAGTTGACCGGCAGTTTTTAAATTTATTTGGAACCCTACGA-TAACCTGTGTCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT-TTT-AAAAAA-GGAGAC-A-TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCAGGAATTTTTGATACATTACGGCGTTGGTATAACGGGAATTAAATATCCGGATGTATGAACATGTTACTTTTTATTTGATTTCTAAAGTTCTAGTATATAATTTCCTTAAATTATCACAGTTCTTTATCTTTGTAAAGGTGAGTAGTTCAGTAACTTTTCTATTAAATCAACATGTGAAAGAAGCATGCGTCGGCAACAATAACGTCTCAAACCTAAAGTATCCAGAGCATCGCCTTCAGCATATTCAGCTTGAAGCAAACCAATGTAGCTTTCCCACTTGTCACCAACAACCTTTCCACACGTGAAACAACGTATTGGTATTATCATTGTTAAGTTTAAGAATGAAAGCAATCAACAAAAATTAAAAATATAAGCTTGGAATTGAGACACGAGCTCGTG] [+] EMBL CD166294 [CTACTCCANACAGTTGACCGGCAGTTTTTAAATTTATTTGGAACCCTACCA TAACCTGTGTCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGCAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAG ] [+] EMBL CD166293 [ AAACGTATTTGGAACCCTACGA TAACCTGTGTCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGCAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGTCTTT AAAAAAGGGAGACNACTTATCATTGATGGgg ] [+] EMBL CD082922 [ ACCCTACGA TAACCTGTGTCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGA ] [+] EMBL AI067892 [ CTACGA TAACCTGTGTCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCANAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGACACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGGAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGC ] [+] EMBL AI067100 [ CTACGA TAACCTGTGTCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGA ] [+] EMBL AI067679 [ CTACGA TAACCTGTGTCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCA ] [+] EMBL AI067955 [ TACGACTAAGCTGTGTCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTAGAATCTGTTTGATAAAAAACGAAAAGTGGATGATATTTTCGAACATTTCGATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGCGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCACTGAGACTTTGAGGCACATAGATCCACCTGGT TTT AAACAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAA ] [+] EMBL AI975514 [ AATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGACACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAATCCCAAGCTGAGGATAGTAAAGATTTA ] [+] EMBL AI975485 [ AATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGG ] [-] EMBL CD076506 [ TCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCAGGAATTTTTGATACATTACGGCGTTGGTATAACGGGAATTAAATATCCGGATGTATGAACATGTTACTTTTTATTTGATTTCTAAAGTTCTAGTATATAATTT ] [+] EMBL CD133359 [ CCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCA ] [+] EMBL CD121519 [ ATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAG ] [-] EMBL CD139399 [ ATATGATGGATGGAGAAATGTTCAATGAGACTTTGAGGCAAATAGATCCTCCTGGT TTTAAAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCTATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCATGAAAGAATACCA ] [-] EMBL AI975443 [ TGAGACTTTGAGGCAAATAGATCCTCCTGGT TTT AAAAAA GGAGAC A TTATCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCAGGAATTTTTGATACATTACGGCGTTGGTATAACGGGAATTAAATATCCGGATGTATGAACATGTTACTTTTTATTTGATTTCTAAAGTTCTAGTATATAATTT ] [-] EMBL AI976326 [ TCATTGATGGTCAACCAGCTAATGCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCAGGAATTTTTGATACATTACGGCGTTGGTATAACGGGAATTAAATATCCGGATGTATGAACATGTTACTTTTTATTTGATTTCTAAAGTTCTAGTATATAATTT ] [-] EMBL CD133651 [ GCCCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTCCTTTCACCAGCAAAACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGCCACTGAAGTTCATACCACGATCGAACGGTCATCTGACCGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCAT ] [-] EMBL AI975793 [ TCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCAGGAATTTTTGATACATTACGGCGTTGGTATAACGGGAATTAAATATCCGGATGTATGAACATGTTACTTTTTATTTGATTTCTAAAGTTCTAGTATATAATTT ] [+] EMBL CD181517 [ GATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCAGGAATTTTTGATACATTACGGCGTTGGTATAACGGGAATTAAATATCCGGATGTATGAACATGTTACTTTTTATTTGATTTCTAAAGTTCTAGTATATAATTTCCTTAAATTATCACAGTTCTTTATCTTTGTAAAGGTGAGTAGTTCAGTAACTTTTCTATTAAATCAACATGTGAAAGAAGCATGCGTCGGCAACAATAACGTCTCAAACCTAAAGTATCCAG ] [-] EMBL AW466245 [ TAAAGTTCTAGTATATAATTTCCTTAAATTATCACAGTTCTTTATCTTTGTAAAGGTGAGTAGTTCAGTAACTTTTCTATTAAATCAACATGTGAAAGAAGCATGCGTCGGCAACAATAACGTCTCAAACCTAAAGTATCCAGAGCATCGCCTTCAGCATATTCAGCTTGAAGCAAACCAATGTAGCTTTCCCACTTGTCACCAACAACCTTTCCACACGTGAAACAACGTATTGGTATTATCATTGTTAAGTTTAAGAATGAAAGCAATCAACAAAAATTAAAAATATAAGCTTGGAATTGAGACACGAGCTCGTG] consensusID : consensus_10967#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 866 fasta sequence [NAATTTTGCACGAGGTAACTTTAAATGTTATTCTAAAAACTCCATCTTCGACATTGTTTGGTGTAATAATTGTTCCATTTTCTAATTAAGACCTAGGAGACACACTAGTCACGTTTAGTTGTACTTATTATTTATTTATACCTGTTGCCCCCAATGGAATGTAGGCTGCCGACCATCATTCTCCAACCCACTCTGTCCCAGGTCTTCCTTTCTAGTTCTGTCTAAGTGTTTTTGATTTGACTTATTTTTTCTGGTCGGCGTTTTTCTAGCGAGTTATTTTTCTACGGGGTGGAGTCGCTAACTCCATGCCCAACCCTCCTTTATCCGGGCTTGGGACCGGCAGTAGCCCCAGGTGAAGTTTTAGTTGTACTTAGTTTTATAATTCAGTTCTTGAACGTAGAAATCTAACCGTTTATGCGGATATCCTTCTACCTCATCAGTTATGTGTAAAGTTTCGTCAGTGATTTTATTGTTTACTTTTGAAATTAGTAAGACCTTTGGCTGATGCAGTCAAAGTTATGTTAAAACTCATCTCAACATGTACTTTTTTGGAGATTATAGGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGAT-CCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCANGAATNNTTGATACATTACGGGCGTT-GTATTACGGNAATT-AATATNCNGATGTATGAACATG-TACTTTTATTTTGA-TTCT-AAG-TCTA-TATAT] [+] EMBL CD082057 [NAATTTTGCACGAGGTAACTTTAAATGTTATTCTAAAAACTCCATCTTCGACATTGTTTGGTGTAATAATTGTTCCATTTTCTAATTAAGACCTAGGAGACACACTAGTCACGTTTAGTTGTACTTATTATTTATTTATACCTGTTGCCCCCAATGGAATGTAGGCTGCCGACCATCATTCTCCAACCCACTCTGTCCCAGGTCTTCCTTTCTAGTTCTGTCTAAGTGTTTTTGATTTGACTTATTTTTTCTGGTCGGCGTTTTTCTAGCGAGTTATTTTTCTACGGGGTGGAGTCGCTAACTCCATGCCCAACCCTCCTTTATCCGGGCTTGGGACCGGCAGTAGCCCCAGGTGAAGTTTTAGTTGTACTTAGTTTTATAATTCAGTTCTTGAACGTAGAAATCTAACCGTTTATGCGGATATCCTTCTACCTCATCAGTTATGTGTAAAGTTTCGTCAGTGATTTTATTGTTTACTTTTGAAATTAGTAAGACCTTTGGCTGATGCAGTCAAAGTTATGTTAAAACTCATCTCAACATGTACTTTTTTGGAGATTATAGGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCCCAGCGTT CATTCATGANAGAATACCAGTCAGAAAACAAGTCTTCANGAATNNTTGATACATTACGGGCGTT GTATTACGGNAATT AATATNCNGATGTATGAACATG TACTTTTATTTTGA TTCT AAG TCTA TAT ] [+] EMBL CD187573 [ TTGTTCCATTTTCTAATTAAGACCTAGGAGACACACTAGTCACGTTTAGTTGTACTTATTATTTATTTATACCTGTTGCCCCCAATGGAATGTAGGCTGCCGACCATCATTCTCCAACCCACTCTGTCCCAGGTCTTCCTTTCTAGTTCTGTCTAAGTGTTTTTGATTTGACTTATTTTTTCTGGTCGGCGTTTTTCTAGCGAGTTATTTTTCTACGGGGTGGAGTCGCTAACTCCATGCCCAACCCTCCTTTATCCGGGCTTGGGACCGGCAGTAGCCCCAGGTGAAGTTTTAGTTGTACTTAGTTTTATAATTCAGTTCTTGAACGTAGAAATCTAACCGTTTATGCGGATATCCTTCTACCTCATCAGTTATGTGT ] [-] EMBL CD075672 [ GTTATTTTTCTACGGGGTGGAGTCGCTAACTCCATGCCCAACCCTCCTTTATCCGGGCTTGGGACCGGCAGTAGCCCCAGGTGAAGTTTTAGTTGTACTTAGTTTTATAATTCAGTTCTTGAACGTAGAAATCTAACCGTTTATGCGGATATCCTTCTACCTCATCAGTTATGTGTAAAGTTTCGTCAGTGATTTTATTGTTTACTTTTGAAATTAGTAAGACCTTTGGCTGATGCAGTCAAAGTTATGTTAAAACTCATCTCAACATGTACTTTTTTGGAGATTATAGGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGAT CCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCAGGAATTTTTGATACATTAC GGCGTTGGTATAACGGGAATTAAATATCCGGATGTATGAACATGTTACTTTTTATTTGATTTCTAAAGTTCTAGTATAT] [-] EMBL AW017232 [ AGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGAT CCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGT ] consensusID : consensus_10967#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 544 fasta sequence [CGCAGTACGGTAATGCAGCTGCATGGCATTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAAACAAACAACTTTTTTATATTAGAAAATATTGAGAAAAAGAAAAGAATTTAAAGATATGATAATTAGCACAACACAATA--TTTTTTTTGGGGGGGGGGTTCATTTAAAAAAAAGGAAAC-ATCTAACCTAAAATCGATTATTTAATTATCCTAACAACACACTTGTTATTATTGATTGGGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACT] [+] EMBL AI975888 [CGCAGTACGGTAATGCAGCTGCATGGCATTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAAACAAACAACTTTTTTATATTAGAAAATATTGAGAAAAAGAAAAGAATTTAAAGATATGATAATTAGCACAACACAATA TTTTTTTTGGGGGGGGGGTTCATTTAAAAAAAAGGAAAC ATCTAACCTAAAATCGATTATTTAATTATCCTAACAACACACTTGTTATTATTGATTGGGGTCACTCGCTTTCATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACT] [+] EMBL SMW785 [ AAAACAAACAACTTTTTTATATTAGAAAATATTGAGAAAAAGAAAAGAATTTAAAGATATGATAATTAGCACAACACAATATTTTTTTTTTGGGGGGGGGGTTCATTTAGAAAAAAGGAAACGATCTAACCTAAA ] consensusID : consensus_10967#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [TAACGGGGANTTAAATATCCGGATGTATGACCATGTTACCTTTTATTTGATTTCTAAAGTTCTAGTATATAATTTCCTTAAATTATCACAGTTCTTTATCTTTGTAAAGGTGAGTAGTTCAGTAACTTTTCTATTAAATCAACATGTGAAAGAAGCATGCGTCGGCAACAATAACGTCTCAAACCTAAAGTATCCAGAGCATCGCCTTCAGCATATTCAGCTTGAAGCAAACCAATGTAGCTTTCCCACTTGTCACCAACAACCTTTCCACACGTGAAACAACGTATTGGTATTATCATTTGTTTAACTATATTTGAAAATAAAATGTG] [-] EMBL SMAA25704 [TAACGGGGANTTAAATATCCGGATGTATGACCATGTTACCTTTTATTTGATTTCTAAAGTTCTAGTATATAATTTCCTTAAATTATCACAGTTCTTTATCTTTGTAAAGGTGAGTAGTTCAGTAACTTTTCTATTAAATCAACATGTGAAAGAAGCATGCGTCGGCAACAATAACGTCTCAAACCTAAAGTATCCAGAGCATCGCCTTCAGCATATTCAGCTTGAAGCAAACCAATGTAGCTTTCCCACTTGTCACCAACAACCTTTCCACACGTGAAACAACGTATTGGTATTATCATTTGTTTAACTATATTTGAAAATAAAATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10967#0 CTACTCCANACAGTTGACCGGCAGTTTTTAAATTTATTTGGAACCCTACGATAACCTGTG 60 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 TCGATTATCTAATTATCCTAACAACACACTTGTTATTATTGATTGTGGTCACTCGCTTTC 120 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 ATTCCTAGATGTAAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAA 180 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 AAAACGAAAAATGGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTT 240 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 TTCAGGGTTCTTTACTCCAAAGTTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCG 300 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 ACCGGAGAATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCA 360 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 TGGCGACTTGGTCAAACCAGATATGATGGATAGAGAAATGTTCAATGAGACTTTGAGGCA 420 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 AATAGATCCTCCTGGTTTTAAAAAAGGAGACATTATCATTGATGGTCAACCAGCTAATGC 480 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 CCCGTATGCTGAGAAGCGTGACTCATCAGTACGTAGATGGGTCAGTTCTTTCACCAGCAA 540 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 AACGCTCATAGTGAATAACAGTGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACC 600 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 ------------------------------------------------------------ consensus_10967#0 AGATGGCACTGAAGTTCATACCACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGT 660 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 -----------------------------------NAATTTTGCACGAGGTAACTTTAAA 25 consensus_10967#0 TGTCTATATGAGACCCGATGATCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAAT 720 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 TGTTATTCTAAAAACTCCATCTTCGACATTGTTTGGTGTAATAATTGTTCCATTTTCTAA 85 consensus_10967#0 TATGGATCCAAGCGTTCCATCCATGAAAGAATACCAGTCAGAAAACAAGTCTTCAGGAAT 780 consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 TTAAGACCTAGGAGACACACTAGTCACGTTTAGTTGTACTTATTATTTATTTATACCTGT 145 consensus_10967#0 TTTTGATACATTACGGCGTTGGTATAACGGG-AATTAAATATCCGGATGTATGAACATGT 839 consensus_10967#3 ------------------------TAACGGGGANTTAAATATCCGGATGTATGACCATGT 36 consensus_10967#2 ----------------------------CGCAGTACGGTAATGCAGCTGCATGG-CATTT 31 consensus_10967#1 TGCCCCCAATGGAATGTAGGCTGCCGACCATCATTCTCCAACCCACTCTGTCCCAGGTCT 205 * * * * consensus_10967#0 TACTTTTTATTTGATTTCTAAAGTTCT---AGTATATAATTTCCTTAAATTATCACA-GT 895 consensus_10967#3 TACCTTTTATTTGATTTCTAAAGTTCT---AGTATATAATTTCCTTAAATTATCACA-GT 92 consensus_10967#2 TTTTTTTTTTTTTTTTTTTTTTTTCCTGAAAACAAACAACTTTTTTATATTAGAAAATAT 91 consensus_10967#1 TCCTTTCTAGTTCTGTCTAAGTGTTTTTGATTTGACTTATTTTTTCTGGTCGGCGTT-TT 264 * ** * ** * * * * ** * * * consensus_10967#0 TCTTTATCTTTGTAAAGGTGAGTAGTTCAGTAACTTTTCTATTAAATCAACATGT--GAA 953 consensus_10967#3 TCTTTATCTTTGTAAAGGTGAGTAGTTCAGTAACTTTTCTATTAAATCAACATGT--GAA 150 consensus_10967#2 TGAGAAAAAGAAAAGAATTTAAAGATATGATAATTAGCACAACACAATATTTTTTTTGGG 151 consensus_10967#1 TCTAGCGAGTTATTTTTCTACGGGGTGGAGTCGCTAACTCCATGCCCAACCCTCCTTTAT 324 * * * * * * * consensus_10967#0 AGAAGCATGCGTC-GGCAACAATAACGTCTCAAACCTAAAGTATCCAGAGCATCGCCTTC 1012 consensus_10967#3 AGAAGCATGCGTC-GGCAACAATAACGTCTCAAACCTAAAGTATCCAGAGCATCGCCTTC 209 consensus_10967#2 GGGGGGGTTCATTTAAAAAAAAGGAAACATCTAACCTAAA--ATCGATTATTTAATTATC 209 consensus_10967#1 CCGGGCTTGGGACCGGCAGTAGCCCCAGGTGAAGTTTTAGTTGTACTTAGTTTTATAATT 384 * * * * * * * * * * * consensus_10967#0 AGCATATTCAGCTTGAAG--CAAACCAAT---GTAGCT-TTCCCACTTGTCACCAACAAC 1066 consensus_10967#3 AGCATATTCAGCTTGAAG--CAAACCAAT---GTAGCT-TTCCCACTTGTCACCAACAAC 263 consensus_10967#2 CTAACAACACACTTGTTA--TTATTGATT---GGGGTCACTCGCTTTCATTCCTAGATGT 264 consensus_10967#1 CAGTTCTTGAACGTAGAAATCTAACCGTTTATGCGGATATCCTTCTACCTCATCAGTTAT 444 * * * * * * * * * consensus_10967#0 CTTTCCACACGTGA-AACAACGTATTGGTATTATCATTGTTAAGTTTAAGAATGAAAGCA 1125 consensus_10967#3 CTTTCCACACGTGA-AACAACGTATTGGTATTATCATTTGTTTAACTATATTTGAAAATA 322 consensus_10967#2 AAGTGCACTCTCTATGGTTACTGAGTCGACTTATAATCTGTTTGATAAAAAACGAAAAAT 324 consensus_10967#1 GTGTAAAGTTTCGTCAGTGATTTTATTGTTTACTTTTGAAATTAGTAAGACCTTTGGCT- 503 * * * * * * * * * consensus_10967#0 ATCAACAAAAATTAAAAATATAAGCTTGGAATTGAGACACGAGCTCGTG----------- 1174 consensus_10967#3 AAATGTG----------------------------------------------------- 329 consensus_10967#2 GGATGAGATTTTCGAACATTTCCATAAAGTGTTTGAAGATATGACCTTTTCAGGGTTCTT 384 consensus_10967#1 -GATGCAGTCA--AAGTTATGTTAAAACTCATCTCAACATGTACTTTTTTGGAGATTATA 560 consensus_10967#0 ------------------------------------------------------------ consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 TACTCCAAAG----TTCAGAAATCAGTCACCACGTGATGAAATGCTACGCCGACCGGAGA 440 consensus_10967#1 GGAAGTGAAAGAGTTACAGAAAAGAGTGGTTCGTGAACCAGATGGCACTGAAGTTCATAC 620 consensus_10967#0 ------------------------------------------------------------ consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ATGAATCAAATTATTCTCAAGTGCCGGAGCCGTGGATGCCTTTTCCATTTCATGGCGACT 500 consensus_10967#1 CACGATCGAACGGTCATCTGATGGGGAAAAGAAACATGTTGTCTATATGAGACCCGATGA 680 consensus_10967#0 ------------------------------------------------------------ consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 TGGTCAAACCAGATATGATGG--ATAGAGAAATGTTCAATGAGACT-------------- 544 consensus_10967#1 TCAGCAGTCCCAAGCTGAGGATAGTAAAGATTTACTAATTATGGATCCAAGCGTTCCATC 740 consensus_10967#0 ------------------------------------------------------------ consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 CATGAAAGAATACCAGTCAGAAAACAAGTCTTCANGAATNNTTGATACATTACGGGCGTT 800 consensus_10967#0 ------------------------------------------------------------ consensus_10967#3 ------------------------------------------------------------ consensus_10967#2 ------------------------------------------------------------ consensus_10967#1 GTATTACGGNAATTAATATNCNGATGTATGAACATGTACTTTTATTTTGATTCTAAGTCT 860 consensus_10967#0 ------ consensus_10967#3 ------ consensus_10967#2 ------ consensus_10967#1 ATATAT 866 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||