These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 784 fasta sequence [AAACCGATCTAGT-TTATTTAAGTGAAATTATTAAATCACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC-TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC-TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC-GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTTAACAAATCCCTCGTGCCGAA] [+] EMBL CD074574 [AAACCGATCTAGT TTATTTAAGTGAAATTATTAAATCACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCT CTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAA ] [-] EMBL CD080656 [ AACCGATCTAGTNTTATTTAAGTGAAATTATTAAATTACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCT CTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAAT ] [-] EMBL AW146506 [ cCCGAT TGAT TTTTTTAGGTGAAATTTTTAATTC CTTAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCCTTCAAAGTAGTCG TGTCAATCCAATAATACTCGTTCTTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATG ] [+] EMBL BG932224 [ GCGGCGCACATTCACTTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACG ] [-] EMBL CD124114 [ TTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAATGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCA ] [-] EMBL CD124165 [ TTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCA ] [-] EMBL CD124101 [ TTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGTCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAGCGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCATCAGCAGATTCAGAATCACTATCAGCCCAGCCGTACTTGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCATGAGATGGAAGTAGACCGAGACATATCTGCCTTCATTTTACTCTCTCGTCTTGAAGGAGTTGCGGAGAGAGAATTACTGGTATGATTCGTCCGAGTTTTCTGTGTATCTGAGTCAGCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACAATCATGTACAGATCA ] [-] EMBL CD065159 [ CGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTTAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAA ] [+] EMBL CD122513 [ GAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCG ] [+] EMBL CD189694 [ CAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTT ] [-] EMBL CD133045 [ AACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTT ] [-] EMBL CD153002 [ CCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATCTCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTACTTTCTGTGCAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTT ] [-] EMBL CD153449 [ cnCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTT ] [+] EMBL CD158292 [ ATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCA TTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAna ] [-] EMBL CD083739 [ AGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTCATGCAACAAATCCCTCGTGCCGAA] [-] EMBL CD122449 [ GAGACAGATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGCTTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTTTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTT ] [-] EMBL CD194417 [ GAGTCGCGGAGAGAGAACTACTGGACTGATTCGTCCGAGTAGTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTc ] [+] EMBL CD090258 [ TAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTT ] consensusID : consensus_10971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 693 fasta sequence [TGTTTTCGTAGTGGATGTGGATATAGAACACGTGATAATGGAAGGTATGATAACTGTTCAGGAGTATAGCTCATAAAATATTCTGCAAACTGTCCAGGTATGACTGCCACAGGATATGCACCATTGGGAAATGTTGGATATTCTAATAACTTATAAATTCTCTGAGGAATGTGAATTTGCATTGTCTGTAAATCCCAATAACAACGTCTTGAACTCATACGTTCGGTAATCAAGCGATGATTGTAATCAGCAGCAGAATCTAACGCTGGTATGCGAGCTGCTTCAGCTCGAGCCTCTCCACGTTCAATACGAGCAGCTTCATACTGACGCTTTTGATTTTCGACAGCCGTTTTAAATTTTCGTCGACGAAACAAATCCGTCAAAGCAATGTGTATCTCTGGATAATCCTGTTGCAAAAGCTTCATAACATCATCAATTTTGAGTGCTGTGAGACCAAGGTCTGCACGACCAACAGGAACAATCCCCTCTTGTTGCAACCAAGATCGTTCATAAGCATCCATAGCGCGCCTAGCAAGATCAGGGTACTTGCGTTTAAAAGATTTGACCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTA] [-] EMBL CD197906 [TGTTTTCGTAGTGGATGTGGATATAGAACACGTGATAATGGAAGGTATGATAACTGTTCAGGAGTATAGCTCATAAAATATTCTGCAAACTGTCCAGGTATGACTGCCACAGGATATGCACCATTGGGAAATGTTGGATATTCTAATAACTTATAAATTCTCTGAGGAATGTGAATTTGCATTGTCTGTAAATCCCAATAACAACGTCTTGAACTCATACGTTCGGTAATCAAGCGATGATTGTAATCAGCAGCAGAATCTAACGCTGGTATGCGAGCTGCTT ] [-] EMBL CD161822 [ TTGCATGGGCTGTAATTCCCAATAACAACGTCTTGAACTCATACGTTCGGTAGTCAAGCGATGATTGTAATCAGCAGCAGAATCTAACGCTCGTCTGCGAGCTGCTTCAGCTCGAGCCTCTCCACGTTCAATACGAGCAGCTTCATACTGACGCTTTTGATTTTCGACAGCCGTTTTAAATTTTCGTCGACGAAACAAATCCGTCAAAGCAATGTGTATCTCTGGATAATCCTGTTGCAAAAGCTTCATAACATCATCAATTTTGAGTGCTGTGAGACCAAGGTCTGCACGACCAACAGGAACAATCCCCTCTTGTTGCAACCAAGATCGTTCATAAGCATCCATAGCGCGCCTAGCAAGATCAGGGTACTTGCGTTTAAAAGATTTGACCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTA] [-] EMBL CD067297 [ ACCAAGATCGTTCATAAGCATCCATAGCGCGCCTAGCAAGATCAGGGTACTTGCGTTTAAAAGATTTGACCTTTAAAAAGTCAGCAAGTACTTCTTGAAATATGTATGACTCCTT ] consensusID : consensus_10971#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 585 fasta sequence [GATCTAGTTTATTTAAGTGAAATTATTAAATTACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCCTCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCATTTACTTGAAGATTAGATTCTTTATAACTCATTAACTTTTTCTCCCAACATTTCGAACATCCTGTACAAATTGGAGTATAAGGGAAGAGAGCTAATTTCACACG] [+] EMBL CD074141 [GATCTAGTTTATTTAAGTGAAATTATTAAATTACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCCTCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCATTTACTTGAAGATTAGATTCTTTATAACTCATTAACTTTTTCTCCCAACATTTCGAACATCCTGTACAAATTGGAGTATA ] [+] EMBL CD150619 [ AGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACCACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCA ] [+] EMBL CD150615 [ AGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCA ] [-] EMBL CD150516 [ ATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCATTTACTTGAAGATTAGATTCTTTATAACTCATTAACTTTTTCTCCCAACATTTCGAACATCCTGTACAAATTGGAGAATAAGGGAAGAG ] [-] EMBL CD150686 [ GTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCATTTACTTGAAGATTAGATTCTTTATAACTCATTAACTTTTTCTCCCAACATTTCGAACATCCTGTACAAATTGGAGTATAAGTAAGGCGAGCTAATTTCACACG] consensusID : consensus_10971#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [TGCAGGGGAAATCAGATATGCACCATGGGGAGAAGTTGGATATTCTAATAACTTATAAATTCTCTGAGGAATGTGAATTTGCATTGTCTGTAAATCCCAATAACAACGTCTTGAACTCATACGTTCGGTAATCAAGCGATGATTGTAATCAGCAGCAAAATCT] [+] EMBL CD067405 [TGCAGGGGAAATCAGATATGCACCATGGGGAGAAGTTGGATATTCTAATAACTTATAAATTCTCTGAGGAATGTGAATTTGCATTGTCTGTAAATCCCAATAACAACGTCTTGAACTCATACGTTCGGTAATCAAGCGATGATTGTAATCAGCAGCAAAATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10971#1 TGTTTTCGTAGTGGATGTGGATATAGAACACGTGATAATGGAAGGTATGATAACTGTTCA 60 consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 --------------------------AAACCGATCTAGTTTATTTAAGTGAAATTATTAA 34 consensus_10971#2 -------------------------------GATCTAGTTTATTTAAGTGAAATTATTAA 29 consensus_10971#1 GGAGTATAGCTCATAAAATATTCTGCAAACTGTCCAGGTATGACTGCCACAGGATATGCA 120 consensus_10971#3 --------------------------------------TGCAGGGGAAATCAGATATGCA 22 consensus_10971#0 ATCACATA----AAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC 90 consensus_10971#2 ATTACATA----AAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC 85 * * * ** consensus_10971#1 CCATTGGGAAATGTTGGATATTC--TAATAAC--TTATAAATTCTCTGAGGAATGTGAAT 176 consensus_10971#3 CCATGGGGAGAAGTTGGATATTC--TAATAAC--TTATAAATTCTCTGAGGAATGTGAAT 78 consensus_10971#0 TCA-AAGTAGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAA-ACAAAC 148 consensus_10971#2 TCA-AAGTAGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAA-ACAAAC 143 ** * * **** ** * ***** ** * * ** ***** ** consensus_10971#1 TTGCATTGTCTGTAAATCCCAAT-AACAAC--GTCTTGAACTCATACGTTCGGTAATCAA 233 consensus_10971#3 TTGCATTGTCTGTAAATCCCAAT-AACAAC--GTCTTGAACTCATACGTTCGGTAATCAA 135 consensus_10971#0 GCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGA 208 consensus_10971#2 GCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGA 203 ** ** *** * * ** ** * ** ** ***** * * ** * consensus_10971#1 GCGATGATTGTAATCAGCAGCAGAATCTAACGCTGGTATGCGAGCTGCTTCAGCTCGAGC 293 consensus_10971#3 GCGATGATTGTAATCAGCAGCAAAATCT-------------------------------- 163 consensus_10971#0 GCCATGAACGAAACT-GTTGTATA-TATGGTCCCAATA-GCTGGTGGAATGACGCAAAAT 265 consensus_10971#2 GCCATGAACGAAACT-GTTGTATA-T--GGTCCCAATA-GCTGGTGGAATGACGCAAAAT 258 ** **** * ** * * * * * consensus_10971#1 CTCTCCACGTTCAATACGAGCAGCTTCATACTGACGCTTTTGATTTTCGACAGCCGTTTT 353 consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 ATCCAAACG---AATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTT---CTTGAACT 319 consensus_10971#2 ATCCAAACG---AATGTGATCTCCTTCT--GGAGTGATTGTGAATCCTGAAGCCTTTTCA 313 consensus_10971#1 AAATTTTCGTCGACGAAACAAATCCGTCAAAGCAATGTGTATCTCTGGATAATCCTGTTG 413 consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 ATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCG 379 consensus_10971#2 ACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATT 373 consensus_10971#1 CAAAAGCTTCATAACATCATCAATTTTGAGTGCTGTGAGACCAAGGTCTGCACGACCAAC 473 consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 T----ACTCGTAAATGTCCTCCAAGTTAA---CATTATCAGTAAGTCCTGAGATGGAAGT 432 consensus_10971#2 T----GTTGTTGAATTTCTTCACTTTCCA---TTCCATCAATA---TTTGATTTGTTATT 423 consensus_10971#1 AGGAACAATCCCCTCTTGTTGCAACCAAGATCGTTCATAAGCATCCATAGCGCGCCTAGC 533 consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 AGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGA 492 consensus_10971#2 ATTAC------TGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGA------ 471 consensus_10971#1 AAGATCAGGGTACTTGCGTTTAAAAGATTTGACCTTTAAAAAGTCAGCAAGTACTTCTTG 593 consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 ATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTCGCCATCATCATTCTTTAG 552 consensus_10971#2 -TTTCTTTGC--ATTTACTTGAAGATTAGATTCTTTATAACT--CATTAACTTTTTCTCC 526 consensus_10971#1 AACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCA 653 consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 GGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCAT-CGT 611 consensus_10971#2 CAACATTTCGAACATCCTGTACAAATTGGAGTATAAGGGAAGAGAGCTAATTTCACACG- 585 consensus_10971#1 GTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTA-------------------- 693 consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 CAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATT 671 consensus_10971#2 ------------------------------------------------------------ consensus_10971#1 ------------------------------------------------------------ consensus_10971#3 ------------------------------------------------------------ consensus_10971#0 TTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCT 731 consensus_10971#2 ------------------------------------------------------------ consensus_10971#1 ----------------------------------------------------- consensus_10971#3 ----------------------------------------------------- consensus_10971#0 CGATTGGTACAACTACCCGGAACACTTTAATTTAACAAATCCCTCGTGCCGAA 784 consensus_10971#2 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||