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Schistosoma mansoni
cluster # 10976 cluster # 10976       Sequences # 27       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10976#0 length = 360 sequences # 5  
consensus_10976#1 length = 333 sequences # 22  

consensusID : consensus_10976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 360
fasta sequence
                              [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]

[+] EMBL CD093044             [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD093074             [TTCTTCGTCCGATCATTTTCCCCATGAAAAACCAGCAGAGCACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD093057             [TTCTTCGTCCGATCATTTTCCCCATGAAAAACCAGCAGAGCACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD093039             [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG]
[+] EMBL CD138311             [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGCATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                                    ]


>consensus_10976#0 TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAG CATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAAC ATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGG CTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGT CAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGA AAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG



consensusID : consensus_10976#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 22
consensus length = 333
fasta sequence
                              [CCGACT-GA-CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGCTAAATTAATCACTCTGGTTAATCTATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG]

[+] EMBL CD196051             [CCGACT GA CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGAGGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCT                                                                                                                                                                     ]
[+] EMBL CD138358             [ CGACTATATCCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGATTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[-] EMBL CD181832             [ CGACT GA CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT                                                                                                                      ]
[+] EMBL CD138334             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCC TGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGCTAAATTAATCACTCTGGTTAATCTATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG]
[+] EMBL CD138327             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGAGGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCT                                                                                                                                                                     ]
[+] EMBL CD138293             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCATCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138341             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138274             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138278             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138330             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138359             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138393             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138407             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138286             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAGATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138352             [                    TTCTTCGTCCGATCATTT CCCCATGAAAAACCAGCAGAGTACTCCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGAGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138290             [                    TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCC AGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGTTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138269             [                    TTCTTCGTCCGATCATTT CCCCATGAAAAACCAGCAGAGTACTCCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC                                                                                                                       ]
[+] EMBL CD138370             [                    TTCTTCGCCCGATCATTTCCCCCATGAAAAACCAGCAGAGAACTTCTACTGACACAACAGAATTAACAAGCCCTTCCTTGACGGAAACATTTTTCC AGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGGTCCATTGCTGGATTGAGATCTGCTTG                                                                                                                                                        ]
[-] EMBL CD138362             [                     TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT                                                                                                                      ]
[-] EMBL CD181875             [                     TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTTCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT                                                                                                                      ]
[-] EMBL CD138367             [                     TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCAC                                                                                                                                                                                                                  ]
[+] EMBL CD194860             [                                                                      GTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGC                                                           ]


>consensus_10976#1 CCGACTGACCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTA CTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCAC CACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTT GTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAG TTTCCTGTATAACGAAGGAAGAAACCTTCGAAGCTAAATTAATCACTCTGGTTAATCTAT CCGCCATTTTATGGGCCGCCAAAACGTCAGTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10976#0      ------------------TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTA 42
consensus_10976#1      CCGACTGACCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTA 60
                                         ******************************************

consensus_10976#0      CTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAAT 102
consensus_10976#1      CTTCTACTGTCACAACAGCATTAACAAGCCCTTCCT------------------------ 96
                       ************************************                        

consensus_10976#0      ATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGT 162
consensus_10976#1      --------TGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGT 148
                               ****************************************************

consensus_10976#0      TGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGC 222
consensus_10976#1      TGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGC 208
                       ************************************************************

consensus_10976#0      ATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTC 282
consensus_10976#1      ATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCT- 267
                       *********************************************************** 

consensus_10976#0      TACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATC 342
consensus_10976#1      ------------------------------TCGAAGCTAAATTAATCACTCTGGTTAATC 297
                                                     ********************** *******

consensus_10976#0      TATCCGCCATTTTATGGG------------------ 360
consensus_10976#1      TATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG 333
                       ******************                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)