These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 360 fasta sequence [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG] [+] EMBL CD093044 [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG] [+] EMBL CD093074 [TTCTTCGTCCGATCATTTTCCCCATGAAAAACCAGCAGAGCACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG] [+] EMBL CD093057 [TTCTTCGTCCGATCATTTTCCCCATGAAAAACCAGCAGAGCACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG] [+] EMBL CD093039 [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTCTACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATCTATCCGCCATTTTATGGG] [+] EMBL CD138311 [TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGCATCAATATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] consensusID : consensus_10976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 333 fasta sequence [CCGACT-GA-CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGCTAAATTAATCACTCTGGTTAATCTATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG] [+] EMBL CD196051 [CCGACT GA CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGAGGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCT ] [+] EMBL CD138358 [ CGACTATATCCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGATTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [-] EMBL CD181832 [ CGACT GA CCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT ] [+] EMBL CD138334 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCC TGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGCTAAATTAATCACTCTGGTTAATCTATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG] [+] EMBL CD138327 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGAGGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCT ] [+] EMBL CD138293 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCATCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138341 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138274 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138278 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138330 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138359 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138393 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138407 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138286 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAGATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138352 [ TTCTTCGTCCGATCATTT CCCCATGAAAAACCAGCAGAGTACTCCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGAGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138290 [ TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCC AGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGTTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138269 [ TTCTTCGTCCGATCATTT CCCCATGAAAAACCAGCAGAGTACTCCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTC ] [+] EMBL CD138370 [ TTCTTCGCCCGATCATTTCCCCCATGAAAAACCAGCAGAGAACTTCTACTGACACAACAGAATTAACAAGCCCTTCCTTGACGGAAACATTTTTCC AGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGGTCCATTGCTGGATTGAGATCTGCTTG ] [-] EMBL CD138362 [ TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT ] [-] EMBL CD181875 [ TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTTCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCT ] [-] EMBL CD138367 [ TCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTACTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCAC ] [+] EMBL CD194860 [ GTCACAACAGCATTAACAAGCCCTTCCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGTTGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGCATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTTCGAAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10976#0 ------------------TTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTA 42 consensus_10976#1 CCGACTGACCTAGAAAGCTTCTTCGTCCGATCATTTCCCCCATGAAAAACCAGCAGAGTA 60 ****************************************** consensus_10976#0 CTTCTACTGTCACAACAGCATTAACAAGCCCTTCCTAAAAATAAGTAAGAGTGTATCAAT 102 consensus_10976#1 CTTCTACTGTCACAACAGCATTAACAAGCCCTTCCT------------------------ 96 ************************************ consensus_10976#0 ATATACCTTGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGT 162 consensus_10976#1 --------TGACGGAAACATTTTTCCAAGCACCACTTTTGAATGAGCAAATCAGCTTTGT 148 **************************************************** consensus_10976#0 TGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGC 222 consensus_10976#1 TGCTTGTTCCATTGCTGGCTTGAGATCTGCTTGTGTTGGTGGCCTTAGTTCCACCCTTGC 208 ************************************************************ consensus_10976#0 ATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCTC 282 consensus_10976#1 ATATTCTCGGAACTTAGTCAGTCTTGGTGAAGTTTCCTGTATAACGAAGGAAGAAACCT- 267 *********************************************************** consensus_10976#0 TACAGGGCTCAAAAAAGAAAGAAAACATACTCGAAGCTAAATTAATCACTCTAGTTAATC 342 consensus_10976#1 ------------------------------TCGAAGCTAAATTAATCACTCTGGTTAATC 297 ********************** ******* consensus_10976#0 TATCCGCCATTTTATGGG------------------ 360 consensus_10976#1 TATCCGCCATTTTATGGGCCGCCAAAACGTCAGTCG 333 ****************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||