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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1005 fasta sequence
[GCGGCCAAAAATTCGGCACGAGGTCTCAGCATTGATTGAGTCCCGTCTGACGTTCTGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA-TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT-CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC--TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGGGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGG]
[+] EMBL CD077500 [GCGGCCAAAAATTCGGCACGAGGTCTCAGCATTGATTGAGTCCCGTCTGACGTTCTGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGC AAGATCATCTTCATA ]
[+] EMBL AI976351 [ GTCTGACGTTCTGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCANAACTGGAGAAGCAGANACCATCACTTCTCACTATC ]
[+] EMBL AI068071 [ ACGTTCTGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAG ]
[+] EMBL AI067862 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAG ]
[+] EMBL AI067280 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTG ]
[+] EMBL AI067039 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATTATA TTTAGATTCAAAGCTACATATGATGG ]
[+] EMBL AI068305 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGA CTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCA ]
[+] EMBL AI067354 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCATGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATATGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCCTTA TAGCA ]
[+] EMBL AI067057 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT ]
[-] EMBL CD067269 [ TATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGAGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTT ]
[+] EMBL CD115722 [ GTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATTCGTGATAAACAAAATACAGCTGATCGTTTTTTCTATGCGCTCTCGTTATTCTACCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGGGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGG]
[+] EMBL CD153931 [ GTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTNTTCTTATGCGCTCTCGTTATTCTAGCATG ]
[+] EMBL CD153762 [ GTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGCTGTGTTGCAAACTTTGCTATATTGCGAC TTTTCTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCTGATTCCTTTNTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCC ]
[+] EMBL CD191882 [ GTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTA ]
[-] EMBL CD076258 [ CTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTC ]
[+] EMBL CD199350 [ TGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAGCTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAG AGGGTANAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATGATGCGACCCGngctg ]
consensusID : consensus_10981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 848 fasta sequence
[CCCTCG-AGCCAANAATTCGGCACGAGGCGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAACGATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACAAGCCTTCCTGAAACCGTGTGTCCCGTCCAAACTAACCTGTTTAGTTAGGTTATGATAGTACCATGTTATGAAAGTTGTGCAGGATTAATGTCTGTCGGTTCTTTACGACTCCCTGGATGAGGTCATAGAGTACAACATAATTGGCTTGATATGTCACCAGATACGACTCATAACTGTAATTTCTTTTACTTTCTTCATATAAGTGAAAAGAACTTTTTGAACTGAGAGAATTTTTTTGGATGTATTTTTTCTTAACAGAACTGCCCTT-NCCACAATTCTTTGCTCTATTTACTTATTGGTTTTTTTTCTTTAATATACTCATCTNCCTTCGTTATATCTTTAC-ACCTGACTTTTTTTGTGTGTGTCCTT-TGTACC-CATGTGTCAAT-AACAATAC]
[+] EMBL CD080240 [CCCTCG AGCCAANAATTCGGCACGAGGCGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAACGATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACAAGCCTTCCTGAAACCGTGTGTCCCGTCCAAACTAACCTGTTTAGTTAGGTTATGATAGTACCATGTTATGAAAGTTGTGCAGGATTAATGTCTGTCGGTTCTTTACGACTCCCTGGATGAGGTCATAGAGTACAACATAATTGGCTTGATATGTCACCAGATACGACTCATAACTGTAATTTCTTTTACTTTCTTCATATAAGTGAAAAGAACTTTTTGAACTGAGAGAATTTTTTTGGATGTATTTTTTCTTAACAGAACTGCCCTT NCCACAATTCTTTGCTCTATTTACTTATTGGTTTTTTTTCTTTAATATACTCATCTNCCTTCGTTATATCTTTAC ACCTGACTTTTTTTGTGTGTGTCCTT TGTACC CATGTGTCAAT AACAATA ]
[+] EMBL CD081932 [ CTCGNAGGCCANAATTCGGCACGAGGCGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAACGATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACAAGCCTTCCTGAAACCGTGTGTCCCGTCCAAACTAACCTGTTTAGTTAGGTTATGATAGTACCATGTTATGAAAGTTGTGCAGGATTAATGTCTGTCGGTTCTTTACGACTCCCTGGATGAGGTCATAGAGTACAACATAATTGGCTTGATATGTCACCAGATACGACTCATAACTGTAATTTCTTTTACTTTCTTCATATAAGTGAAAAGAACTTTTTGAACTGAGAGAATTTTTTTGGATGTATTTTTTCTT ACAGAACTGCCCTTCCCCAC ATTC TTGCTCTA TTACTTA TGGNTNTTTTTCTT ATATACTCATCTNCC TCGTTATATC TTACAACCTGACTTNNTTTGNGTGGNGCCTTNTGTACCNNATGTGTCAATAAACAATAC]
[+] EMBL CD139863 [ GTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCGCTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACCTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAACGATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACAAGCCTTCCTGAAAACGTGTGTCCCGTCC AACT ACCTGTTTAGTTAGG TATGATA ]
consensusID : consensus_10981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 692 fasta sequence
[TCCTTCTGTTCCATGCGCTCTACTGGCGTGATGTNCAATCATCGTTTCAAGTGTCGAGCAAAAGTCGTAATAATACGCTNCAGTCTACCATAGTGTGTGACCCTTCTCCACATATTGNAATCAGTTGCCATCNTGCCTCAGTGTTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGTGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGGCCTCAACACTAAGGTCTTTAGCTTC]
[-] EMBL CD191698 [TCCTTCTGTTCCATGCGCTCTACTGGCGTGATGTNCAATCATCGTTTCAAGTGTCGAGCAAAAGTCGTAATAATACGCTNCAGTCTACCATAGTGTGTGACCCTTCTCCACATATTGNAATCAGTTGCCATCNTGCCTCAGTGTTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGTGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGGCCTCAACACTAAGGTCTTTAGCTTC]
[+] EMBL CD145317 [ AGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGA ]
[-] EMBL CD068427 [ TCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTT ]
[-] EMBL CD134658 [ GTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACGTCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGTGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGGCCTCAACACTAAGGTCCTTAGCTTC]
consensusID : consensus_10981#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence
[AGGCCAGAATTCGGCACGAGGCGTTCTGTTCGTCAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTC-TTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTNTNTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGC]
[+] EMBL CD082662 [AGGCCAGAATTCGGCACGAGGCGTTCTGTTCGTCAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTC TTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTNTNTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGC]
[+] EMBL CD068138 [ GTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTCGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTCTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTAC ]
[+] EMBL CD196422 [ GATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTAT ]
[+] EMBL CD170170 [ CAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10981#0 GCGGCCAAAAATTCGGCACGAGGTCTCAGCATTGATTGAGTCCCGTCTGACGTTCTGTTC 60
consensus_10981#3 ---------------------------AGGCCAGAATTCGGCACGA--GGCGTTCTGTTC 31
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 GTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAG 120
consensus_10981#3 GTCAA-TAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAG 90
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 CTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGAC 180
consensus_10981#3 CTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGAC 150
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 GTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTT 240
consensus_10981#3 GTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTT 210
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 ATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACAT 300
consensus_10981#3 ATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACAT 270
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 ------------------------------------------------------------
consensus_10981#0 TGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGC 360
consensus_10981#3 TGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGC 330
consensus_10981#2 ----------------------------TCCTTCTGTT-----CCATGCGCTCTACTGGC 27
consensus_10981#1 ---------------------CCCTCGAGCCAANAATTCGG---CACGAGGCGTTCCGGC 36
* * ** * * * ***
consensus_10981#0 -TGGAGTTCCTTC-TTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCA 418
consensus_10981#3 -TGGAGTTCCTTC-TTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCA 388
consensus_10981#2 GTGATGTNCAATCATCGTTTCAAGTGTCGAGCAAAAGTCG-----TAATAATACGCTNCA 82
consensus_10981#1 -TGGAGTTCCTTC-TTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCA 94
** ** * ** * *** ** * * * ** * *** ** * **
consensus_10981#0 AGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCA 478
consensus_10981#3 AGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCA 448
consensus_10981#2 GTCTACCATAGTGT-GTGACCCTTCTCCACATATT-GNAATCAGTTGCCATCNTGCCTCA 140
consensus_10981#1 AGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCA 154
* * *** *** ********* ***** * ************** *******
consensus_10981#0 GTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTC 538
consensus_10981#3 GTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTC 508
consensus_10981#2 GTGTTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTC 200
consensus_10981#1 GTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTC 214
** ********************************************************
consensus_10981#0 GCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAA 598
consensus_10981#3 GCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAA 568
consensus_10981#2 GCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAA 260
consensus_10981#1 GCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAA 274
************************************************************
consensus_10981#0 CTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTT 658
consensus_10981#3 CTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTN 628
consensus_10981#2 CTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTT 320
consensus_10981#1 CTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTT 334
***********************************************************
consensus_10981#0 TTTTTACTTGTACATAACCAGAG----TTATCAAGGGTAAAG--CTTTTGCTCTTCCGGC 712
consensus_10981#3 TNTTTACTTGTACATAACCAGAG----TTATCAAGGGTAAAG--CTTTTGCTCTTCCGGC 682
consensus_10981#2 TTTTTACTTGTACATAACCAGAG----TTATCAAGGGTAAAG--CTTTTGCTCTTCCGGC 374
consensus_10981#1 TTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAAC 394
* ********************* * **** * * *** * * *
consensus_10981#0 GTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACT 772
consensus_10981#3 ------------------------------------------------------------
consensus_10981#2 GTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACT 434
consensus_10981#1 GATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACA 454
consensus_10981#0 CCGATTCCTTTTTACTTGTTTC---TCCTGTCGGATCTGGGAAGCT---CCAAAGTACTG 826
consensus_10981#3 ------------------------------------------------------------
consensus_10981#2 CCGATTCCTTTTTACTTGTTTC---TCCTGTCGGATCTGGGAAGCT---CCAAAGTACTG 488
consensus_10981#1 AGCCTTCCTGAAACCGTGTGTCCCGTCCAAACTAACCTGTTTAGTTAGGTTATGATAGTA 514
consensus_10981#0 TTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATC- 885
consensus_10981#3 ------------------------------------------------------------
consensus_10981#2 TTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATC- 547
consensus_10981#1 CCATGTTATGAAAGTTGTGCAGGATTAATGTCTGTCGGTTCTTTACGACTCCCTGGATGA 574
consensus_10981#0 GTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAA 945
consensus_10981#3 ------------------------------------------------------------
consensus_10981#2 GTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAA 607
consensus_10981#1 GGTCATAGAGTACAACATAATTGGCTTGATATGT-CACCAGATACGACTCATAACTGTAA 633
consensus_10981#0 GTTTTTCTGGCTTTCCTGGGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGG 1005
consensus_10981#3 ------------------------------------------------------------
consensus_10981#2 GTTTTTCTGGCTTTCCTGTGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGG 667
consensus_10981#1 -TTTCTTTTACTTTCTTCATATAAGTGAAAAGAACTTTTTGAACTGAGAGAATTTTTTTG 692
consensus_10981#0 ------------------------------------------------------------
consensus_10981#3 ------------------------------------------------------------
consensus_10981#2 CCTCAACACTAAGGTCTTTAGCTTC----------------------------------- 692
consensus_10981#1 GATGTATTTTTTCTTAACAGAACTGCCCTTNCCACAATTCTTTGCTCTATTTACTTATTG 752
consensus_10981#0 ------------------------------------------------------------
consensus_10981#3 ------------------------------------------------------------
consensus_10981#2 ------------------------------------------------------------
consensus_10981#1 GTTTTTTTTCTTTAATATACTCATCTNCCTTCGTTATATCTTTACACCTGACTTTTTTTG 812
consensus_10981#0 ------------------------------------
consensus_10981#3 ------------------------------------
consensus_10981#2 ------------------------------------
consensus_10981#1 TGTGTGTCCTTTGTACCCATGTGTCAATAACAATAC 848
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||