cluster # 10988

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Schistosoma mansoni
cluster # 10988 cluster # 10988 Sequences # 27 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10988#0 length = 1038 sequences # 15
consensus_10988#1 length = 680 sequences # 5

consensus_10988#2 length = 665 sequences # 6
consensus_10988#3 length = 278 sequences # 1

consensusID : consensus_10988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1038
fasta sequence

                              [CAGTCTTGACCTCCATTTGTCATGAATGCGTCGGACTTGTCGATTATAGGCTGTCGCGTCAGTATAATATCTAAAGCTAAGATAAGATATGAAGGAAACCTTCACTCCATAGATTTTGACACGCCCAATGAACCGGTTATTACTCTTTCAAAAGTTTGGTCTTTCGGCACTGAGGACCGCCCTTGTGAGCGACCAGTTGCTCCGCGGAATGAAGAGTATAATCAGGTGGTGTTTCGTGGACGGGATCTAGACGATGTGCGTGTCGTGCAGTCTTCTGTATTTTTAAATGAAGACTCAGCAATTGTTAGTGCCGCACCTGGGTCTGCTTTGTCCCACCCCCCTGGACTCCCAGTTAATGAAAGTAGAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGACTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTAGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGACTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAATACACCCAATTATTATCAGGGGCATGA-TTACTCAAGGGATAGACGCGGAGGATATAGTCAACAAT-GGTCAACAAACCATCGTGGCTCCAGGGGTTCTGGGCATACTTACGGTTGGTTGGGGTGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAAC]

[+] EMBL CD186999             [CAGTCTTGACCTCCATTTGTCATGAATGCGTCGGACTTGTCGATTATAGGCTGTCGCGTCAGTATAATATCTAAAGCTAAGATAAGATATGAAGGAAACCTTCACTCCATAGATTTTGACACGCCCAATGAACCGGTTATTACTCTTTCAAAAGTTTGGTCTTTCGGCACTGAGGACCGCCCTTGTGAGCGACCAGTTGCTCCGCGGAATGAAGAGTATAATCAGGTGGTGTTTCGTGGACGGGATCTAGACGATGTGCGTGTCGTGCAGTCTTCTGTATTTTTAAATGAAGACTCAGCAATTGTTAGTGCCGCACCTGGGTCTGCTTTGTCCCACCCCCCTGGACTCCCAGTTAATGAAAGTAGAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGACTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCAAACgtcacagtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AI977079             [CAGTCTTGACCTCCATTTGTCATGAATGCGTCGGACTTGTCGATTATAGGCTGTCCCGTCAGTATAATATCTAAAGCTAAGATAAGATATGAAGGAAACCTTCACTCCATAGATTTTGACACGCCCAATGAACCGGTTATTACTCTTTCAAAAGTTTGGTCTTTCGGCACTGAGGACCGCCCTTGTGAGCGACCAGTTGCTCCGCGGAATGAAGAGTATAATCAGGTGGTGTTTCGTGGACGGGATCTAGACGATGTGCGTGTCGTGCAGTCTTCTGTATTTTTAAATGAAGACTCAGCAATCGTTAGTGCCGCACCTGGGACTGCTTTGTCCCACCCACCTGGACTCCCAGTTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD189544             [                                                           CAGTATAATATCTAAAGCTGAGATAAGATATGAAGGAAACCTTCACTCCATAGATTTTGACACGCCCAATGAACCGGTTATTACTCTTTCAAAAGTTTGGTCTTTCGGCACTGAGGACCGCCCTTGTGAGCGACCAGTTGCTCCGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BG930194             [                                                                                                                                                                                                                                                      gtcGACGATGTGCGTGTCGTGCAGTCTTCTGTATTTTTAAATGAAGACTCAGCAATTGTTAGTGCCGCACCTGGGTCTGCTTTGTCCCACCCCCCTGGACTCCCAGTTAATGAAAGTAGAGGTCGCTTGGATCTTAATCCTAATCGTGTTTCGACTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGACTTTCAACACAT                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD154145             [                                                                                                                                                                                                                                                                        GTGCAGTCTTCTGTATTTTTAAATGAAGACTCAGCAATTGTTAGTGCCGCACCTGGGTCTGCTTTGTCCCACCCCCCTGGACTCCCAGTTAATGAAAGTAGAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGACTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCGGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTAGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGACTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAATACACCCAATTATTATCAGGGGCATGA TTACTCAAGGGATAGACGCGGAGGATATAGTCAACAAT GGTCAA                                                                                                                                                                                            ]
[+] EMBL AI067220             [                                                                                                                                                                                                                                                                                                                              GGGTCTGCTTTGTCCCACCCCCCTGGACTCCCAGTTAATGAAAGTAGAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGACTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTAGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGACTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAATACACCCAATTATTATCAGGGGCATGA TTACTCAATGGATAGACGCGGAGGATATAGTCAACAAT GGTCAACAAACCATCGTGGCTCCAGGGGTTCTGGGCATACTTACG                                                                                                                                                     ]
[+] EMBL CD132726             [                                                                                                                                                                                                                                                                                                                                         GTCCCACCCCCCTGGACTCCCAGTTAATGAAAGTAGAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGGCTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGG                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD139559             [                                                                                                                                                                                                                                                                                                                                                                            GAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGGCTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTACAAGTTCTAGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGACTACCCGCAACCATGNGTTAACCGA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD139686             [                                                                                                                                                                                                                                                                                                                                                                            GAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGGCTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGGAGAGGAGGTACAAGTTCTAGAGATGTTC                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD184613             [                                                                                                                                                                                                                                                                                                                                                                                             AATCCTAGTCGTGTTTCGACTGGATGCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACCTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCTAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTGGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGACTACCCGCAACCATGGGTTAA                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD191192             [                                                                                                                                                                                                                                                                                                                                                                                                                                         ACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTAGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGACTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAATACACCNCATTATTATCAGGGGCATGATTTACTC AGGGATAGACGCGGAGTATATAGTCAACAATGGGTC ACAAACCATCGTGGCTCC GGGGTTCTGGGCATA                                                                                                                                                           ]
[+] EMBL CD132275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTACAAGTTCTAGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCACAATGACTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAATACACC                                                                                                                                                                                                                                                               ]
[+] EMBL CD069503             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tcctCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGTGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTAGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGACTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAATACACCCAATTATTATCAGGGGCATGA TTACTCAAGGGATAGACGCGGAGGATATAGTCAACAAT GGTCAACAAACCATCGTGGCTCCAGGGGTTCTGGGCATACTTACGGTTGGTTGGGGTGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTT            ]
[+] EMBL CD188412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTAGAGATGTTCAAGAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGACTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAATACACCCAATTATTATCAGGGGCATGA TTACTCAAGGGATAGACGCGGAGGATATAGTCAACAAT GGCCAACAAACCATCGTGGCTCCAGGGGTTCTGGGCATACTTACGG TGGTTGGGGTGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAGGTCGAATGCACCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAAC]
[+] EMBL CD112029             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTGTGCATAATGACTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAATACACCCAATTATTATCAGGGGCATGA TTACTCAAGGGATAGACGCGGAAGATATAGTCAACAAT GGTCAACAAACCATCGTGGCTCCAGGGGTTCTGGGCATA                                                                                                                                                           ]




>consensus_10988#0
CAGTCTTGACCTCCATTTGTCATGAATGCGTCGGACTTGTCGATTATAGGCTGTCGCGTC
AGTATAATATCTAAAGCTAAGATAAGATATGAAGGAAACCTTCACTCCATAGATTTTGAC
ACGCCCAATGAACCGGTTATTACTCTTTCAAAAGTTTGGTCTTTCGGCACTGAGGACCGC
CCTTGTGAGCGACCAGTTGCTCCGCGGAATGAAGAGTATAATCAGGTGGTGTTTCGTGGA
CGGGATCTAGACGATGTGCGTGTCGTGCAGTCTTCTGTATTTTTAAATGAAGACTCAGCA
ATTGTTAGTGCCGCACCTGGGTCTGCTTTGTCCCACCCCCCTGGACTCCCAGTTAATGAA
AGTAGAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGACTGGATGCTCTGAATTGTCT
CCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAAC
AATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCT
GATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGAC
ATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTAGAGATGTTCAA
GAGTCTGGACTAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGAC
TACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAAT
ACACCCAATTATTATCAGGGGCATGATTACTCAAGGGATAGACGCGGAGGATATAGTCAA
CAATGGTCAACAAACCATCGTGGCTCCAGGGGTTCTGGGCATACTTACGGTTGGTTGGGG
TGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAAA
TGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGC
TGAGTTGGAAAAAATAAC

consensusID : consensus_10988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 680
fasta sequence

                              [AANAATTCGGCACGAGGGCCAACAATGGTCAACAAACCATCGTGGCTCCAGTGGTTCTGGGCATACTTACGGTGGTTGGGGTGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAACCATCAGTACTAAAACAGGCTCGTCAGGTGCTTCCGTCGACAACGCGGAG-AATGATGGAAGCAGCACAACTGAGGATGAAAACACGTGCTATGATAAGTCCAAGTCGTTTTTCGATACCATTAGTTCCGAGATGATGGACCGCGCAAATGGCCTAAATCCTCAAGGAATGAACAGACGGGACGAAAGACTCCTCAATTCAGCAACTTTTGGTACTGTTCCACAGCAGTATCCTAGAAGGACAGGATATCACAATCAACGTTCTTTTGGATATGGCCAAAAGAGAGGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAGTGGTACTGGAACCAATAAGTCCCTATTCTCCAATTCATCACACGCACCTCTTCCACATCTGGACGAGCTGGTTGATATGAGCCTTGTACATTNTACTGGCAATAATTACTTCAATACGAAACTCCTTGACACANAATGAT]

[+] EMBL CD081416             [AANAATTCGGCACGAGGGCCAACAATGGTCAACAAACCATCGTGGCTCCAGTGGTTCTGGGCATACTTACGGTGGTTGGGGTGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAACCATCAGTACTAAAACAGGCTCGTCAGGTGCTTCCGTCGACAACGCGGAG AATGATGGAAGCAGCACAACTGAGGATGAAAACACGTGCTATGATAAGTCCAAGTCGTTTTTCGATACCATTAGTTCCGAGATGATGGACCGCGCAAATGGCCTAAATCCTCAAGGAATGAACAGACGGGACGAAAGACTCCTCAATTCAGCAACTTTTGGTACTGTTCCACAGCAGTATCCTAGAAGGACAGGATATCACAATCAACGTTCTTTTGGATATGGCCAAAAGAGAGGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAGTGGTACTGGAACCAATAAGTCCCTATTCTCCAATTCATCACACGCACCTCTTCCACATCTGGACGAGCTGGTTGATATGAGCCTTGTACATTNTACTGGCAATAATTACTTCAATACGAAACTCCTTGACACANAATGAT]
[+] EMBL CD183201             [                                                                              aGGAGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAACCATCAGTACTAAAACAGGCTCGTCAGGTGCTTCCGTCGACAACGCGGAG AATGATGGAAGCAGCACAACTGAGGATGAAAACACGTGCTATGATAAGT                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD157668             [                                                                                                gaGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAACCATCAGTACTAAAACAGGCTCGTCAGGTGCTTCCGTCGACAACGCGGAGAAATGATGG AGCAGCACAACTGAGGATG AAACACGTGCTATGATAAGTCCAAGT                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD157699             [                                                                                                           GGTCTAAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAACCATCAGTACTAAAACAGGCTCGTCAGGTGCTTCCGTCGACAACGCGGAG AATGATGGAAGCAGCACAACTGAGGATGAAAACACGTGCTATGATAAGTCCAAGTCGTTTTTCGATACCA                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD197780             [                                                                                                                AAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAACCATCAGTACTAAAACAGGCTCGTCAGGTGCTTCCGTCGACAACGCGGAG AATGATGGAAGCAGCACAACTGAGGATGAAAACACGTGCTATGATAAGTCCAAGTCGTTTTTCGATACCATTAGTTCCGAGATGATAGACCGCGCAAATGGCCTAAATCCTCAAGGAATGAACAGACGGGACGAAAGACTCCTCAATTCAGCAACTTTTGGTACTGTTCCACAGCAGTATCCTAGAAGGACAGGATATCACAATCAACGTTCTTTTGGATATGGCCAAAAGAGAGGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAGTGGTACTGGAACCAATAAGTCCCTATTCTC                                                                                                              ]




>consensus_10988#1
AANAATTCGGCACGAGGGCCAACAATGGTCAACAAACCATCGTGGCTCCAGTGGTTCTGG
GCATACTTACGGTGGTTGGGGTGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAG
GTCGAATGCATCTACAGTAAATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAG
AGCTAACGCAGAACTCGCAGCTGAGTTGGAAAAAATAACCATCAGTACTAAAACAGGCTC
GTCAGGTGCTTCCGTCGACAACGCGGAGAATGATGGAAGCAGCACAACTGAGGATGAAAA
CACGTGCTATGATAAGTCCAAGTCGTTTTTCGATACCATTAGTTCCGAGATGATGGACCG
CGCAAATGGCCTAAATCCTCAAGGAATGAACAGACGGGACGAAAGACTCCTCAATTCAGC
AACTTTTGGTACTGTTCCACAGCAGTATCCTAGAAGGACAGGATATCACAATCAACGTTC
TTTTGGATATGGCCAAAAGAGAGGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAG
TGGTACTGGAACCAATAAGTCCCTATTCTCCAATTCATCACACGCACCTCTTCCACATCT
GGACGAGCTGGTTGATATGAGCCTTGTACATTNTACTGGCAATAATTACTTCAATACGAA
ACTCCTTGACACANAATGAT

consensusID : consensus_10988#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 665
fasta sequence

                              [TAATCCCTCAAGGAATGAACAGACGGGACGANAGACTCCTCAATTCAGCAACTTTTGGTACTG-TCCACAGCAGTATCCTAGAAGGACAGGATATCACAATCAACGTTCTTTTGGATATGGCCAAAAGAGAGGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAGTGGTACTGGAACCAATAAGTCCCTATTCTCCAATTCATCACACGCACCTCTTCCAACATCTGGACGAGCTGGTTGATATGAGCCTTGTACATTTTACTGCAAATAATTACTTCAATACGAAACTCCTTGACACAAAATGATCGACCGATATCCAAACTTATCTCGGTCCTTACAGATGACTTAATAGCTCATGTTTCTATGGGACTAATTTAATTATTTTTGATCGACAAAATGCATACTGTAAAACCAGTTAGTGCTTCTATTGGTGTAATACTGTTCGGAATAGAACTGTTTACTTTAGTGTTTAAGCACGGTTGCGTCTATTGTTTGTTGTAATTGCTTTTCGGTCTGACTGTTGGTTTAGTTCGAGCAGTTTACATTTTTTGAAATATAATCATGTAAATACCTGTTTTGCAAATATATTTGAAATAATAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]

[-] EMBL CD157693             [TAATCCCTCAAGGAATGAACAGACGGGACGANAGACTCCTCAATTCAGCAACTTTTGGTACTG TCCACAGCAGTATCCTAGAAGGACAGGATATCACAATCAACGTTCTTTTGGATATGGCCAAAAGAGAGGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAGTGGTACTGGAACCAATAAGTCCCTATTCTCCAATTCATCACACGCACCTCTTCCAACATCTGGACGAGCTGGTTGATAT                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL BF936858             [          AGGAATGAACAGACGGGACGAAAGACTCCTCAATTCAGCAACTTTTGGTACTGTTCCACAGCAGTATCCTAGAAGGACAGGATATCACAATCAACGTTCTTTTGGATATGGCCAAAAGAGAGGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAGTGGTACTGGAACCAATAAGTCCCTATTCTCCAATTCATCACACGCACCTCTTCCAACATTTGGACGAGCTGGTTGATATGAGCCTTGTACATTTTACTGCAAATAATTACTTCAATACGAAACTCCTTGACACAAAATGATCGACCGATATCCAAACTTATCTCGGTCCTTACAGATGACTTAATAGCTCATGTTTCTATGGGACTAATTTAATTATTTTTGATCGACAAAATGCATACTGTAAAACCAGTTAGTGCTTCTATTGGTGTAATACTGTTCGGAATAGAACTGTTTACTTTAGTGTTTAAGCACGGTTGCGTCTATTGTTTGTTGTAATTGCTTTTCGGTCTGACTGTTGGTTTAGTTCGAGCAGTTTACATTTTTTGAAATATAATCATGTAAATACCTGTTTTGCAAATATATTTGAAATAATAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[-] EMBL CD075244             [                                                                                                                                              TTCTAGTGGTAACTTTTGGCGATCTAGTGGTACTGGAACCAATAAGTCCCTA TCTCCAATTCATCACACGCACCTCTTCCAACATCTGGACGAGCTGGTTGATATGAGCCTTGTACATTTTACTGCAAATAATTACTTCAATACGAAACTCCTTGACACAAAATGATCGACCGATATCCAAACTTATCTCGGTCCTTACAGATGACTTAATAGCTCATGTTTCTATGGGACTAATTTAATTATTTTTGATCGACAAAATGCATACTGTAAAACCAGTTAGTGCTTCTATTGGTGTAATACTGTTCGGAATAGAACTGTTTACTTTAGTGTTTAAGCACGGTTGCGTCTATTGTTTGTTGTAATTGCTTTTCGGTCTGACTGTTGGTTTAGTTCGAGCAGTTTACATTTTTTGAAATATAATCATGTAAATACCTGTTTTGCAAATATATTTGAA                                                                       ]
[-] EMBL AI976820             [                                                                                                                                                                                                               CACACGCACCTTTTCCAACATCTGGACGAGCTGGTTGATATGAGCCTTGTACATTTTACTGCAAATAATTACTTCAATACGAAACTCCTTGACACAAAATGATCGACCGATATCCAAACTTATCTCGGTCCTTACAGATGACTTAATAGCTCATGTTTCTATGGGACTAATTTAATTATTTTTGATCGACAAAATGCATACTGTAAAACCAGTTAGTGCTTCTATTGGTGTAATACTGTTCGGAATAGAACTGTTTACTTTAGTGTTTAAGCACGGTTGCGTCTATTGTTTGTTGTAATTGCTTTTCGGTCTGACTGTTGGTTTAGTTCGAGCAGTTTACATTTTTTGAAATATAATCATGTAAATACCTGTTTTGCAAATATATTTGAAATAAT        AAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT     ]
[-] EMBL AI395121             [                                                                                                                                                                                                                                                                                     ACTCCAATCCGAAACTCCTTGACACAAACTGATCGACCGATATCCAAACTTATCTCGGTCTTTACGGATGACTTAATAGCTCATGCTCCTATGGGTCTAAGTTACTTATTTTTAATCGACAAAATGCATACTGTAAAACCAGTTAGTGCCTTGATTGCTGTAATACTGTTCGGAATAGAACTGTTTACTTTAGTGTTTAAGCACGGTTGCGTCTATTGTCTGTTGTAATTGCTTTTCGGTCTGACTGTTGGTTTACTTCGAGCAGTTTACATCTTTTGAAATATAATCATGTAAATACCTGTTTTGCAACTATATTTGAAATACTAA  AAAAAAAAAAAACAAAAA                                            ]
[-] EMBL AI394993             [                                                                                                                                                                                                                                                                                                   cgCCTTGACCCAAAATGATCGACCGGTATCCAAATTTATCTCGGTCCTTACAGATGACTTAATAGCTCATGTTTCTATGGGACTAATTTAATTATTTTTGATCGACAAAATGCATACTGTAAAACCAGTTAGTGCTTCTATTGGTGTAATACTGTTCGGAATAGAACTGTTTACTTTAGTGTTTAAGCACGGTTGCGTCTATTGTTTGTTGTAATTGCTTTTCGGTCTGACTGTTGGTTTAGTTCGAGCAGTTTACATTTTTTGAAATATAATCATGTAAATACCTGTTTTGCAAATATATTTGAAATAATAA  AAAAAAAAAAAAAAAAA                                             ]




>consensus_10988#2
TAATCCCTCAAGGAATGAACAGACGGGACGANAGACTCCTCAATTCAGCAACTTTTGGTA
CTGTCCACAGCAGTATCCTAGAAGGACAGGATATCACAATCAACGTTCTTTTGGATATGG
CCAAAAGAGAGGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAGTGGTACTGGAAC
CAATAAGTCCCTATTCTCCAATTCATCACACGCACCTCTTCCAACATCTGGACGAGCTGG
TTGATATGAGCCTTGTACATTTTACTGCAAATAATTACTTCAATACGAAACTCCTTGACA
CAAAATGATCGACCGATATCCAAACTTATCTCGGTCCTTACAGATGACTTAATAGCTCAT
GTTTCTATGGGACTAATTTAATTATTTTTGATCGACAAAATGCATACTGTAAAACCAGTT
AGTGCTTCTATTGGTGTAATACTGTTCGGAATAGAACTGTTTACTTTAGTGTTTAAGCAC
GGTTGCGTCTATTGTTTGTTGTAATTGCTTTTCGGTCTGACTGTTGGTTTAGTTCGAGCA
GTTTACATTTTTTGAAATATAATCATGTAAATACCTGTTTTGCAAATATATTTGAAATAA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT
GCGTA

consensusID : consensus_10988#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [GCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGAC]

[-] EMBL BG931653             [GCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTCCTACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGAC]




>consensus_10988#3
GCTCTGAATTGTCTCCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGA
ATAACTACCCGAACAATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAG
GGACCGTTCATGCTGATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAG
ATATGCGTAGCGACATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTCCTACTA
GACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10988#0      CAGTCTTGACCTCCATTTGTCATGAATGCGTCGGACTTGTCGATTATAGGCTGTCGCGTC 60
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      ------------------------------------------------------------
consensus_10988#2      ------------------------------------------------------------
                                                                                   

consensus_10988#0      AGTATAATATCTAAAGCTAAGATAAGATATGAAGGAAACCTTCACTCCATAGATTTTGAC 120
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      ----------------------AANAATTCGGCACGAGGGCCAACAATGGTCAACAAACC 38
consensus_10988#2      ------------------------TAATCCCTCA-AGGAATGAACAGACGGGACGANAGA 35
                                                                                   

consensus_10988#0      ACGCCCAATGAACCGGTTATTACTCTTTCAAAAGTTTGGTCTTTCGGCACTGAGGACCGC 180
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      ATCGTGGCTCCAGTGGTTCTGGGCA-TACTTACGGTGGTTGGGGTGGGCGGTCAACAGGT 97
consensus_10988#2      CTCCTCAATTCAGCAACTTTTGGTACTGTCCACAGCAGT-ATCCTAGAAGG---ACAGGA 91
                                                                                   

consensus_10988#0      CCTTGTGAGCGACCAGTTGCTCCGCGGAATGAAGAGTATAATCAGGTGGTGTTTCGTGGA 240
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      GGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAAATGAGCACACCAAC--- 154
consensus_10988#2      TATCACAATCAACGTTCTTTTGGATATGGCCAAAAGAGAGGGGGTAATTCTTCTAGTGGT 151
                                                                                   

consensus_10988#0      CGGGATCTAGACGATGTGCGTGTCGTGCAGTCTTCTGTATTTTTAAATGAAGACTCAGCA 300
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      --TTTTCGGTGGAATA-TGACTATGAAAGAGCTAACGCAGAACTCGCAGCTGAGTTGGAA 211
consensus_10988#2      AACTTTTGGCGATCTAGTGGTACTGGAACCAATAAGTCCCTATTCTCCAATTCATCACAC 211
                                                                                   

consensus_10988#0      ATTGTTAGTGCCGCACCTGGGTCTGCTTTGTCCCACCCCCCTGGACTCCCAGTTAATGAA 360
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      AAAATAACCATCAGTACTAAAACAGGCTCGTCAGGTGCTTCCGTCGACAACGCGGAGAAT 271
consensus_10988#2      GCACCT-CTTCCAACATCTGGACGAGCTGGTTGA-------TATGAGCCTTGTACATTTT 263
                                                                                   

consensus_10988#0      AGTAGAGGTCGCTTGGATCTTAATCCTAGTCGTGTTTCGACTGGATGCTCTGAATTGTCT 420
consensus_10988#3      ----------------------------------------------GCTCTGAATTGTCT 14
consensus_10988#1      GATGGAAGCAGCA--CAACTGAGGATGAAAACACGTGCTATGATAAGTCCAAGTCGTTTT 329
consensus_10988#2      ACTGCAAATAAT---TACTTCAATACGAAACTCCTTGACACAAAATGATCGA-CCGATAT 319
                                                                     *  *       * *

consensus_10988#0      CCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAAC 480
consensus_10988#3      CCCATACCAGCATCTCAGTCTGTTTCACTTGATAATCTAAATCAGAATAACTACCCGAAC 74
consensus_10988#1      TCGATACCATTAGTTCCGAGA---TGATG-GACCGCGCAAAT-GGCCTAAATCCTCAAGG 384
consensus_10988#2      CCAA-AC--TTATCTCGGTCC---TTACA-GATGACTTAA-T-AGCTCATGTTTCTATGG 370
                        * * **    *  ** *      * *   **      ** *  *   *  *        

consensus_10988#0      AATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCT 540
consensus_10988#3      AATTCATACCAGATGCCTGCAGTCGGTTGTCGACCAGCTCCTATAGGGACCGTTCATGCT 134
consensus_10988#1      AATGAACAG-ACGGGACGAAAGACTCCTCAATTCAGCAACTTTTGGTACTGTTCCACAGC 443
consensus_10988#2      GACTAATTT-AATTATTTTTGATCGACAAAAT---GCATACTGTAAAACCAGTTAGTGCT 426
                        *   *    *            *                 * *        *       

consensus_10988#0      GATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGAC 600
consensus_10988#3      GATACCCCCCAGGTTTCTGATACTCATGGCCCAAGGCCATTTGGAGATATGCGTAGCGAC 194
consensus_10988#1      AGTATCCTAGAAGGA-CAGGATATCACAATCAACGTTCTTTTGGATATGGCCAAAAGAGA 502
consensus_10988#2      TCTATTGGTGTAATA-CTGTTCGGAATAGA-ACTGTTTACTTTAGTGTTTAAGCACGGTT 484
                         **            * *      *        *     **     *      *     

consensus_10988#0      ATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGTATAAGTTCTAGAGATGTTCAA 660
consensus_10988#3      ATAGATCCAGGGATTTTCAGCACATCTGGAAGAGGAGGT--------------------- 233
consensus_10988#1      GGGGGTAATTCTTCTAGTGGTAACTTTTGGCGATCTAGTGGT--ACTGGAACCAATAAGT 560
consensus_10988#2      GCGTCTATTGTTTGTTGTAATTGCTTTT--CGGTCTGACTGTTGGTTTAGTTCGAGCAGT 542
                            *        *         * *    *                            

consensus_10988#0      GAGTCTGGACTAGGTCCT-ACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGA 719
consensus_10988#3      ---------------CCT-ACTAGACATCGTGCTGTCCTAGGATCTGGTGTGCATAATGA 277
consensus_10988#1      CCCTATTCTCCAATTCATCAC-----ACGCACCTCTTCCACATCTGGACGAGCTGGTTGA 615
consensus_10988#2      TTACATTTTTTGAAATATAATCATGTAAATACCTGTTTTGCAAATATATTTG--AAATAA 600
                                        * *      *     ** *               *     * *

consensus_10988#0      CTACCCGCAACCATGGGTTAACCGAGATCAAGGAGTTAGAAAGGGTGACACTCACAAAAA 779
consensus_10988#3      C----------------------------------------------------------- 278
consensus_10988#1      TATGAGCCTTGTACATTNTACTGGCAATAATTACTTCAATACGAAACTCCTTGACACANA 675
consensus_10988#2      TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAT-GCCATGCAGCTGCATTAC-CGTA 658
                                                                                   

consensus_10988#0      TACACCCAATTATTATCAGGGGCATGATTACTCAAGGGATAGACGCGGAGGATATAGTCA 839
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      ATGAT------------------------------------------------------- 680
consensus_10988#2      CTGCGTA----------------------------------------------------- 665
                                                                                   

consensus_10988#0      ACAATGGTCAACAAACCATCGTGGCTCCAGGGGTTCTGGGCATACTTACGGTTGGTTGGG 899
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      ------------------------------------------------------------
consensus_10988#2      ------------------------------------------------------------
                                                                                   

consensus_10988#0      GTGGGCGGTCAACAGGTGGTCATGATTGGTCTAAATTCAGGTCGAATGCATCTACAGTAA 959
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      ------------------------------------------------------------
consensus_10988#2      ------------------------------------------------------------
                                                                                   

consensus_10988#0      ATGAGCACACCAACTTTTCGGTGGAATATGACTATGAAAGAGCTAACGCAGAACTCGCAG 1019
consensus_10988#3      ------------------------------------------------------------
consensus_10988#1      ------------------------------------------------------------
consensus_10988#2      ------------------------------------------------------------
                                                                                   

consensus_10988#0      CTGAGTTGGAAAAAATAAC 1038
consensus_10988#3      -------------------
consensus_10988#1      -------------------
consensus_10988#2      -------------------