These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 1747 fasta sequence [AGGGCCTTCAGAATGGAATGTATTGGGATGATGTCACAGGTGCTGAAGATCGCATAGAAGGATTCACATAACTTTTCTTCGTTCCTGGTCGATTTACTATTGATGGAGACATTTTTGTAGGACTTGGTGAAGATGTTGAACAAGGAAAGACTGATTCAGGTGTTCTATTTGTCTCCAAATCTGAATATGTAGTTGAAATATTCGGTTCAGAATTGATGGTGGGCTTTGTACACAAACACGAGTCATCTCCATCCGATAATACAGGTGAAGGGACGTTTAAATTAGAGATTGTAAGCGTGGACACTACAGGAACATAAGGACTTCCAGTCATCCCCATTCCAACATATGGTTGTGGAGAACAGTGCATTCGAATCAAACTTGAAGGACTGTACACAGTCGAACCAGCTGCAGCTCGAGTAACAATATTACCTGGTCCCAAACGAACTATATCTGTGGCCGCTATGTTGTATGTAACATTTGTAGAAGATAAAGATGGGGTATTCGTTGGACTAGGAACATTTGAACATGAAAAGAAAGAACTTGATTGGGAATGAGATGACACAGTATGTTTCACGTTGGTGGGAGACGTACAAGCAGATACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGAGATGTGGTGCACTGCGATAGACGAGGATTGCAATGAGCAGTATGGGTAGGAGAAATAGGAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCTAATTGAGACTCGCATGAACCAATAACAGGAGAACAGGTAGAAGTGTGCTTTGGTTTGTAATTTATTTGCGGACTAGGTTTTTCGAGGGAGCTGTTCTTTACATTAACATTGCGTTGTGACTTCGCAGTGTCTGGAAATGAGTGATATGCCTGTCTATGTATTATTCGCANATTCTCATGTTCTGATTTGTCTGATGAGAGTTCAGTAACTTTATTTATTGTTTGACAAATTGTTTTGTTACCAACTTCTACTGGGAAGGAACAACATATTTCACCACCATTATCTATCACTTTCAGTTTCAGTTCACCGGAACTGGTAGAGTCATTAATTAAAGACTTCAATTCATCGAGTTTTAGTCCACTAGTAGGGATCCTGTCGATAGACGTTACAAGGTCCCCAACTTTTAATCCGGCTGATAATATTGAATTCGATGGAGAGACCGAAATTACACGACTGTACTGGGAAACGACATATGACTGATTAATCTCGGGAATATTCTTAGCAAAGGCGTCTTAAATATAACGGACGTTTGCGCTTTTATAAATTAAACGCAGTGTTCTGCGAGACGGGATTATTTCAGCCAT] [+] EMBL CD085950 [AGGGCCTTCAGAATGGAATGTATTGGGATGATGTCACAGGTGCTGAAGATCGCATAGAAGGATTCACATAACTTTTCTTCGTTCCTGGTCGATTTACTATTGATGGAGACATTTTTGTAGGACTTGGTGAAGATGTTGAACAAGGAAAGACTGATTCAGGTGTTCTATTTGTCTCCAAATCTGAATATGTAGTTGAAATATTCGGTTCAGAATTGATGGTGGGCTTTGTACACAAACACGAGTCATCTCCATCCGATAATACAGGTGAAGGGACGTTTAAATTAGAGATTGTAAGCGTGGACACTACAGGAACATAAGGACTTCCAGTCATCCCCATTCCAACATATGGTTGTGGAGAACAGTGCATTCGAATCAAACTTGAAGGACTGTACACAGTCGAACCAGCTGCAGCTCGAGTAACAATATTACCTGGTCCCAAACGAACTATATCTGTGGCCGCTATGTTGTATGTAACATTTGTAGAAGATAAAGATGGGGTATTCGTT ] [+] EMBL CD061679 [ tcGGGACGTTTAAATTAGAGATTGTAAGCGTGGACACTACAGGAACATAAGGACTTCCAGTCATCCCCATTCCAACATATGGTTGTGGAGAACAGTGCATTCGAATCAAACTTGAAGGACTGTACACAGTCGAACCAGCTGCAGCTCGAGTAACAATATTACCTGGTCCCAAACGAACTATATCTGTGGCCGCTATGTTGTATGTAACATTTGTAGAAGATAAAGATGGGGTATTCGTTGGACTAGGAACATTTGAACATGAAAAGAAAGAACTTGATTGGGAATGAGATGACACAGTATGTTTCACGTTGGTGGGAGACGTACAAGCAGATACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGA ] [-] EMBL CD085886 [ TTTGAACATGAAAAGAAAGAACTTGATTGGGAATGAGATGACACAGTATGTTTCACGTTGGTGGGAGACGTACAAGCAGATACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGAGATGTGGTGCACTGCGATAGACGAGGATTGCAATGAGCAGTATGGGTAGGAGAAATAGGAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATA ] [-] EMBL CD085948 [ GTACAAGCAGATACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGAGATGTGGTGCACTGCGATAGACGAGGATTGCAATGAGCAGTATGGGTAGGAGAAATAGGAACATGTGATCGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATA ] [+] EMBL CD200645 [ AGCAGATACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGAGATGTGGTGCACTGCGATAGACGAGGATTGCAATGAGCAGTATGGGTAGGAGAAATAGGAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGAT ] [-] EMBL CD200708 [ GCAGATACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTNTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGAGATGTGGTGCACTGCGATAGACGAGGATTGCAATGAGCAGTATGGGTAGGAGAAATAGGAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATA ] [-] EMBL CD091221 [ TTTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGAGATGTGGTGCACTGCGATAGACGAGGATTGCAATGAGCAGTATGGGTAGGAGAAATAGGAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGC ] [+] EMBL CD094760 [ GATTGCAATGAGCAGTATGGGTAGGAGAAATAGGAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCTAATTGAGACTCGCATGAACCAATAACAGGAGAACAGGTAGAAGTGTGCTTTGGTTTGTAATTTATTTGCGGACTAGG TTTTCGAGAGGGAAGTTn ] [+] EMBL CD065244 [ aATAGGAAGGAGAAATAGGAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACTGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCTAATTGAGACTCGCATGAACCAATAACAGGAGAACAGGTAGAAGTGTGCTTTGGTTTGTAATTTATTTGCGGACTAGGTTTTTCGAGGGAGCTGTTCTTTACATTAACATTGCGTTGTGACTTCGCAGTGTCTGGAAATGAGTGATATGCCTGTCTATGTATTATTCGCANATTCTCATGTTCTGATTTGTCTGATGAGAGTTCAGTAACTTTATTTATTGTTTGACA ] [-] EMBL CD126655 [ GGGTAGGAGAAATAGGAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCC CCATCGA ] [+] EMBL CD129384 [ TGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAG ] [+] EMBL CD095225 [ TACCGGGACTTCGAACAAGGTTAACAGGTTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCT ] [+] EMBL CD094857 [ TACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCT ] [+] EMBL CD095078 [ TACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCT ] [+] EMBL CD095175 [ TACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCT ] [+] EMBL CD095272 [ TACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCT ] [+] EMBL CD095273 [ TACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGGTGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCT ] [-] EMBL CD094850 [ ACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCTA ] [-] EMBL CD085697 [ ACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCTA ] [-] EMBL CD094823 [ ACCGGGACTTCGAACAAGGTTAACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCGTCGATAGCTAGTCTTGCAACTGCACCTA ] [-] EMBL CD095048 [ ACAGATTGGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAGGGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGTAGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGTGCCCAAGTTGATTAGTTTCTGAAGACCCTACTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCTA ] [+] EMBL CD155048 [ TTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCACCATCGATAGCTAGTCTTGCAACTGCACCTAATTGAGACTCGCATGAACCAATAACAGGAGAACAGGTAGAAGTGTGCTTTGGTTTGTAATTTATTTGCGGACTAGGTTTTTCGAGGGAGCTGTTCTTTACATTAACATTGCGTTGTGACTTCG ] [-] EMBL CD112351 [ GACTTCGCAGTGTCTGGAAATGAGCGATATGCCTGTCTATGTATTATTCGCAAATTCTCATGTTCTGA TTGTCTGATGAGAGTTCAGTAACTTTATTTATTGTTTGACAAATTGTTTTGTTACCAACTTCTACTGGGAAGGAACAACATATTTCACCACCATTATCTATCACTTTCAGTTTCAGTTCACCGGAACTGGTAGAGTCATTAATTAAAGACTTCAATTCATCGAGTTTTAGTCCACTAGTAGGGATCCTGTCGATAGACGTTACAAGGTCCCCAACTTTTAATCCGGCTGATAATATTGAATTCGATGGAGAGACCGAAATTACACGACTGTACTGGGAAACGACATATGACTGATTAATCTCGGGAATATTCTTAGCAAAGGCGTCTTAAATATAACGGACGTTTGCGCTTTTATAAATTAAACGCAGTGTTCTGCGAGACGGGATTATTTCAGCCAT] consensusID : consensus_10993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence [CTGCATTATGGGAGGGCGCACGATTCGAGTCTGTTTTCTGAGGATGTTTCGATG-ATTAGTTCGGATTATTGTCCATGACTTCTTTATGAATTCAAATGCCTAACGCATAAACCTTTCAGATCAAATATTTTAGGTACAATTTTGTAAATAATTTTACGACTCTAAAACAATGTTTCTCAATTTATGATGCTGTGATCACAAGTGGCTTACCAACCTAACAAATGAGACTAAAAAGCATGTGTGGATACCTCTTTTTGTTACATCTTCATTAAAAACTTAATGAGACCATGATATGCAGAAAATCTCATCCTAAATATCTAAATGGTGATTCGTATGTCAGGTTCTTTACCGAAATGGTGTAGATTATTTTCATTATTTCTCATTTAAAGTATGGTAGATTCGGCTTTAAAGGTAGTTGTTGGTGATGGAGAGTTTGTTCTTGACGAACCAGATGTCGTTTCCCAGTACAGTCGTGTAATTTCGGTCTCTCCATCGAATTCAATATTATCAGCCGGATTAAAAGTTGGGGACC] [+] EMBL CD094617 [CTGCATTATGGGAGGGCGCACGATTCGAGTCTGTTTTCTGAGGATGTTTCGATG ATTAGTTCGGATTATTGTCCATGACTTCTTTATGAATTCAAATGCCTAACGCATAAACCTTTCAGATCAAATATTTTAGGTACAATTTTGTAAATAATTTTACGACTCTAAAACAATGTTTCTCAATTTATGATGCTGTGATCACAAGTGGCTTACCAACCTAACAAATGAGACTAAAAAGCATGTGTGGATACCTCTTTTTGTTACATCTTCATTAAAAACTTAATGAGACCATGATATGCAGAAAATCTCATCCTAAATATCTAAATGGTGATTCGTATGTCAGGTTCTTTACCGAAATGGTGTAGATTATTTTCATTATTTCTCATTTAAAGTATGGTAGATTCGGCTTTAAAGGTAGTTGTTGGTGATGGAGAGTTTGTTCTTGACGAACCAGATGTCGTTTCCCAGTACAGTCGTGTAATTTCGGTCTCTCCATCGAATTCAATATTATCAGCCGGATTAAAAGTTGGGGACC] [-] EMBL CD189034 [ TGCATTATGGGAGGGCGCACGATTCGAGTCTGTTTTCTGAGGATG TTCGATGAATTAGTTCGGANTATTGTCCATGACTTCTTTATGAATTCAAATGCCTAACGCATAAACCTTTCAGATCAAATATTTTAGGTACAATTTTGTAAATAATTNTACGACTCTAAAACAATGTTTCTCAATTTATGATGCTGTGATCACAAGTGGCTTACCAACCTAACAAATGAGACTAAAAAGCATGTGTGGATACCTCTTTTTGTTACATCTTCATTAAAAACTTAATGAGACCATGATATGCAGAAAATCTCATCCTAAATATCTAAATGGTGATTCGTATGTCAGGTTCTTTACCGAAATGGTGTAGATTATTTTCATTATTTCTCATTTAAAGTATGGTAGATTCGGCTTTAAAGGTAGTTGTTGGTGATGGAGAGTTTGTTCTTGACGAACCAGA ] consensusID : consensus_10993#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [AATATTACCTGGTCCCAAACGAACTATATCTGTGGCCGCTATGCTGTATGTAACGTTTGTAGAAGATAAAGATGGGGTATTCGTTGGACTAGGAACATTTGAACATGAAAAGAAAGAACTTGATTGGGAATGAGATGACACAGTATGTTTCACGTTGGTGGGAGACGTACAAGCAGATACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGAGATGTGGTGCACTGCGATAGACGANNNTGTCTGCCNCT] [+] EMBL CD164880 [AATATTACCTGGTCCCAAACGAACTATATCTGTGGCCGCTATGCTGTATGTAACGTTTGTAGAAGATAAAGATGGGGTATTCGTTGGACTAGGAACATTTGAACATGAAAAGAAAGAACTTGATTGGGAATGAGATGACACAGTATGTTTCACGTTGGTGGGAGACGTACAAGCAGATACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTTTTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCACCAACACGAGTCATTTGAGCAGCAAGGGAAACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCACGAGATGTGGTGCACTGCGATAGACGANNNTGTCTGCCNCT] consensusID : consensus_10993#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [CCTGTCGATAGACGTTACAAGGTCCCCAACTTTTAATCCGGCTGATAATATTGAATTCGATGGAGAGACCGAAATTACACGACTGTACTGGGAAACGACATCTGAAGAAAATAGGATGAAAAGACGCCAAATAAACACGGAATCAAAAATTTTTGTCAAGGCAAGCCGTGAAATTTTGAATACATAAGTTGATGTTAGTAAATAACATTTCACTTGCTATTTCACGAGTCAGAGCTACCCCAAAGAGACATGTAGATATCAAAGCAGCAAACTTATAACCAATGAGCTCATGATAAATGAGGAAAGCACAAAGTTTTAGTACCTTAAAAAACCCCATATTTCATATACCGGTAAAATNTAT] [+] EMBL CD117876 [CCTGTCGATAGACGTTACAAGGTCCCCAACTTTTAATCCGGCTGATAATATTGAATTCGATGGAGAGACCGAAATTACACGACTGTACTGGGAAACGACATCTGAAGAAAATAGGATGAAAAGACGCCAAATAAACACGGAATCAAAAATTTTTGTCAAGGCAAGCCGTGAAATTTTGAATACATAAGTTGATGTTAGTAAATAACATTTCACTTGCTATTTCACGAGTCAGAGCTACCCCAAAGAGACATGTAGATATCAAAGCAGCAAACTTATAACCAATGAGCTCATGATAAATGAGGAAAGCACAAAGTTTTAGTACCTTAAAAAACCCCATATTTCATATACCGGTAAAATNTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10993#0 AGGGCCTTCAGAATGGAATGTATTGGGATGATGTCACAGGTGCTGAAGATCGCATAGAAG 60 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GATTCACATAACTTTTCTTCGTTCCTGGTCGATTTACTATTGATGGAGACATTTTTGTAG 120 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GACTTGGTGAAGATGTTGAACAAGGAAAGACTGATTCAGGTGTTCTATTTGTCTCCAAAT 180 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 CTGAATATGTAGTTGAAATATTCGGTTCAGAATTGATGGTGGGCTTTGTACACAAACACG 240 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 AGTCATCTCCATCCGATAATACAGGTGAAGGGACGTTTAAATTAGAGATTGTAAGCGTGG 300 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 ACACTACAGGAACATAAGGACTTCCAGTCATCCCCATTCCAACATATGGTTGTGGAGAAC 360 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 AGTGCATTCGAATCAAACTTGAAGGACTGTACACAGTCGAACCAGCTGCAGCTCGAGTAA 420 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 -------------------------------------CTGCATTATGGGAGGGCGCACGA 23 consensus_10993#0 CAATATTACCTGGTCCCAAACGAACTATATCTGTGGC-CGCTATGTTGTATGTAACATTT 479 consensus_10993#2 -AATATTACCTGGTCCCAAACGAACTATATCTGTGGC-CGCTATGCTGTATGTAACGTTT 58 consensus_10993#3 -------------------------CCTGTCGATAGA-CGTTACAAGGTCCCCAACTTTT 34 consensus_10993#1 TTCGAGTCTGTTTTCTGAGGATGTTTCGATGATTAGTTCGGATTATTGTCCATGACTTCT 83 * * * ** ** ** * * consensus_10993#0 GTAGAAGATAAAGATGGGGTATTCGTTGGACTAGGAACATTTGAACATGAAAAGAAAGAA 539 consensus_10993#2 GTAGAAGATAAAGATGGGGTATTCGTTGGACTAGGAACATTTGAACATGAAAAGAAAGAA 118 consensus_10993#3 AATCCGGCTGATAATATTGAATTCGATGGA------------GAGACCGAAATTACACGA 82 consensus_10993#1 TTATGAATTCA-AATGCCTAACGCA-TAAACCTTTCAGATCAAATATTTTAGGTACA--A 139 * * ** * * * * * * * * * consensus_10993#0 CTTGATTGGGAATGAGATGACA-CAGTATGTTTCACGTTGGTGGGAGACGTACAAGCAGA 598 consensus_10993#2 CTTGATTGGGAATGAGATGACA-CAGTATGTTTCACGTTGGTGGGAGACGTACAAGCAGA 177 consensus_10993#3 CTGTACTGGGAA----ACGACATCTGAAGAAAATAGGATGA--AAAGACGC-CAAATAAA 135 consensus_10993#1 TTTTGTAAATAATTTTACGACTCTAAAACAATGTTTCTCAATTTATGATGCTGTGATCAC 199 * ** * *** * ** * consensus_10993#0 TACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTT 658 consensus_10993#2 TACCGATTGATAAGGCTTGGTTGAAGGAATACTTTTTTCGACCGGGTTCGAATCCGAGTT 237 consensus_10993#3 CACGGAATCAAAAATTTTTGTC-AAGGCAAGCCGTGAAATTTTGAATACATAAGTTGATG 194 consensus_10993#1 AAGTGGCTTACCAACCT------AACAAATGAGACTAAAAAGCATGTGTGGATACCTCTT 253 * * * * * * ** * * * * consensus_10993#0 TTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCAC-CAACACGAGTCATT- 716 consensus_10993#2 TTCTGACACAAGATTTGGTGAACCAGTGGCGAAAACAAGTCCAC-CAACACGAGTCATT- 295 consensus_10993#3 TTAGTAAATAACATTTCACTTGCTATTTCACGAGTCAGAGCTAC-CCCAAAGAGACATG- 252 consensus_10993#1 TTTGT---TACATCTTCATTAAAAACTTAATGAGACCATGATATGCAGAAAATCTCATCC 310 ** * ** * * * * * * * *** consensus_10993#0 TGAGCAGCAAGGGA--AACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCAC 774 consensus_10993#2 TGAGCAGCAAGGGA--AACACGACTACTGTTAAGATGATGCCACGTGAGTAGGTTATCAC 353 consensus_10993#3 TAGATATCAAAGCAGCAAACTTATAACCAATGAGCTCATGATAAATGAGGAAAGCACAA- 311 consensus_10993#1 TAAATATCTAAATGGTGATTCGTATGTCAGGTTCTTTACCGAAATGGTGTAGATTATTTT 370 * * * * * * * * * * * * consensus_10993#0 GAGATGTGGTGCACTGCGATAGACGAGGATTGCAATGAGCAGTATGGGTAGGAGAAATAG 834 consensus_10993#2 GAGATGTGGTGCACTGCGATAGACGANNNTGTCTGCCNCT-------------------- 393 consensus_10993#3 -AGTTTTAGTACCTTAAAAAACCCCATATTTCATATACCGGTAAAATNTAT--------- 361 consensus_10993#1 CATTATTTCTCATTTAAAGTATGGTAGATTCGGCTTTAAAGGTAGTTGTTGGTGATGGAG 430 * * * * * * * consensus_10993#0 GAACATGTGATTGGTCATGCGCAGCAGTTGTACCGGGACTTCGAACAAGGTTAACAGATT 894 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 -AGTTTGTTCTTGACGAACCAGATGTCGTTTCCCAGTACAGTCGTGTAATTTCGGTCTCT 489 consensus_10993#0 GGCTAGAACTATAGCATACAGGTCTTCTAGTCCCTCGTGGAGAAACACGACAAACGTGAG 954 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 CCATCGAATTCAATATTATCAGCCGGATTAAAAGTTGGGGACC----------------- 532 consensus_10993#0 GGTAAGGAGAAGTAGGATGAGTGGTTGAAAAGTTCGTATTCCTTGAGTGTGAAAATCTGT 1014 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 AGTTGGGATCTGGTACCAAACGTTTCTGATTACAGCTGGTGGATGATTGATATAAATAGT 1074 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GCCCAAGTTGATTAGTTTCTGAAGATCCTATTTGAAGCAGTTGATCAGTTGTAAGCCCAC 1134 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 CATCGATAGCTAGTCTTGCAACTGCACCTAATTGAGACTCGCATGAACCAATAACAGGAG 1194 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 AACAGGTAGAAGTGTGCTTTGGTTTGTAATTTATTTGCGGACTAGGTTTTTCGAGGGAGC 1254 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 TGTTCTTTACATTAACATTGCGTTGTGACTTCGCAGTGTCTGGAAATGAGTGATATGCCT 1314 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GTCTATGTATTATTCGCANATTCTCATGTTCTGATTTGTCTGATGAGAGTTCAGTAACTT 1374 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 TATTTATTGTTTGACAAATTGTTTTGTTACCAACTTCTACTGGGAAGGAACAACATATTT 1434 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 CACCACCATTATCTATCACTTTCAGTTTCAGTTCACCGGAACTGGTAGAGTCATTAATTA 1494 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 AAGACTTCAATTCATCGAGTTTTAGTCCACTAGTAGGGATCCTGTCGATAGACGTTACAA 1554 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GGTCCCCAACTTTTAATCCGGCTGATAATATTGAATTCGATGGAGAGACCGAAATTACAC 1614 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GACTGTACTGGGAAACGACATATGACTGATTAATCTCGGGAATATTCTTAGCAAAGGCGT 1674 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 CTTAAATATAACGGACGTTTGCGCTTTTATAAATTAAACGCAGTGTTCTGCGAGACGGGA 1734 consensus_10993#2 ------------------------------------------------------------ consensus_10993#3 ------------------------------------------------------------ consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 TTATTTCAGCCAT 1747 consensus_10993#2 ------------- consensus_10993#3 ------------- consensus_10993#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||