These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 2154 fasta sequence [TTTTTTATTTTTTTTTTTTTAATGGATAAACGTTACTATTCACATGATAGAATACATGAAATGTGAATATAAACTGGTAATTAATACAGATTTAAGTCGTTTAGTATCAAATTTTATCAAGGTTACACATATCATACAAACCGGACATTTAAAAATAAATCTCATTACAATTATTATAGTTTTGAAAATCTCTTGTGGCTGATACAGAACTTTCTTTCAACTGCTCAAAATTGAAGAAAAGAACAATGAATTAAAACCTTGTTTGAACGAATCACATTTCTGCTTAATAATACGCGATCACAATATAATATAAATATGTACACTTGTTTACAATGAGGTGTCTTTACGACGTGATTAGTAATGAGACTTTTTATGTTTTTTCTTGGACTTTGTTGAATGATGATCGTCCCGATCTCTTGGGTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC-TCGACGACGTTTCATGTTAGCAACTACA--GCATGAGCAACAGCT-GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC-GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGT-CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCCTTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTTTACGTCTTTCTTCACGCAGACGCTCTTCTTTAGCTGTAGGGACCGCAACCTGATAACCATCGGCAGAGAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGAATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGACGATTCCGAAGAAGACGATGAGCTAGGACTGGGAATAC-CAGGTATGACGCACATT-TTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA-ATGACTTATTAAGTTGTTCGTTAGCTC-GTCTTGCACTTTTGGAAACAGATTCTGAGTACTCTAGTGCAGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTTTTGACGAATGACCAATTCTTCAAATTCTAAGCCATTACGAACAACATATTCTGCCATTTTATTTATAATACCACGTTGTTCATCACTAAGTGGAGGCTCGAACATGACTGGAGCACTAGCTTTTAAACGTGTTTGTTGGACAACATTGACTGCAGCCGCAGCTGCTATAGCGGCTGCCTTAGCTGCTTCTTGTACAATATTGAAACTTTCATCGTTGACATGTTCAGGCAAAGCCCACTGGTTAGAATAATGTGTGTAATAATGAGCATAGTAGTGTTTATAATACTCCTGGTAAATACGCTCATACTCTTCTGGAGATAAAGGATCTACTAATTCTGAAATCATATTGTC-TTCCC-ACGACTG--ACGTCAGCAAGGCTTTCGTTAGTTGTGGAAACGTCGGCTTGAACTTCAGATTGTGGT] [+] EMBL AI394839 [TTTTTTATTTTTTTTTTTTTAATGGATAAACGTTACTATTCACATGATAGAATACATGAAATGTGAATATAAACTGGTAATTAATACAGATTTAAGTCGTTTAGTATCAAATTTTATCAAGGTTACACATATCATACAAACCGGACATTTAAAAATAAATCTCATTACAATTATTATAGTTTTGAAAATCTCTTGTGGCTGATACAGAACTTTCTTTCAACTGCTCAAAATTGAAGAAAAGAACAATGAATTAAAACCTTGTTTGAACGAATCACATTTCTGCTTAATAATACGCGATCACAATATAATATAAATATGTACACTTGTTTACAATGAGGTGTCTTTACGACGTGATTAGTAATGAGACTTTTTATGTTTTTTCTTGGACTTTGTTGAATGATGATCGTCTCGATCTCTTGGGTCCTCACGATCATAAGAATCACATCc ] [-] EMBL CD080579 [ ATAATACGCGATCACAATATAATATAAATATGTACACTTGTTTACAATGAGGTGTCTNTACGACGTGATTAGTAATGAGACTTTTTATGTTTTTTCTTGGACTNTGTTGAATGATGATCGTCCCGATCTCTTGGGTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGT CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCCTTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTTTACGTCTTTCTTCACGCAGACGCTCTTCTTTAGCTGTAGGGACCGCAACCTGATAACCATCGGCAGAGAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTT AA TAGATATCGACTCCACAGG ] [+] EMBL CD137450 [ TATGTACACTTGTTTACAATGAGGTGTCTTTACGACGTGATTAGTAATGAGACTTTTTATGTTTTTTCTTGGACTTTGTTGAATGATGATCGTCCCGATCTCTTGGGTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGACGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGT CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCCTTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTTTACGTCTTTCTTCACGCAGACGCTCTTC ] [-] EMBL CD083765 [ cTGGNTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGACGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTCTTCGACGACGTTTCATGTTAGCAACTACAAGGCATGAGCAACAGCTAGCAGGGACTGAATCAGGAGCTGGTGGAGGTGACAGAACGATACCGATCAGACGTCGTTGATGTGGTAATAACAGT CGAAGATTTGGGGACAGTTGT ] [+] EMBL CD090785 [ CGATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGT CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTCCCTTTTGTGATAGAATTATTTAACTTCAACTGGGCAACCAATTGGGCATCTCTTTCACGTCT ] [-] EMBL CD120685 [ GATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTC ] [-] EMBL CD120611 [ GATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTC ] [-] EMBL CD196886 [ TGTGTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGTACGAAGATTTGGGGACAGTTGTACTGGTAT ] [+] EMBL CD165247 [ TCAGACGTCGTTGATGTGGTAATAACTGT CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCCTTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTCTACGTCTTTCTTCACGCAGACGCTCTTCTTTAGCTGTAGGGACCGCAACCTGATAACCATCGGCAGAGAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGT ] [-] EMBL CD166406 [ ATCGGCAGAGAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGAATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGACGATTCCGAAGAAGACGATGAGCTAGGACTGGGAATAC CAGGTATGACGCACATT TTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA ATGACTTATTAAGTTGTTCGT ] [+] EMBL CD112879 [ GTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGAATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGACGATTCCGAAGAAGACGATGAGCTAGGACTGGGAATAC CAGGTATGACGCACATT TTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA ATGACTTATTAAGTTGTTCGTTAGCTC GTCTTGCACTTTTGGAAACAGATTCTGAGTACTCTAGTGCAGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTCTCTGTATTTTGAGTGGACTGAGACTTTGA ] [+] EMBL CD117186 [ ACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGAATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGACGATTCCGAAGAAGACGATGAGCTAGGACTGGGAATAC CAGGTATGACGCACATT TTTGGAGATCGAGTTTTC ] [-] EMBL CD061336 [ ATACACAGGTATGACGCACATTGTTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCATATGACTTATTAAGTTGTTCGTTAGCTCAGTC TGCACTa ] [+] EMBL CD200677 [ TATGACGCACATT TTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA ATGACTTATTAAGTTGTTCGTTAGCTC GTCTTGCACTTTTGGAAACAGATTCTGAGTACTCTAGTGCAGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTTTTGACGAATGACCAATTCTTCANATTCTAAGCCATTGCGAACAACA ] [+] EMBL CD124714 [ TCGAACGACTCA ATGACTTATTAAGTTGTTCGTTAGCTC GTCTTGCACTTTTGGAAACAGATTCTGAGTACTCTAGTGCAGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAAT ] [-] EMBL CD165145 [ AGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAGTTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAA ] [+] EMBL CD146367 [ AATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATC ] [-] EMBL CD165082 [ TCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTNTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAA ] [+] EMBL CD130316 [ GTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGA ] [-] EMBL CD069479 [ TTGTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTTTTGACGAATGACCAATTCTTCAAATTCTAAGCCATTACGTACAACATATTCTGCCATTTTATTTATAATACCACGTTGTTCATCACTAAGTGGAGGCTCGAACATGACTGGAGCACTAGCTTTTAAACGTGTTTGTTGGACAACATTGACTGCAGCCGCAGCTGCTATAGCGGCTGCCTTAGCTGCTTCTTGTACAATATTGAAACTTTCATCGTTGACATGTTCAGGCAAAGCCCACTGGTTAGAATAATGTGTGTAATAATGAGCATAGTAGTGTTTATAATACTCCTGGTAAATACGCTCATACTCTTCTGGAGATAAAGGATCTACTAATTCTGAAATCATATTGTC TTCCC ACGACTG ACGTC ] [+] EMBL CD061732 [ TTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATC TTGCTTTTTTGACGAATGACCAATTCTTCAAATTCTAAGCCATTACGAACAACATATTCTGCCATTTTATTTATAATACCACGTTGTTCATCACTAAGTGGAGGCTCGAACATGACTGGAGCACTAGCTTTTAAACGTGTTTGTTGGACAACATTGACTGCAGCCGCAGCTGCTATAGCGGCTGCCTTAGCTGCTTCTTGTACAATATTGAAACTTTCATCGTTGACATGTTCAGGCAAAGCCCACTGGTTAGAATAATGTGTGTAATAATGAGCATAGTAGTGTTTATAATACTCCTGGTAAATACGCTCATACTCTTCTGGAGATAAAGGATCTACTAATTCTGAAATCATATTGTCTTTCCCAACGACTGGAACGTCAGCAAGGCTTTCGTTAGTTGTGGAAACGTCGGCTTGAACTTCAGATTGTGGT] consensusID : consensus_10996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 784 fasta sequence [TAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTAAGAACTATTTCCATTTGACTTCCTTGTCGAGAGACGAAAACAGCAGTTTTTTCAATAATGTGAGCTTGTTTATCGGATTCCGGAAGTTGGAAATTCGACAAAAGTTGTTGTAGCTCAGGAGGACAATTATATGGCTCTTCAGAGTGCTGTTCAGTTGACCCCTTGTTAACATATGATTCGTCGCCATTTCGTTGGGAAACATTTTCATCGTAAGAAAAGCTAACGGCTCCATAGTCATTGCGAGATCGTTCAGCTTCACGTNTCCGAGCTTCTTATTGAAAGTATGCTTATTCCCATAGNCTCATCAGGCTCGAATTGCATGTCCCACTCCAAAAAACAACCATCTTGAATTGCGAGTTCATGGATGTCCACTTGCATTTCCAAATAACGTTCGAAATCACACATCTTTTCTATTGCAATCTCTTCTTCAGACAATTGATCGTCAGGACTTAAGTCGCAATTAGGATCTCCCTCATAAATATCAGTGAGATACCCACGTCCATCGAACCTATCAATCAAAATTGATGTGTCACCACACCATGGTATCAATAGTTTTTCTCCATCAACTTCACAAGCTTTTTCCCGATCATCAAACAAGGTACAGCTTGTACCTTCTACCAGAAAATGTTTCTCTTCGCTACAGTCATTCATCTTAGTCGG] [+] EMBL CD089686 [TAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTAAGAACTATTTCCATTTGACTTCCTTGTCGAGAGACGAAAACAGCAGTTTTTTCAATAATGTGAGCTTGTTTATCGGATTCCGGAAGTTGGAAATTCGACAAAAGTTGTTGTAGCTCAGGAGGACAATTATATGGCTCTTCAGAGTGCTGTTCAGTTGACCCCTTGTTAACATATGATTCGTCGCCATTTCGTTGGGAAACATTTTCATCGTAAGAAAAGCTAACGGCTCCATAGTCATTGCGAGATCGTTCAGCTTCACGTNTCCGAGCTTCTTATTGAAAGTATGCTTATTCCCATAGNCTCATCAGGCTCG ] [-] EMBL CD096008 [ GCTCTTCAGAGTGCTGTTCAGTTGACNCCTTGTTAACATATGATTCGTCGCCATTTCGTTGGGAAACATNTTCATCGTAAGAAAAGCTAACGGCTCCATAGTCATTGCGAGATCGTTCAGCTTCACGTTTCCGAGCTTCTTATTGAAAGTATGCTTATTCCCATAGCCTCATCAGGCTCGAATTGCATGTCCCACTCCAAAAAACAACCATCTTGAATTGCGAGTTCATGGATGTCCACTTGCATTTCCAAATAACGTTCGAAATCACACATCTTTTCTATTGCAATCTCTTCTTCAGACAATTGATCGTCAGGACTTAAGTCGCAATTAGGATCTCCCTCATAAATATCAGTGAGATACCCACGTCCATCGAACCTATCAATCAAAATTGATGTGTCACCACACCATGGTATCAATAGTTTTTCTCCATCAACTTCACAAGCTTTTTCCCGATCATCAAACAAGGTACAGCTTGTACCTTCTACCAGAAAATGTTTCTCTTCGCTACAGTCATTCATCTTAGTCGG] consensusID : consensus_10996#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence [AACTCGCAATTCAAGATGAAGAAGCTCGGAAACGTGAAGCTGAACGATCTCGCAATGACTATGGAGCCGTTAGCTTTTCTTACGATGAAAATGTTTCCCAACGAAATGGCGACGAATCATATGTTAACAAGGGGTCAACTGAACAGCACTCTGAAGAGCCATATAATTGTCCTCCTGAGCTACAGCAACTTTTGTCGAATTTCCAACTTCCGGAATCCGATAAACAAGCTCACATTATTGAAAAAACTGCTGTTTTCGTCTCTCGACAAGGAAGTCAAATGGAAATAGTTCTTAAAGCTAAACAAAATAAAAATCCATTATTTGGCTTTTTGACTTATGACCATCCACTTAATCCCTTCTACAAGGAGATTGTGAGGTTAATTTCCCAAGGTCGTTACGTTCCGAAACCTCGTCAGACTGCAGATAAACCAGCTGGGACACTCTTTACAAGTGCAGATGAGTCAAGCCAGTCAATCCATGAAGATGTTTACGAATTGAAGCTACCAAAGGTGGATATTTCAAATACATCATATGCTCCACTAATATCCAAGTTCAAGAAAATTAATGAAATGGCTGCAGCTGTCGCAGCAGCAAATCGTGTTATCCCTGTTTCTGATGTCCAGTCTTCTGTCGCTACTCCTGAGGCATTGACAGAAACAGAACGTCTTCTTTACGATCCTAGTGAGATCGACA] [-] EMBL CD194543 [AACTCGCAATTCAAGATGAAGAAGCTCGGAAACGTGAAGCTGAACGATCTCGCAATGACTATGGAGCCGTTAGCTTTTCTTACGATGAAAATGTTTCCCAACGAAATGGCGACGAATCATATGTTAACAAGGGGTCAACTGAACAGCACTCTGAAGAGCCATATAATTGTCCTCCTGAGCTACAGCAACTTTTGTCGAATTTCCAACTTCCGGAATCCGATAAACAAGCTCACATTATTGAAAAAACTGCTGTTTTCGTCTCTCGACAAGGAAGTCAAATGGAAATAGTTCTTAAAGCTAAACAAAATAAAAATCCATTATTTGGCTTTTTGACTTATGACCATCCACTTAATCCCTTCTACAAGGAGATTGTGAGGTTAATTTCCCAAGGTCGTTACGTTCCGAAACCTCGTCAGACTGCAGATAAACCAGCTGGGACACTCTTTACAAGTGCAGATGAGTCAAGCCAGTCAATCCATGAAGATGTTTACGAATTGAAGCTACCAAAGGTGGATATTTCAAATACATCATA ] [+] EMBL CD130358 [ GACACTCTTTACAAGTGCAGATGAGTCAAACAAGTCAATCCATGAAGATGTTTACGAATTGAAGCTACCAAAGGTGGATATTTCAAATACATCATATGCTCCACTAATATCCAAGTTCAAGAAAATTAATGAAATGGCTGCAGCTGTCGCAGCAGCAAATCGTGTTATCCCTGTTTCTGATGTCCAGTCTTCTGTCGCTACTCCTGAGGCATTGACAGAAACAGAACGTCTTCTTTACGATCCTAGTGAGATCGACA] consensusID : consensus_10996#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [GGCTTCTTCAGTACTGCAGTGATCTAATTCCCCAAATTATTACCCTTTTTCTCAATTTTGTGGCCAACTGGCTTTTATTTCGCTACCTTCAGGTTCGATGGACGTGGGTATCTCACTGATATTTATGAGGGAGATCCTAATTGCGACTTAAGTCCTGACGATCAATTGTCTGAAGAAGAGATTGCAATAGAAAAGATGTGTGATTTCGAACGTTATTTGGAAATGCAAGTGGACGTCCATGAACTCGCAATTCAAGATGGTGAGTTTACTTTTGTATTTGTGTATTGATGTATTCTGCAATACCACCCTTGCTGATTGTTAATGTGATCTTAGCTTTTGAGTCAACACATCTTTGGTAAACGCATGTTGACAACTTCGTCCTACGTGGTTGTTTTTTGGAGTGGGACATGCAATTCGAGCCTGATGAGGCTATGGGAATAAGCA] [+] EMBL CD190544 [GGCTTCTTCAGTACTGCAGTGATCTAATTCCCCAAATTATTACCCTTTTTCTCAATTTTGTGGCCAACTGGCTTTTATTTCGCTACCTTCAGGTTCGATGGACGTGGGTATCTCACTGATATTTATGAGGGAGATCCTAATTGCGACTTAAGTCCTGACGATCAATTGTCTGAAGAAGAGATTGCAATAGAAAAGATGTGTGATTTCGAACGTTATTTGGAAATGCAAGTGGACGTCCATGAACTCGCAATTCAAGATGGTGAGTTTACTTTTGTATTTGTGTATTGATGTATTCTGCAATACCACCCTTGCTGATTGTTAATGTGATCTTAGCTTTTGAGTCAACACATCTTTGGTAAACGCATGTTGACAACTTCGTCCTACGTGGTTGTTTTTTGGAGTGGGACATGCAATTCGAGCCTGATGAGGCTATGGGAATAAGCA] consensusID : consensus_10996#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [AATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGGGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCT] [+] EMBL CD089809 [AATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGGGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10996#0 TTTTTTATTTTTTTTTTTTTAATGGATAAACGTTACTATTCACATGATAGAATACATGAA 60 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 ATGTGAATATAAACTGGTAATTAATACAGATTTAAGTCGTTTAGTATCAAATTTTATCAA 120 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 GGTTACACATATCATACAAACCGGACATTTAAAAATAAATCTCATTACAATTATTATAGT 180 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 TTTGAAAATCTCTTGTGGCTGATACAGAACTTTCTTTCAACTGCTCAAAATTGAAGAAAA 240 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 GAACAATGAATTAAAACCTTGTTTGAACGAATCACATTTCTGCTTAATAATACGCGATCA 300 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 CAATATAATATAAATATGTACACTTGTTTACAATGAGGTGTCTTTACGACGTGATTAGTA 360 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 ATGAGACTTTTTATGTTTTTTCTTGGACTTTGTTGAATGATGATCGTCCCGATCTCTTGG 420 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 GTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGA 480 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 GATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGATGCCTTTTACGAGC 540 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 TTTGTTTTCGATTTCCAAAGCTTCTCGACGACGTTTCATGTTAGCAACTACAGCATGAGC 600 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 AACAGCTGCAGGGACTGAATCAGGAGCTGGTGGAGGTGACGAACGATACCGATCAGACGT 660 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 CGTTGATGTGGTAATAACTGTCGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCC 720 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 TTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTTTACGTCT 780 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 TTCTTCACGCAGACGCTCTTCTTTAGCTGTAGGGACCGCAACCTGATAACCATCGGCAGA 840 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 GAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGG 900 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 CCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTT 960 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 ATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCAC 1020 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 TGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGA 1080 consensus_10996#1 --------------------------------------------------TAAAATTAGA 10 consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ----------------------------GGCTTCTTCAGTACTGCAGTGATCTAATTC-- 30 consensus_10996#2 -----------------------------AACTCGCAATTCAAGATGAAGAAGCTCGGAA 31 consensus_10996#0 ATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGA 1140 consensus_10996#1 ATCGGCAGCTTTAGTCAAGCTAT---CATCAGGATCTAGTTCTTTCCGTTTAGAC--ATG 65 consensus_10996#4 ----------------------------------------------------------AA 2 consensus_10996#3 -CCCAAATTATTACCCTTTTTCTCAATTTTGTGGCCAACTGGCTTTTATTTCGCTACCTT 89 consensus_10996#2 ACGTGAAGCTGAACGATCTCGCAATGACTATGGAGCCGTTAGCTTTTCTTACGATGAAAA 91 consensus_10996#0 CGATTCCGAAGAAGACGATGAGCTAGGAC-TGGGAATACCAGGT--ATGACGCACATTTT 1197 consensus_10996#1 TAATATGAATGTAAAGGATGATCTGATTT-CAGAAATCCAAATC--GTGG-ATCTTTGCT 121 consensus_10996#4 TCACATCTA-GGAGTTGGTGACCTCCTTG-GAGATCTGTCAGGG--ATTAAGAATCACAT 58 consensus_10996#3 CAGGTTCGATGGACGTGGGTATCTCACTGATATTTATGAGGGAG--ATCCTAATTGCGAC 147 consensus_10996#2 TGTTTCCCAACGAAATGGCGACGAATCATATGTTAACAAGGGGTCAACTGAACAGCACTC 151 * * * * consensus_10996#0 TGGAGATCGA-GTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA 1256 consensus_10996#1 TTAAGAACTA-TTTCCATTTGACTTCCTTGTCGAGAGACGAAAACA--GCAGTTTTTTCA 178 consensus_10996#4 CTAGGAGTTG-GTGACCTCCTTGGAGATCTGTCAGAGATTAAGA-------ATCACATCT 110 consensus_10996#3 TTAAGTCCTG-ACGATCAATTGTCTGAAG---AAGAGATTGCAATA----GAAAAGATGT 199 consensus_10996#2 TGAAGAGCCATATAATTGTCCTCCTGAGCTACAGCAACTTTTGTCGAATTTCCAACTTCC 211 * * consensus_10996#0 ATGACTTATTAAGTTGTTCGTTAGC-----TCGTC----TTGC-ACTTTTGGAAACAGAT 1306 consensus_10996#1 ATAA--TGTGAGCTTGTTTATCGGA-----TTCCGGAAGTTGG-AAATTCGACAAAAGTT 230 consensus_10996#4 AGGAGTTGGTGACCTCCTTGGAGAT-----CTGTCAGAGATTA-AGAATCACATCTAGGA 164 consensus_10996#3 GTGATTTCGAACGTTATTTGGAAATGCAAGTGGACGTCCATGA-ACTCGCAATTCAAGAT 258 consensus_10996#2 GGAATCCGATAAACAAGCTCACATTA----TTGAAAAAACTGCTGTTTTCGTCTCTCGAC 267 * * * consensus_10996#0 TCTGA--GTACTCTAGTGCAGCGGCTTCAATTATGTCCAT--AATTTCTCCCGCCGAAGT 1362 consensus_10996#1 GTTG----TAGCTCAGGAGGACAATTATATGGCTCTTCAG--AGTGCTGTTCAGTTGACC 284 consensus_10996#4 GTTGG--TGACCTCCTTGGAGATCTGTCAGAGAT--TAAG--AATCACATCTA--GGAGT 216 consensus_10996#3 GGTGAGTTTACTTTTGTATTTGTGTATTGATGTATTCTGC--AATACCACCCTTGCTGAT 316 consensus_10996#2 AAGGAAGTCAAATGGAAATAGTTCTTAAAGCTAAACAAAATAAAAATCCATTATTTGGCT 327 * * * consensus_10996#0 TTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCG--AAAACTG 1420 consensus_10996#1 CCTTGT-TAACATATGATTCGTCGCCATTTCGTTGGGAAACATTTTCATCGTAAGAAAAG 343 consensus_10996#4 TGGTGACCTCC-------TTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGG 269 consensus_10996#3 TGTTAATGTGATCTTAGCTTTTGAGTCAACACATCTTTGGTAAACGCATGTTGACAACTT 376 consensus_10996#2 TTTTGACTTATGACCATCCACTTAATCCCTTCTACAAGGAGATTGTGAGGTT--AATTTC 385 * * consensus_10996#0 ATACCCGTTTGACGTTCTGAATTAC--AAGTTTCAAAATCATCTTTCTTGTCCTTATGAG 1478 consensus_10996#1 CTAACGGCTCCATAGTCATTGCGAG--ATCGTTCAGCTTCACGTNTCCGAGCTTCTT--- 398 consensus_10996#4 TGACCTCCTTGGAGATCT------------------------------------------ 287 consensus_10996#3 CGTCCTACGTGGTTGTTTTTTGGAGTGGGACATGCAATTCGAGCCTGATGAGGCTATGGG 436 consensus_10996#2 CCAAGGTCGTTACGTTCCGAAACCTCGTCAGACTGCAGATAAACCAGCTGGGACACTCTT 445 * consensus_10996#0 AATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTG 1538 consensus_10996#1 -ATTGAAAGTATGCTTATTCCCA---TAGNCTCATCAGGCTCGAATTGCATGTCCCACTC 454 consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 AATAAGCA---------------------------------------------------- 444 consensus_10996#2 TACAAGTGCAGATGAGTCAAGCCAGTCAATCCATGAAGATGTTTACGAATTGAAGCTACC 505 consensus_10996#0 TTTCAGGCTTTTCAATTGAATC-CAATTTTTTTGACGA--GCTTACTTT---AGATGATT 1592 consensus_10996#1 CAAAAAACAACCATCTTGAATTGCGAGTTCATGGATGTCCACTTGCATTTCCAAATAACG 514 consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 AAAGGTGGATATTTCAAATACATCATATGCTCCACTAATATCCAAGTTCAAGAAAATTAA 565 consensus_10996#0 TTGAAGGAGAAATATTACTAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGAT 1652 consensus_10996#1 TTCGAAATCACACATCTTTTCTATTGCAATCT-CTTCTTCAGACAATTGATCGTCAGGAC 573 consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 TGAAATGGCTGCAGCTGTCGCAGCAGCAAATCGTGTTATCCCTGTTTCTGATGTCCAGTC 625 consensus_10996#0 CTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATC 1712 consensus_10996#1 TTAAGTCG--CAATTAGGATCTCCCTCATAAATATCAGTGAGATACCCACGTCC---ATC 628 consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 TTCTGTCGCTACTCCTGAGGCATTGACAGAAACAGAACGTCTTCTTTACGATCCT--AGT 683 consensus_10996#0 CAAATCGTGGATCTTTGCTTTTTTGACGAATGACCAATTCTTCAAATTCTAAGCCATTAC 1772 consensus_10996#1 GAACCTATCAATCAAAA-----TTGATGTGTCACCACACCATGGTATCAATAGTTTTTCT 683 consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 GAGATCGACA-------------------------------------------------- 693 consensus_10996#0 GAACAACATATTCTGCCATTTTATTTATAATACCACGTTGTTCATCACTAAGTGGAGGCT 1832 consensus_10996#1 CCATCAACTTCACAAGCTTTTTCCCGATCATCAAACAAGGTACAGCTTGTACCTTCTACC 743 consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 CGAACATGACTGGAGCACTAGCTTTTAAACGTGTTTGTTGGACAACATTGACTGCAGCCG 1892 consensus_10996#1 AGAAAATGTTTCTCTTCGCTACAGTCATTCATCTTAGTCGG------------------- 784 consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 CAGCTGCTATAGCGGCTGCCTTAGCTGCTTCTTGTACAATATTGAAACTTTCATCGTTGA 1952 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 CATGTTCAGGCAAAGCCCACTGGTTAGAATAATGTGTGTAATAATGAGCATAGTAGTGTT 2012 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 TATAATACTCCTGGTAAATACGCTCATACTCTTCTGGAGATAAAGGATCTACTAATTCTG 2072 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 AAATCATATTGTCTTCCCACGACTGACGTCAGCAAGGCTTTCGTTAGTTGTGGAAACGTC 2132 consensus_10996#1 ------------------------------------------------------------ consensus_10996#4 ------------------------------------------------------------ consensus_10996#3 ------------------------------------------------------------ consensus_10996#2 ------------------------------------------------------------ consensus_10996#0 GGCTTGAACTTCAGATTGTGGT 2154 consensus_10996#1 ---------------------- consensus_10996#4 ---------------------- consensus_10996#3 ---------------------- consensus_10996#2 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||