|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1504 fasta sequence
[GAAAATTATTTATT-GTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGACCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCATCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA-GTGAAGTCTGTACTAGAACGACGAAGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGTTGTCGGCAGATTTTAATGAGCGAAAATTTATGAAATTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAAGGCATGATATACATTTAACATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGCGGTTTTCTTGGAGTCGGCAGGGCGTACAAAACATTGAGGTACTGATAACATTGAAGTGATGCTCAGAATTTCATTTGAACAGTTGTAATCGCAAGAGGCAATAACCATTTTGGCTAATTGGGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGGTATCATAAAATATGCAGATTTCTAGACTATGTATATTACAATACTAGACTGAGAAGTGTTGGCAAAAATAGACTATAGTGACCAATATTTGTAGAAATCAGTGTACAAAAATTCATTTAGTGTAGTGTTAATAAGTGACATTCTAATTGGACGGACGGTGTACAAGATACAACTCTTATCCCCCATTTTAATTACACTCGTAATCCTTTAATAATTACAAAAATTGATTCATTTTACCTAAATTTTGAGACAAA]
[+] EMBL CD074415 [GAAAATTATTTATT GTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGACCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCATCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA GTGAAGTC ]
[+] EMBL CD073240 [GAAAATTATTTATT GTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGACCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCATCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA GTGAAGTCTGTACTAGAACGACGAAGA ]
[+] EMBL CD076119 [ ATTATTTATTGGTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGACCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCATCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA GTGAAGTCTGTACTAGAACGACGAAGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGT ]
[+] EMBL CD142328 [ GGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAAACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATT ]
[-] EMBL CD080505 [ GGAGCGATACGCACAAGCCAATCTGG TTTACTTCAGTCACTGTACGTATATAATTCTNTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA GTGAAGTCTGTACTAGAACGACGAAGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGTTGTCGGCAGATTTTAATGAGCGAAAATTTATGAAATTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAAGGCATGATATACATTTAGCATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGCGGTTTTCTTGGAGTCGGCAGGGCGTACAAAACATTGAGGTACTGATAACATTGAAGTGATGCTCAGAATTTCATTTGAACAGTTGTAATCGCAAGAGGCAATAACCATTTTGGCTAATTGGGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACT ]
[+] EMBL CD157985 [ CCCGAGAATGTGAAGTCTGTACTAGAACGACGATGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGCTGTCGGCAGATTTTAATGAGCGAAAATTTATGAAGTTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAAGGCATGATATACATTTAACATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGCGG TTTCTTGGAGTC ]
[+] EMBL CD157904 [ CCCGAGAG GTGAAGTCTGTACTAGAACGACGAAGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGTTGTCGGCAGATTTTAATGAGCGAAATTTTATGAAATTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAA ]
[-] EMBL CD078780 [ TCTTCATGA TNTGTTNGAAGGCATGATATACATTTAACATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGCGGTTTTCTTGGAGTCGGCAGGGCGTACAAAACATTGAGGTACTGATAACATTGAAGTGATGCTCAGAATTTCATTTGAACAGTTGTAATCGCAAGAGGCAATAACCATTTTGGCTAATTGGGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGGTATCATAAAATATGCAGATTTCTA ]
[-] EMBL CD082524 [ GGCAATAACCATTTTGGCTAA TGGGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGGTATCATAAAATATGCAGATTTCTAGACTATGTATATTACAATACTAGACTGAGAAGTGTTGGCAAAAATAGACTATAGTGACCAATATTTGTAGAAATCAGTGTACAAAAATTCATTTAGTGTAGTGTTAATAAGTGACATTCTAATTGGACGGACGGTGTACAAGATACAACTCTTATCCCCCATTTTAATTACACTCGTAATCCTTTAATAATTACAAAAATTGATTCATTTTACCTAAATTTTGAGACAAA]
consensusID : consensus_10997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 663 fasta sequence
[ATTTTGGCTAATTGGGGATCAAGTGGGAACTCTGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCGGGAGGATCCATAAAGTCAAAATGCACCAAATCATCAATCCCCAGCTTTTTCAACTGGAGGACAACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGTATATGCCTTCTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCCGGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAATACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAACCACTCCATCAATTGTGAGGGATGTCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCCATTTGCACGTTTTGGAGGAGGAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCACTACTTCTCTCTGGATNACGTTGCATGCTTTCTCAATCTCCTCTTGTCCCGTCAGAACAGAAA]
[+] EMBL CD140607 [ATTTTGGCTAATTGGGGATCAAGTGGGAACTCTGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCGGGAGGATCCATAAAGTCAAAATGCACCAAATCATCAATCCCCAGCTTTTTCAACTGGAGGACAACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGTATATGCCTTCTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCCGGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAATACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAAACACTCCATCAATTGTGAG ]
[-] EMBL CD140430 [ GGGAGGATCCATAAAGTCAAAATGCACCAAATCATCAATCCCCAGCTTTTTCAACTGGAGGACAACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGTATATGCCTTTTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCCGGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAATACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAACCACTCCATCAATTGTGAGGGATGTCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCCATTTGCACGTTTTGGAGGAGGAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCA ]
[-] EMBL CD140503 [ CATCAATCCCCAGCTTTTTCAACTGGAGGACAACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGTATATGCCTTCTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCCGGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAATACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAACCACTCCATCAATTGTGAGGGATGTCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCCATTTGCACGTTTTGGAGGAGGAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCA ]
[+] EMBL CD158206 [ GGGATATCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCCATTTGCACGTTTTGGAGGAGGAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACATCTACTTCTCTCTGGATNACGTTGCATGCTTTCTCAATCTCCTCTTGTCCCGTCAGAACAGAAA]
consensusID : consensus_10997#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 570 fasta sequence
[AATTGATATCGGTGAATCTAAGCCCAGACGGTCAAGGTTTTCTGATGGACCAGGTAATCACTCACGTGATCGCTCGCGCTCCCCAGATAATCAGGTCAAACCTAAACAGAATGCTTCAAATAAGTCTCCAATCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCGAACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAACATTATCGGAGAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGACCCAAATTCCTCAATGGTGCCTGGAATGGGTAACTGGACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTAT]
[+] EMBL CD098369 [AATTGATATCGGTGAATCTAAGCCCAGACGGTCAAGGTTTTCTGATGGACCAGGTAATCACTCACGTGATCGCTCGCGCTCCCCAGATAATCAGGTCAAACCTAAACAGAATGCTTCAAATAAGTCTCCAATCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCGAACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAACATTATCGGAGAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGACCCAAATTCCTCAATGGTGCCTGGAA ]
[+] EMBL CD119583 [ ACCGTCTAGGTTTTCTGATGGACCAGGTAATCACTCACGTGATCGCTCGCGCTCCCCAGATAATCAGGTCAAACCTAAACAGAATGCTTCAAATAAGTCTCCATTCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCGAACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAACATTATCGGAGAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGACCCAAATTCCTCAATGGTGCCTGG ]
[+] EMBL CD118528 [ CACTCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCGAACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAACATTATCGGATAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGACCCAAATTCCTCAATGGTGCCTGGAATGGGTAACTGGACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTAT]
consensusID : consensus_10997#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[TCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGCTCTGGAGTATAAAATATCTCCACTGGATGAGTTCTACCGGGCACGGTCATAAGAGGTGCTTTGTGAAAGTAATCCTGGGTCATTTCGAAAAGGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCA]
[-] EMBL CD140618 [TCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGCTCTGGAGTATAAAATATCTCCACTGGATGAGTTCTACCGGGCACGGTCATAAGAGGTGCTTTGTGAAAGTAATCCTGGGTCATTTCGAAAAGGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCA]
consensusID : consensus_10997#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 437 fasta sequence
[ACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTCATGAGTGCGACTTTGGACGCTGGAAAATTTCAAATCTTAAAAGTATTTGTTTAGTTAAATGTATCCTAGTTGTATCACATTTTATTTGGAGTTGGATGAAGCCATC]
[+] EMBL CD198544 [ACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTCATGAGTGCGACTTTGGACGCTGGAAAATTTCAAATCTTAAAAGTATTTGTTTAGTTAAATGTATCCTAGTTGTATCACATTTTATTTGGAGTTGGATGAAGCCATC]
[+] EMBL CD198561 [ACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTCATGAGTGCGACTTTGGACGCTGGAAAATTTCCAATCTTAAAAGTATTTGTTTAGTT ]
[+] EMBL CD198529 [ACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAGATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTCATGAGTGCGACTTTGGACGCTGGAAAATTT ]
[-] EMBL CD199431 [ GGGTCGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGCATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATGCGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ]
[-] EMBL CD199440 [ ggtncGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTTGAGGATTGCACGTCCTCAAGGACCGTGATGAAATATATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ]
[+] EMBL CD096500 [ GTTGCTCAACGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAATGGGACACACTATTCGATTCTAGGATTGCACGTCCTCAAGGACCGCGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGGTATTCTTTTGGACGAACCCCACGAAAGAACCTTGGGTACTGATATTTTAATGGGGCTACTTAAAGAAATCACAAAGCACAGATTAGATTTAAAAATAG ]
[-] EMBL CD147249 [ TTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAGATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ]
[-] EMBL CD199388 [ tcGCTCAGCGTGTATCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATGCGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ]
[-] EMBL CD199447 [ tgaCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATGCGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ]
consensusID : consensus_10997#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 412 fasta sequence
[TCACCAACGTCCGGGCCC-AACCATCTACTTCTCTCTGGATACGTTTGCATGCTTCTTCAATCTCCTCTTGTCCCGTCAGAAACAGTAATATGTCACCCTCGATCTCTTCGCACATATGAATCTGGATT-ACAGTACGGATAGCCGCTTCGAGATAATCACGTTCTGGCTCTGGAGTATAAAATATCTCCACTGGATGAGTTCTACCGGGCACGGTCATAAGAGGTGCTTTGTGAAAGTAATCTTGAAATTTTCCAGCGTCCAAAGTCGCACTCATGACAACTATTTTTAAATCTAATCTTTGCTTTGTGATTTCTTTAAGTAGACCCATTAAAATATCAGTAGCCAAGGTTCTTTCGTGGGCTTCGTCCAAAAGAATAACACCGTATGCCTCGAGCAAAGGATCAGACATGCC]
[+] EMBL CD198500 [TCACCAACGTCCGGGCCC AACCATCTACTTCTCTCTGGATACGTTTGCATGCTTCTTCAATCTCCTCTTGTCCCGTCAGAAACAGTAATATGTCACCCTCGATCTCTTCGCACATATGAATCTGGATT ACAGTACGGATAGCCGCTTCGAGATAATCACGTTCTGGCTCTGGAGTATAAAATATCTCCACTGGATGAGTTCTACCGGGCACGGTCATAAGAGGTGCTTTGTGAAAGTAATCTTGAAATTTTCCAGCGTCCAAAGTCGCACTCATGACAACTATTTTTAAATCTAATCTTTGCTTTGTGATTTCTTTAAGTAGACCCATTAAAATATCAGTAGCCAAGGTTCTTTCGTGGGCTTCGTCCAAAAGAATAACACCGTATGCCTCGAGCAAAGGATCAGACATGCC]
[+] EMBL CD142393 [TCACCAACGTCCGGGCCCAAACCATCTACTTCTCTCCGGATACGTTTGCATGCTTCTTCAATCTCCTCTTGGCCCGTCAGAAACAGCAATATGTCACCCTCGATCTCTTCGCACATATGAATCTGGATTGACAGTACGGATAGCCGCTTCGAGATAATCACGTTCTGACTCTGGAGTAT AAATATCTCCACTGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10997#0 GAAAATTATTTATTGTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGA 60
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 CCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCA 120
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 TCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGA 180
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 TCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACG 240
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 ATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATT 300
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 AGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCAC 360
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 TGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTT 420
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 GTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATA 480
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 GTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCG 540
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 AATGTTGATGTAATAATCCCGAGAAGTGAAGTCTGTACTAGAACGACGAAGAGAAAATCG 600
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 ATCCATAATACGCGATAATTGTACCCGAACGTTGTCGGCAGATTTTAATGAGCGAAAATT 660
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 TATGAAATTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAAGGCATGATATAC 720
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 -------------------------------------------------------AATTG 5
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 ATTTAACATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGC 780
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 ATATCGGTGAATCTAAGCCCAGACGGTCAAGGTTTTCTGATGGACCAGGTAATCACTCAC 65
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 GGTTTTCTTGGAGTCGGCAGGGCGTACAAAACATTGAGGTACTGATAACATTGAAGTGAT 840
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 GTGATCGCTCGCGCTCCCCAGATAATCAGGTCAAACCTAAACAGAATGCTTCAAATAAGT 125
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ------------------------------------------------------------
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 GCTCAGAATTTCATTTGAACAGTTGTAATCGCAAGAGGCAATAACCATTTTGGCTAATTG 900
consensus_10997#3 ------------------------------------------------------------
consensus_10997#2 CTCCAATCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCG 185
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 ----------------------------------------------ATTTTGGCTAATTG 14
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 GGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATC 960
consensus_10997#3 ----------------------------------------------------TCATCATC 8
consensus_10997#2 AACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAA 245
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 GGGATCAAGTGGGAACTCTGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATC 74
consensus_10997#5 -------------------------------------------------------TCACC 5
consensus_10997#0 AAGGGCTG--CCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTA-- 1016
consensus_10997#3 AAGGGCTG--CCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTA-- 64
consensus_10997#2 CATTATCG--GAGAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGAC 303
consensus_10997#4 ------------------------------------------------------------
consensus_10997#1 AAGGGCTG--CCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCGGGA 132
consensus_10997#5 AACGTCCGGGCCCAACCATCTACTTCTCTCTGGATACGTTTGCATGCTTCTTCAATCTCC 65
consensus_10997#0 TTAT--ATTCAACAAAAACTCATGATAAGAAAAAT----GGCATTGTAAACTTTTGGTGA 1070
consensus_10997#3 TTAT--ATTCAACAAAAACTCATGATAAGAAAAAT----GGCATTGTAAACTTTTGGTGA 118
consensus_10997#2 CCAA--ATTCCTCAATGGTGCCTGGAATGGGTAAC----TGGACGGTATCCGACCAAAAA 357
consensus_10997#4 ------------------------------------------ACGGTATCCGACCAAAAA 18
consensus_10997#1 GGATCCATAAAGTCAAAATGCACCAAATCATCAATCCCCAGCTTTTTCAACTGGAGG-AC 191
consensus_10997#5 TCTT--GTCCCGTCAGAAACAGTAATATG-TCACCCTCGATCTCTTCGCACATATGAATC 122
*
consensus_10997#0 AACAATGA-TTAAATTAGCGACAGAAA----AGAGCTGAGTCTTTCTGTTTCACAACTGT 1125
consensus_10997#3 AACAATGA-TTAAATTAGCGACAGAAA----AGAGCTGAGTCTTTCTGTTTCACAACTGT 173
consensus_10997#2 GGCAGTGGCTTGCACTCAGCCTAGACG----GGTAGCAGCTATGTCTGTTGCTCAGCG-- 411
consensus_10997#4 GGCAGTGGCTTGCACTCAGCCTAGACG----GGTAGCAGCTATGTCTGTTGCTCAGCG-- 72
consensus_10997#1 AACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGT 251
consensus_10997#5 TGGATTAC--AGTACGGATAGCCGCTT--CGAGATAATCACGTTCTGGCTCTGGAGTATA 178
* * * * * *
consensus_10997#0 ---TATTTACACCGAAGCT--TCTAAA-----TACTAAGT--GGAAAGAGAAATTTTATT 1173
consensus_10997#3 ---TATTTACACCGAAGCT--TCTAAA-----TACTAAGT--GGAAAGAGAAATTTTATT 221
consensus_10997#2 ---TGTTTCCGAGGAAA------TGGA-----TGTTGAAC--TTGGTCAAGAAGTGGGAT 455
consensus_10997#4 ---TGTTTCCGAGGAAA------TGGA-----TGTTGAAC--TTGGTCAAGAAGTGGGAT 116
consensus_10997#1 ATATGCCTTCTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCC 311
consensus_10997#5 AAATATCTCCACTGGATGAGTTCTACCG----GGCACGGT--CATAAGAGGTGCTTTGTG 232
* * * * * *
consensus_10997#0 AGCAAAACTCTAT-----AACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGT 1228
consensus_10997#3 AGCAAAACTCTAT-----AACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGT 276
consensus_10997#2 A-CAGTATTCGATTC---GAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACT 511
consensus_10997#4 A-CAGTATTCGATTC---GAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACT 172
consensus_10997#1 GGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAAT 371
consensus_10997#5 AAAGTAATCTTGA-----AATTTTCCAGCGTCCAAAGTCGCACTCATGACAACTATTTTT 287
* * *
consensus_10997#0 A-GCGCAAAATCTACCTTCTGGGTATC-----ATAAAATATGCAG-ATTTCTAGACTATG 1281
consensus_10997#3 A-GCGCAAAATCTACCTTCTGGCT--------CTGGAGTATAAAATATCTCCACTGGATG 327
consensus_10997#2 G-ATG----GTATGCTTTTACGTG----------AAGGCATGTCTGATCCTT--TGCTCG 554
consensus_10997#4 G-ATG----GTATGCTTTTACGTG----------AAGGCATGTCTGATCCTT--TGCTCG 215
consensus_10997#1 ACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAACCACTCCATC 431
consensus_10997#5 AAATCTAATCTTTGCTTTGTGATTTCTTTAA-GTAGACCCATTAAAATATCAGTAGCCAA 346
* * ** *
consensus_10997#0 TATATTACAATACTAGAC--TGAGAA--GTG-TTGGCAAAAATAGACTATAGTGACCAAT 1336
consensus_10997#3 AGTTCTACCGGGCACGGTCATAAGAG--GTGCTTTGTGAAAGTAATCCTGGGTCATTTCG 385
consensus_10997#2 AGGCATACGGTGTTAT-------------------------------------------- 570
consensus_10997#4 AGGCATACGGTGTTATTCTTTTGGAC--GAAGCCCACGAAAG--AACCTTGGCTACTGAT 271
consensus_10997#1 AATTGTGAGGGATGTCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCC 491
consensus_10997#5 GGTTCTTTCGTGGGCTTCGTCCAAAAGAATA-ACACCGTATGCCTCGAGCAAAGGATCAG 405
*
consensus_10997#0 ATTTGTAGAAATCAGTGTACAAAAATTCATTTAGTGTAGTGTTAATAAGTGACATTCTAA 1396
consensus_10997#3 AAAAGGGAAGGGTAGAGTAGAGAGG-------AATGCAACGGAGTTCACCAACGTCCGGG 438
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTC 331
consensus_10997#1 ATTTGCACGTTTTGGAGGAG-GAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGG 550
consensus_10997#5 ACATGCC----------------------------------------------------- 412
consensus_10997#0 TTGGACGGACGGTGTACAAGATACAACTCTTATCCCCCATTTTAATTACACTCGTAATCC 1456
consensus_10997#3 CCCAAACCA--------------------------------------------------- 447
consensus_10997#2 ------------------------------------------------------------
consensus_10997#4 ATGAGTGCGACTTTGGACGCTGGAAAATTTCAAATCTTAAAAGTATTTGTTTAGTTAAAT 391
consensus_10997#1 TAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCACTACTTCTCT 610
consensus_10997#5 ------------------------------------------------------------
consensus_10997#0 TTTAATAATTACAAAAATTGATTCATTTTACCTAAATTTTGAGACAAA----- 1504
consensus_10997#3 -----------------------------------------------------
consensus_10997#2 -----------------------------------------------------
consensus_10997#4 GTATCCTAGTTGTATCACATTTTATTTGGAGTTGGATGAAGCCATC------- 437
consensus_10997#1 CTGGATNACGTTGCATGCTTTCTCAATCTCCTCTTGTCCCGTCAGAACAGAAA 663
consensus_10997#5 -----------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||