These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1504 fasta sequence [GAAAATTATTTATT-GTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGACCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCATCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA-GTGAAGTCTGTACTAGAACGACGAAGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGTTGTCGGCAGATTTTAATGAGCGAAAATTTATGAAATTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAAGGCATGATATACATTTAACATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGCGGTTTTCTTGGAGTCGGCAGGGCGTACAAAACATTGAGGTACTGATAACATTGAAGTGATGCTCAGAATTTCATTTGAACAGTTGTAATCGCAAGAGGCAATAACCATTTTGGCTAATTGGGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGGTATCATAAAATATGCAGATTTCTAGACTATGTATATTACAATACTAGACTGAGAAGTGTTGGCAAAAATAGACTATAGTGACCAATATTTGTAGAAATCAGTGTACAAAAATTCATTTAGTGTAGTGTTAATAAGTGACATTCTAATTGGACGGACGGTGTACAAGATACAACTCTTATCCCCCATTTTAATTACACTCGTAATCCTTTAATAATTACAAAAATTGATTCATTTTACCTAAATTTTGAGACAAA] [+] EMBL CD074415 [GAAAATTATTTATT GTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGACCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCATCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA GTGAAGTC ] [+] EMBL CD073240 [GAAAATTATTTATT GTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGACCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCATCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA GTGAAGTCTGTACTAGAACGACGAAGA ] [+] EMBL CD076119 [ ATTATTTATTGGTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGACCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCATCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA GTGAAGTCTGTACTAGAACGACGAAGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGT ] [+] EMBL CD142328 [ GGATCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACGATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATTAAACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCACTGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATT ] [-] EMBL CD080505 [ GGAGCGATACGCACAAGCCAATCTGG TTTACTTCAGTCACTGTACGTATATAATTCTNTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTTGTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATAGTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCGAATGTTGATGTAATAATCCCGAGAA GTGAAGTCTGTACTAGAACGACGAAGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGTTGTCGGCAGATTTTAATGAGCGAAAATTTATGAAATTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAAGGCATGATATACATTTAGCATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGCGGTTTTCTTGGAGTCGGCAGGGCGTACAAAACATTGAGGTACTGATAACATTGAAGTGATGCTCAGAATTTCATTTGAACAGTTGTAATCGCAAGAGGCAATAACCATTTTGGCTAATTGGGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACT ] [+] EMBL CD157985 [ CCCGAGAATGTGAAGTCTGTACTAGAACGACGATGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGCTGTCGGCAGATTTTAATGAGCGAAAATTTATGAAGTTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAAGGCATGATATACATTTAACATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGCGG TTTCTTGGAGTC ] [+] EMBL CD157904 [ CCCGAGAG GTGAAGTCTGTACTAGAACGACGAAGAGAAAATCGATCCATAATACGCGATAATTGTACCCGAACGTTGTCGGCAGATTTTAATGAGCGAAATTTTATGAAATTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAA ] [-] EMBL CD078780 [ TCTTCATGA TNTGTTNGAAGGCATGATATACATTTAACATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGCGGTTTTCTTGGAGTCGGCAGGGCGTACAAAACATTGAGGTACTGATAACATTGAAGTGATGCTCAGAATTTCATTTGAACAGTTGTAATCGCAAGAGGCAATAACCATTTTGGCTAATTGGGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGGTATCATAAAATATGCAGATTTCTA ] [-] EMBL CD082524 [ GGCAATAACCATTTTGGCTAA TGGGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGGTATCATAAAATATGCAGATTTCTAGACTATGTATATTACAATACTAGACTGAGAAGTGTTGGCAAAAATAGACTATAGTGACCAATATTTGTAGAAATCAGTGTACAAAAATTCATTTAGTGTAGTGTTAATAAGTGACATTCTAATTGGACGGACGGTGTACAAGATACAACTCTTATCCCCCATTTTAATTACACTCGTAATCCTTTAATAATTACAAAAATTGATTCATTTTACCTAAATTTTGAGACAAA] consensusID : consensus_10997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 663 fasta sequence [ATTTTGGCTAATTGGGGATCAAGTGGGAACTCTGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCGGGAGGATCCATAAAGTCAAAATGCACCAAATCATCAATCCCCAGCTTTTTCAACTGGAGGACAACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGTATATGCCTTCTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCCGGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAATACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAACCACTCCATCAATTGTGAGGGATGTCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCCATTTGCACGTTTTGGAGGAGGAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCACTACTTCTCTCTGGATNACGTTGCATGCTTTCTCAATCTCCTCTTGTCCCGTCAGAACAGAAA] [+] EMBL CD140607 [ATTTTGGCTAATTGGGGATCAAGTGGGAACTCTGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCGGGAGGATCCATAAAGTCAAAATGCACCAAATCATCAATCCCCAGCTTTTTCAACTGGAGGACAACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGTATATGCCTTCTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCCGGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAATACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAAACACTCCATCAATTGTGAG ] [-] EMBL CD140430 [ GGGAGGATCCATAAAGTCAAAATGCACCAAATCATCAATCCCCAGCTTTTTCAACTGGAGGACAACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGTATATGCCTTTTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCCGGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAATACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAACCACTCCATCAATTGTGAGGGATGTCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCCATTTGCACGTTTTGGAGGAGGAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCA ] [-] EMBL CD140503 [ CATCAATCCCCAGCTTTTTCAACTGGAGGACAACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGTATATGCCTTCTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCCGGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAATACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAACCACTCCATCAATTGTGAGGGATGTCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCCATTTGCACGTTTTGGAGGAGGAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCA ] [+] EMBL CD158206 [ GGGATATCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCCATTTGCACGTTTTGGAGGAGGAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACATCTACTTCTCTCTGGATNACGTTGCATGCTTTCTCAATCTCCTCTTGTCCCGTCAGAACAGAAA] consensusID : consensus_10997#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 570 fasta sequence [AATTGATATCGGTGAATCTAAGCCCAGACGGTCAAGGTTTTCTGATGGACCAGGTAATCACTCACGTGATCGCTCGCGCTCCCCAGATAATCAGGTCAAACCTAAACAGAATGCTTCAAATAAGTCTCCAATCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCGAACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAACATTATCGGAGAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGACCCAAATTCCTCAATGGTGCCTGGAATGGGTAACTGGACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTAT] [+] EMBL CD098369 [AATTGATATCGGTGAATCTAAGCCCAGACGGTCAAGGTTTTCTGATGGACCAGGTAATCACTCACGTGATCGCTCGCGCTCCCCAGATAATCAGGTCAAACCTAAACAGAATGCTTCAAATAAGTCTCCAATCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCGAACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAACATTATCGGAGAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGACCCAAATTCCTCAATGGTGCCTGGAA ] [+] EMBL CD119583 [ ACCGTCTAGGTTTTCTGATGGACCAGGTAATCACTCACGTGATCGCTCGCGCTCCCCAGATAATCAGGTCAAACCTAAACAGAATGCTTCAAATAAGTCTCCATTCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCGAACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAACATTATCGGAGAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGACCCAAATTCCTCAATGGTGCCTGG ] [+] EMBL CD118528 [ CACTCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCGAACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAACATTATCGGATAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGACCCAAATTCCTCAATGGTGCCTGGAATGGGTAACTGGACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTAT] consensusID : consensus_10997#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [TCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGCTCTGGAGTATAAAATATCTCCACTGGATGAGTTCTACCGGGCACGGTCATAAGAGGTGCTTTGTGAAAGTAATCCTGGGTCATTTCGAAAAGGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCA] [-] EMBL CD140618 [TCATCATCAAGGGCTGCCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTATTATATTCAACAAAAACTCATGATAAGAAAAATGGCATTGTAAACTTTTGGTGAAACAATGATTAAATTAGCGACAGAAAAGAGCTGAGTCTTTCTGTTTCACAACTGTTATTTACACCGAAGCTTCTAAATACTAAGTGGAAAGAGAAATTTTATTAGCAAAACTCTATAACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGTAGCGCAAAATCTACCTTCTGGCTCTGGAGTATAAAATATCTCCACTGGATGAGTTCTACCGGGCACGGTCATAAGAGGTGCTTTGTGAAAGTAATCCTGGGTCATTTCGAAAAGGGAAGGGTAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCA] consensusID : consensus_10997#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 437 fasta sequence [ACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTCATGAGTGCGACTTTGGACGCTGGAAAATTTCAAATCTTAAAAGTATTTGTTTAGTTAAATGTATCCTAGTTGTATCACATTTTATTTGGAGTTGGATGAAGCCATC] [+] EMBL CD198544 [ACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTCATGAGTGCGACTTTGGACGCTGGAAAATTTCAAATCTTAAAAGTATTTGTTTAGTTAAATGTATCCTAGTTGTATCACATTTTATTTGGAGTTGGATGAAGCCATC] [+] EMBL CD198561 [ACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTCATGAGTGCGACTTTGGACGCTGGAAAATTTCCAATCTTAAAAGTATTTGTTTAGTT ] [+] EMBL CD198529 [ACGGTATCCGACCAAAAAGGCAGTGGCTTGCACTCAGCCTAGACGGGTAGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAGATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTCATGAGTGCGACTTTGGACGCTGGAAAATTT ] [-] EMBL CD199431 [ GGGTCGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGCATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATGCGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ] [-] EMBL CD199440 [ ggtncGCAGCTATGTCTGTTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTTGAGGATTGCACGTCCTCAAGGACCGTGATGAAATATATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ] [+] EMBL CD096500 [ GTTGCTCAACGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAATGGGACACACTATTCGATTCTAGGATTGCACGTCCTCAAGGACCGCGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGGTATTCTTTTGGACGAACCCCACGAAAGAACCTTGGGTACTGATATTTTAATGGGGCTACTTAAAGAAATCACAAAGCACAGATTAGATTTAAAAATAG ] [-] EMBL CD147249 [ TTGCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAGATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATACGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ] [-] EMBL CD199388 [ tcGCTCAGCGTGTATCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATGCGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ] [-] EMBL CD199447 [ tgaCTCAGCGTGTTTCCGAGGAAATGGATGTTGAACTTGGTCAAGAAGTGGGATACAGTATTCGATTCGAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACTGATGGTATGCTTTTACGTGAAGGCATGTCTGATCCTTTGCTCGAGGCATGCGGTGTTATTCTTTTGGACGAAGCCCACGAAAGAACCTTGGCTACTGATATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGT ] consensusID : consensus_10997#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 412 fasta sequence [TCACCAACGTCCGGGCCC-AACCATCTACTTCTCTCTGGATACGTTTGCATGCTTCTTCAATCTCCTCTTGTCCCGTCAGAAACAGTAATATGTCACCCTCGATCTCTTCGCACATATGAATCTGGATT-ACAGTACGGATAGCCGCTTCGAGATAATCACGTTCTGGCTCTGGAGTATAAAATATCTCCACTGGATGAGTTCTACCGGGCACGGTCATAAGAGGTGCTTTGTGAAAGTAATCTTGAAATTTTCCAGCGTCCAAAGTCGCACTCATGACAACTATTTTTAAATCTAATCTTTGCTTTGTGATTTCTTTAAGTAGACCCATTAAAATATCAGTAGCCAAGGTTCTTTCGTGGGCTTCGTCCAAAAGAATAACACCGTATGCCTCGAGCAAAGGATCAGACATGCC] [+] EMBL CD198500 [TCACCAACGTCCGGGCCC AACCATCTACTTCTCTCTGGATACGTTTGCATGCTTCTTCAATCTCCTCTTGTCCCGTCAGAAACAGTAATATGTCACCCTCGATCTCTTCGCACATATGAATCTGGATT ACAGTACGGATAGCCGCTTCGAGATAATCACGTTCTGGCTCTGGAGTATAAAATATCTCCACTGGATGAGTTCTACCGGGCACGGTCATAAGAGGTGCTTTGTGAAAGTAATCTTGAAATTTTCCAGCGTCCAAAGTCGCACTCATGACAACTATTTTTAAATCTAATCTTTGCTTTGTGATTTCTTTAAGTAGACCCATTAAAATATCAGTAGCCAAGGTTCTTTCGTGGGCTTCGTCCAAAAGAATAACACCGTATGCCTCGAGCAAAGGATCAGACATGCC] [+] EMBL CD142393 [TCACCAACGTCCGGGCCCAAACCATCTACTTCTCTCCGGATACGTTTGCATGCTTCTTCAATCTCCTCTTGGCCCGTCAGAAACAGCAATATGTCACCCTCGATCTCTTCGCACATATGAATCTGGATTGACAGTACGGATAGCCGCTTCGAGATAATCACGTTCTGACTCTGGAGTAT AAATATCTCCACTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10997#0 GAAAATTATTTATTGTTGCCTTGATAAAATATACACAACAGCACTTGAAATGCGGGGTGA 60 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 CCTCTTTCATTGAATGTGGTAATTCAGAGGAAGTATATAAAAAAAATACAAGGATGGTCA 120 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 TCGATACTTCACATCTTATAAATTAAGAGTAGTGGTGATATCTGAATGTATGAATATGGA 180 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 TCAAGTTTGTGCTTGTAATTTCGGCTCTTGGTTTTGTTTTTGCTCTTGTTGAAGTTTACG 240 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 ATTTTGAATCCTGTGAACAATTCGTTCAAGTATCCGTCGAGCATCACAATCAGGGAAATT 300 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 AGACATATCATAATATTGAGGAGCGATACGCACAAGCCAATCTGGTTTTACTTCAGTCAC 360 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 TGTACGTATATAATTCTTTGTTGTAAGGACGAACTCATTGTATAACACCCATTCCGGTTT 420 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 GTGATCCATTACTGTAGAGGGGTGAAGCTGGACCACTTGATTGTCTTTTACAGTTAAATA 480 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 GTGTCCAGTACGTTCAAGATGAGCAACCTGCATGAAAAAACCAGATACTAAAGCTTTTCG 540 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 AATGTTGATGTAATAATCCCGAGAAGTGAAGTCTGTACTAGAACGACGAAGAGAAAATCG 600 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 ATCCATAATACGCGATAATTGTACCCGAACGTTGTCGGCAGATTTTAATGAGCGAAAATT 660 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 TATGAAATTATCGTAACACCACTGTGGATCTTCATGATTTTGTTTGAAGGCATGATATAC 720 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 -------------------------------------------------------AATTG 5 consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 ATTTAACATAGTTAAGTGGTCACCATCAATGTGAGCGAAACGCATTTTGGCTTCGTCTGC 780 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 ATATCGGTGAATCTAAGCCCAGACGGTCAAGGTTTTCTGATGGACCAGGTAATCACTCAC 65 consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 GGTTTTCTTGGAGTCGGCAGGGCGTACAAAACATTGAGGTACTGATAACATTGAAGTGAT 840 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 GTGATCGCTCGCGCTCCCCAGATAATCAGGTCAAACCTAAACAGAATGCTTCAAATAAGT 125 consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ------------------------------------------------------------ consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 GCTCAGAATTTCATTTGAACAGTTGTAATCGCAAGAGGCAATAACCATTTTGGCTAATTG 900 consensus_10997#3 ------------------------------------------------------------ consensus_10997#2 CTCCAATCGCAGCACAAACAAATCCTTACAACGGCAAATCGTTTAGTGCCAAATACTTCG 185 consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 ----------------------------------------------ATTTTGGCTAATTG 14 consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 GGGATCAAGTGGGAACTCAGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATC 960 consensus_10997#3 ----------------------------------------------------TCATCATC 8 consensus_10997#2 AACTTCTCAGGAAGCGTATCAAATTGCCTGTTTGGGAATACAAAGAGAATTTTTTTCAAA 245 consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 GGGATCAAGTGGGAACTCTGCCATCATACTTCCTAGATCGGTTAGGTTACCATCATCATC 74 consensus_10997#5 -------------------------------------------------------TCACC 5 consensus_10997#0 AAGGGCTG--CCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTA-- 1016 consensus_10997#3 AAGGGCTG--CCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCTA-- 64 consensus_10997#2 CATTATCG--GAGAACCAAGTCACCGTTTTAGTTGGTGAGACAGGTTCTGGAAAAACGAC 303 consensus_10997#4 ------------------------------------------------------------ consensus_10997#1 AAGGGCTG--CCAAATAATTCAATAACTCTAGAGCACGCATCAGAGTTTCCGGAGCGGGA 132 consensus_10997#5 AACGTCCGGGCCCAACCATCTACTTCTCTCTGGATACGTTTGCATGCTTCTTCAATCTCC 65 consensus_10997#0 TTAT--ATTCAACAAAAACTCATGATAAGAAAAAT----GGCATTGTAAACTTTTGGTGA 1070 consensus_10997#3 TTAT--ATTCAACAAAAACTCATGATAAGAAAAAT----GGCATTGTAAACTTTTGGTGA 118 consensus_10997#2 CCAA--ATTCCTCAATGGTGCCTGGAATGGGTAAC----TGGACGGTATCCGACCAAAAA 357 consensus_10997#4 ------------------------------------------ACGGTATCCGACCAAAAA 18 consensus_10997#1 GGATCCATAAAGTCAAAATGCACCAAATCATCAATCCCCAGCTTTTTCAACTGGAGG-AC 191 consensus_10997#5 TCTT--GTCCCGTCAGAAACAGTAATATG-TCACCCTCGATCTCTTCGCACATATGAATC 122 * consensus_10997#0 AACAATGA-TTAAATTAGCGACAGAAA----AGAGCTGAGTCTTTCTGTTTCACAACTGT 1125 consensus_10997#3 AACAATGA-TTAAATTAGCGACAGAAA----AGAGCTGAGTCTTTCTGTTTCACAACTGT 173 consensus_10997#2 GGCAGTGGCTTGCACTCAGCCTAGACG----GGTAGCAGCTATGTCTGTTGCTCAGCG-- 411 consensus_10997#4 GGCAGTGGCTTGCACTCAGCCTAGACG----GGTAGCAGCTATGTCTGTTGCTCAGCG-- 72 consensus_10997#1 AACAGTACCCAGGTTTGATCGAAGAATTTCTGGATATGTGTTCTCTTGCATCTCATTTGT 251 consensus_10997#5 TGGATTAC--AGTACGGATAGCCGCTT--CGAGATAATCACGTTCTGGCTCTGGAGTATA 178 * * * * * * consensus_10997#0 ---TATTTACACCGAAGCT--TCTAAA-----TACTAAGT--GGAAAGAGAAATTTTATT 1173 consensus_10997#3 ---TATTTACACCGAAGCT--TCTAAA-----TACTAAGT--GGAAAGAGAAATTTTATT 221 consensus_10997#2 ---TGTTTCCGAGGAAA------TGGA-----TGTTGAAC--TTGGTCAAGAAGTGGGAT 455 consensus_10997#4 ---TGTTTCCGAGGAAA------TGGA-----TGTTGAAC--TTGGTCAAGAAGTGGGAT 116 consensus_10997#1 ATATGCCTTCTCTGTATACAATCTAAAACATTTTCCAGGTCTTGTACGCCCGGCCCTTCC 311 consensus_10997#5 AAATATCTCCACTGGATGAGTTCTACCG----GGCACGGT--CATAAGAGGTGCTTTGTG 232 * * * * * * consensus_10997#0 AGCAAAACTCTAT-----AACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGT 1228 consensus_10997#3 AGCAAAACTCTAT-----AACGCCGGTAAAACCAAAGATTTTGAAATGGTAAACCTTAGT 276 consensus_10997#2 A-CAGTATTCGATTC---GAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACT 511 consensus_10997#4 A-CAGTATTCGATTC---GAGGATTGCACGTCCTCAAGGACCGTGATGAAATACATGACT 172 consensus_10997#1 GGCACGTTGTTGTGCAGAAGCCTTGCTGATAGCAGTGACTAAGAGAGATTCAACACGAAT 371 consensus_10997#5 AAAGTAATCTTGA-----AATTTTCCAGCGTCCAAAGTCGCACTCATGACAACTATTTTT 287 * * * consensus_10997#0 A-GCGCAAAATCTACCTTCTGGGTATC-----ATAAAATATGCAG-ATTTCTAGACTATG 1281 consensus_10997#3 A-GCGCAAAATCTACCTTCTGGCT--------CTGGAGTATAAAATATCTCCACTGGATG 327 consensus_10997#2 G-ATG----GTATGCTTTTACGTG----------AAGGCATGTCTGATCCTT--TGCTCG 554 consensus_10997#4 G-ATG----GTATGCTTTTACGTG----------AAGGCATGTCTGATCCTT--TGCTCG 215 consensus_10997#1 ACGAGGATTGTAGACTTTTTGCTTTGCGAAACCTGGGTCAATAACAAAAACCACTCCATC 431 consensus_10997#5 AAATCTAATCTTTGCTTTGTGATTTCTTTAA-GTAGACCCATTAAAATATCAGTAGCCAA 346 * * ** * consensus_10997#0 TATATTACAATACTAGAC--TGAGAA--GTG-TTGGCAAAAATAGACTATAGTGACCAAT 1336 consensus_10997#3 AGTTCTACCGGGCACGGTCATAAGAG--GTGCTTTGTGAAAGTAATCCTGGGTCATTTCG 385 consensus_10997#2 AGGCATACGGTGTTAT-------------------------------------------- 570 consensus_10997#4 AGGCATACGGTGTTATTCTTTTGGAC--GAAGCCCACGAAAG--AACCTTGGCTACTGAT 271 consensus_10997#1 AATTGTGAGGGATGTCTCTGCAATATTTGTGGACACCACAACCTTTCGACCGACAGCCCC 491 consensus_10997#5 GGTTCTTTCGTGGGCTTCGTCCAAAAGAATA-ACACCGTATGCCTCGAGCAAAGGATCAG 405 * consensus_10997#0 ATTTGTAGAAATCAGTGTACAAAAATTCATTTAGTGTAGTGTTAATAAGTGACATTCTAA 1396 consensus_10997#3 AAAAGGGAAGGGTAGAGTAGAGAGG-------AATGCAACGGAGTTCACCAACGTCCGGG 438 consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ATTTTAATGGGTCTACTTAAAGAAATCACAAAGCAAAGATTAGATTTAAAAATAGTTGTC 331 consensus_10997#1 ATTTGCACGTTTTGGAGGAG-GAGATTCAAAAATTCTTTGTTGAAGATTTGGTGGAAGGG 550 consensus_10997#5 ACATGCC----------------------------------------------------- 412 consensus_10997#0 TTGGACGGACGGTGTACAAGATACAACTCTTATCCCCCATTTTAATTACACTCGTAATCC 1456 consensus_10997#3 CCCAAACCA--------------------------------------------------- 447 consensus_10997#2 ------------------------------------------------------------ consensus_10997#4 ATGAGTGCGACTTTGGACGCTGGAAAATTTCAAATCTTAAAAGTATTTGTTTAGTTAAAT 391 consensus_10997#1 TAGAGTAGAGAGGAATGCAACGGAGTTCACCAACGTCCGGGCCCAAACCACTACTTCTCT 610 consensus_10997#5 ------------------------------------------------------------ consensus_10997#0 TTTAATAATTACAAAAATTGATTCATTTTACCTAAATTTTGAGACAAA----- 1504 consensus_10997#3 ----------------------------------------------------- consensus_10997#2 ----------------------------------------------------- consensus_10997#4 GTATCCTAGTTGTATCACATTTTATTTGGAGTTGGATGAAGCCATC------- 437 consensus_10997#1 CTGGATNACGTTGCATGCTTTCTCAATCTCCTCTTGTCCCGTCAGAACAGAAA 663 consensus_10997#5 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||