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Schistosoma mansoni
cluster # 10999 cluster # 10999       Sequences # 28       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10999#0 length = 635 sequences # 23  
consensus_10999#1 length = 449 sequences # 2  
consensus_10999#2 length = 416 sequences # 2  
consensus_10999#3 length = 326 sequences # 1  

consensusID : consensus_10999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 23
consensus length = 635
fasta sequence
                              [AACTTGTTTCACATTATCAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA-GACTCGCACTGT-CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG-ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG-AACATCATCTTGTAATTTATAAATACANTGTGCTA]

[+] EMBL CD179692             [AACTTGTTTCACATTATCAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGTCCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTATATGGAAGACTTATTGGCGCCAACCCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD132938             [                  AGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCG TTGCA                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD135747             [                   GCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACGCCATACTTCGTTTTCTTCAA GATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG AACATCATCTTGTAATT                  ]
[+] EMBL CD092004             [                   GCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCGAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAG                                                                                               ]
[-] EMBL CD189240             [                   GCGTTACAACTCAGCGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAA                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD097248             [                   GCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATAT                                                                                                                                                                                               ]
[-] EMBL CD091982             [                    CGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGG                                                                                              ]
[+] EMBL AA559731             [                                            TGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAANATGAAAATGTGGATGATACGANCAAAAGGGTCNTTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAAT                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD121601             [                                                    ATCAT ATCCT TAT    ACACGATCA TGATGA GAAA    CAAACGAGGCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATT ATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGT                                                                                                                                                                            ]
[+] EMBL CD134571             [                                                         GATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCANGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG AACATCATCTTGTAAT                   ]
[+] EMBL AF358139             [                                                                TATAAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGCCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATG                                                                                           ]
[-] EMBL CD097218             [                                                                   AAGGATATGATCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTG                                                                                                                                               ]
[-] EMBL CD121545             [                                                                  cttatacacGATCA TGATGA GAAA    CAAACGAGGCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATT ATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGT                                                                                                                                                                            ]
[+] EMBL CD179821             [                                                                             TCACTGAGGATGAAATGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAG                                                                                               ]
[-] EMBL CD097258             [                                                                                            TGTTCACA GACTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTG                                                                                                                                               ]
[+] EMBL CD161543             [                                                                                                     ccCTCGCACTGT CCTCGTGTTGTCGCGGATTTCTTTTATGAAGACGACTCGAGGGTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAATATGAAAATGTGGATGATACTAGCAGAAGGGCCGATGATTTATTTCACGCTAATGGTTGCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGGTCCCTTACTTAAATCTCACGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGA                                                                                                                                              ]
[+] EMBL CD200248             [                                                                                                                                aGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTT                                                                                                                                                ]
[+] EMBL CD161904             [                                                                                                                                    TTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCATAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAACCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTNTCTTCAAG                                                                                               ]
[-] EMBL CD144924             [                                                                                                                                                                       TTCAAGTAATGTAGATGGAAGACTTATGGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGC                                                                 ]
[-] EMBL CD166104             [                                                                                                                                                                                                                                           TGGATGATACGAGCAAAGGNGTCATTGATNTAGTTCACGCTAATGGTNTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAGGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGG                                                                                                                               ]
[+] EMBL CD185852             [                                                                                                                                                                                                                                                     GAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTG ATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTT                                                                                                                                                 ]
[+] EMBL SM6211               [                                                                                                                                                                                                                                                                                                                                                                                                                                         CCTTGNATAACTTTGACCAATATGAGTTTTACATGGGTCCGCCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAAACATCATCTTGTAATTTATAAATACANTGTGCTA]
[+] EMBL SMAA43888            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG AACATCATCTTGTAATTTATAAATACAATGTGCTA]


>consensus_10999#0 AACTTGTTTCACATTATCAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGAT CGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGT TGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGA TGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGA TACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGA CCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCA AAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAA TGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGC CATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCGTTTTCTTCAA GGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATG AACATCATCTTGTAATTTATAAATACANTGTGCTA



consensusID : consensus_10999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 449
fasta sequence
                              [CAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAA-AAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAA-AGATCATACAAAGCGCATCTTAATAGCGTTTGCAAAAGACTGATTCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATTCTGATGCCATGATAG]

[+] EMBL CD097256             [CAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAA AAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAA AGATCATACAAAGCGCATCTTAATAGCGTTTGCAAAAGACTGATTCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATTCTGATGCCATGATAG]
[+] EMBL SM681                [                                             TGTATAAGGNTATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGNAGATGAAAATGTGGATGATACGAGCAACCAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAGTGATCATACANAGCGCATCTTAAgct                                                                                                                                        ]


>consensus_10999#1 CAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGATCGTGTATAAGGATATGA TCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTT ATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCG CCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCA TTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAGATCATACAAAG CGCATCTTAATAGCGTTTGCAAAAGACTGATTCAGACAAAGTTCCCTTACTTAAATCTCA GGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGG TCCGTCATCTAATTCTGATGCCATGATAG



consensusID : consensus_10999#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 416
fasta sequence
                              [CTCGAGGCANGATCGGCACGAGGTTTGTTTCTCATCATGATCGTGTATAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTT]

[+] EMBL CD084127             [CTCGAGGCANGATCGGCACGAGGTTTGTTTCTCATCATGATCGTGTATAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTT]
[+] EMBL CD132386             [                                                                   TGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCAACCCATCTGGCGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTGATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCA                                                                            ]


>consensus_10999#2 CTCGAGGCANGATCGGCACGAGGTTTGTTTCTCATCATGATCGTGTATAGGATATGATCA CTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGTTGTCGCGGATTTCTTTTATG AAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGATGGAAGACTTATTGGCGCCA ACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGATACGAGCAAAAGGGTCATTG ATTTAGTTCACGCTAATGGTTTCATTAGTGTTCCTTTCGACCAAAAATCATACAAAGCGC ATCTTAATCTGTATTTAAAAACTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAG TTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTT



consensusID : consensus_10999#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence
                              [AGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATTTTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTCCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATT]

[+] EMBL CD066657             [AGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATTTTATAATAGAGCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTCCGTTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATT]


>consensus_10999#3 AGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACATCATCTTGTAATTTTATAATAGA GCGTTTGCAAAAGACTGATCCAGACAAAGTTCCCTTACTTAAATCTCAGGTCAACAAGTA CATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTAA TCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTCCGT TTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTG GGATTCATGAACATCATCTTGTAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10999#1      -----------------CAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGAT 43
consensus_10999#2      ----------------CTCGAGGCANGA-TCGGCACGAG--GTTTGTTTCTCATCATGAT 41
consensus_10999#0      AACTTGTTTCACATTATCAGCGTTACAACTCAGTGCGCCTCGTTTGTTTCTCATCATGAT 60
consensus_10999#3      ------------------------------------------------------------
                                                                                   

consensus_10999#1      CGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGT 103
consensus_10999#2      CGTGTATA-GGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGT 100
consensus_10999#0      CGTGTATAAGGATATGATCACTGAGGATGAAATGTTCACAGACTCGCACTGTCCTCGTGT 120
consensus_10999#3      ----------------------AGGCGCTTCGTCTTCAGAATTTTGGGATTCATGAACAT 38
                                               *       * **** *   * *   *         *

consensus_10999#1      TGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGA 163
consensus_10999#2      TGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGA 160
consensus_10999#0      TGTCGCGGATTTCTTTTATGAAGTCGACTCGAGGTTTACGACAGTTTCAAGTAATGTAGA 180
consensus_10999#3      CATCTTGTAATTTTATAATAGAGCGTTTGCAA-----AAGACTGATCCAGACAAAGTTCC 93
                         **  * * ** * * **  **      * *     * *** * * **   ** **   

consensus_10999#1      TGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGA 223
consensus_10999#2      TGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGA 220
consensus_10999#0      TGGAAGACTTATTGGCGCCAACCCATCTGGTGAGGGTGGAGAAGATGAAAATGTGGATGA 240
consensus_10999#3      CTTACTTAAATCTCAGGTCAACAAGTACATGAAGAATGTCCTTGAT--AACTTTGACCAA 151
                          *        *   * ****   *      **  **     ***  ** * **    *

consensus_10999#1      TACGAGC---AAAAGGGTCATTGATTTAGTTC--ACGCTA--ATGGTTTCATTAGTGTTC 276
consensus_10999#2      TACGAGC---AAAAGGGTCATTGATTTAGTTC--ACGCTA--ATGGTTTCATTAGTGTTC 273
consensus_10999#0      TACGAGC---AAAAGGGTCATTGATTTAGTTC--ACGCTA--ATGGTTTCATTAGTGTTC 293
consensus_10999#3      TATGAGTTTTACATGGGTCCGTCATCTAATCCTGATGCCATGATAGTTTTGATGAATTTC 211
                       ** ***    * * *****  * ** ** * *  * ** *  ** ****   *    ***

consensus_10999#1      CTTTCGACCAAAGATCATACAAAGCGCATCTTAAT----------------------AGC 314
consensus_10999#2      CTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGC 333
consensus_10999#0      CTTTCGACCAAAAATCATACAAAGCGCATCTTAATCTGTATTTAAAAACTATAATAGAGC 353
consensus_10999#3      CGTGAGGACGGT-ATGACACCATACTCCGTTTTCT------------------------- 245
                       * *  *  *    ** * ** *  * *   **  *                         

consensus_10999#1      GTTTGCAAAAGACTGATTCAGACAAAGTTCCCT--TACTTAAATCTCAGGTCAACAAG-T 371
consensus_10999#2      GTTTGCAAAAGACTGATCCAGACAAAGTTCCCT--TACTTAAATCTCAGGTCAACAAG-T 390
consensus_10999#0      GTTTGCAAAAGACTGATCCAGACAAAGTTCCCT--TACTTAAATCTCAGGTCAACAAG-T 410
consensus_10999#3      -TCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTTGGGAT 304
                        *     *  ** * *  ***  *** *         ***     ****        * *

consensus_10999#1      ACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTA 431
consensus_10999#2      ACATGAAGAATGTCCTTGATAACTTT---------------------------------- 416
consensus_10999#0      ACATGAAGAATGTCCTTGATAACTTTGACCAATATGAGTTTTACATGGGTCCGTCATCTA 470
consensus_10999#3      TCATGAACATCATCTT--GTAATT------------------------------------ 326
                        ****** *   ** *   *** *                                    

consensus_10999#1      ATTCTGATGCCATGATAG------------------------------------------ 449
consensus_10999#2      ------------------------------------------------------------
consensus_10999#0      ATCCTGATGCCATGATAGTTTTGATGAATTTCCGTGAGGACGGTATGACACCATACTTCG 530
consensus_10999#3      ------------------------------------------------------------
                                                                                   

consensus_10999#1      ------------------------------------------------------------
consensus_10999#2      ------------------------------------------------------------
consensus_10999#0      TTTTCTTCAAGGATGGATTAACTCAGGAAAAATATTGAGGCGCTTCGTCTTCAGAATTTT 590
consensus_10999#3      ------------------------------------------------------------
                                                                                   

consensus_10999#1      ---------------------------------------------
consensus_10999#2      ---------------------------------------------
consensus_10999#0      GGGATTCATGAACATCATCTTGTAATTTATAAATACANTGTGCTA 635
consensus_10999#3      ---------------------------------------------
                                                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)