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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1130 fasta sequence
[AAAGCAGTCTAATTGAGTACAGATATTTTGCGAAAATATTGCGCACTAGATATGATTCCTTGTACATAATTTCTTATCTATGAACACATTACCCTGATTGAGACATAAAGGCCACGTAATCTATGTATACTTATTCGTCGTTAACTTTTTTCAGATAAGCGTTCATTGATTCATAAGACTTAAATGTGAAATGAAAATGCTTTGTCACTAAGGTGACGTGCAGTTTTATACTATATTTGAGGTGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC-AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAGCAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATA-GGTTTGGGAGCAGGAACAGGCATTG-GGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTAGGCCTCGAGCCGAGT]
[+] EMBL CD084194 [AAAGCAGTCTAATTGAGTACAGATATTTTGCGAAAATATTGCGCACTAGATATGATTCCTTGTACATAATTTCTTATCTATGAACACATTACCCTGATTGAGACATAAAGGCCACGTAATCTATGTATACTTATTCGTCGTTAACTTTTTTCAGATAAGCGTTCATTGATTCATAAGACTTAAATGTGAAATGAAAATGCTTTGTCACTAAGGTGACGTGCAGTTTTATACTATATTTGAGGTGTGCAATAAAAATTTAACTATTTAGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAACAAGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTCATGCTGACTG ]
[+] EMBL CD076945 [ TTTTATACTATATTTGAGGTGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGACCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTACCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAGCAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATAGGGTTTGGGAGCAGGAACAGGCATTGNGGAT ]
[+] EMBL CD074656 [ TACTATATTTGAGGGGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGGACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAACAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATA GGTTTGGGAGCAGGAACAGGCA ]
[+] EMBL BF936993 [ TACTATATTTGAGGTGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTT ]
[+] EMBL BF936673 [ AATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGT ]
[-] EMBL CD080733 [ AAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAACAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATA GGTTTGGGAGCAGGAACAGGCATTG GGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTAGGCCTCGAGCCGAGT]
[-] EMBL CD171564 [ GACTGTAATTTTGGTCATCACTTACAGCAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATA GGTTTGGGAGCAGGAACAGGCATTG GGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGCGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATG ]
consensusID : consensus_11014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1129 fasta sequence
[AGGCATTGGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCACCGGCG-CCTTGGA-CCATAA-CCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACTTTCTTTTTNGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCC-TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACTGTAGTC-AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCCTGGTAATCATTGTTTAAACCATAGCATCATGCAACAAATCACAAGAGTAAAAC]
[+] EMBL CD200717 [AGGCATTGGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCACCGGCG CCTTGGA CCATAA CCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACT ]
[-] EMBL CD200622 [ GGCATTGGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCACCGGCG CCTTGGA CCATAA CCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACTT ]
[-] EMBL BF440128 [ tgacacTTTCG TTA TTCGG ACGAGATGA CGT GTGAA GAG AGT GCGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGNCCTTGGANCCATAANCCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCAT AAAACGACCGGGACCTGTAAAATGACTTATGTCGTGATACTCAC TTCTTTTTNGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGA ]
[-] EMBL CD155647 [ ATCAGATTTATTATTCCATCGGCG CCTTGGA CCATAA CCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACTTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGAC ]
[-] EMBL CD077836 [ CCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATC ]
[+] EMBL CD192183 [ acCGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAG ]
[+] EMBL CD140277 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCC TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACTGTAGTC AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGAT ]
[+] EMBL CD196303 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTAAATTCGTCAGACGAGAGAAACGNTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGATTTCTTAGCC TTG AAACTTCGATTTTCGCTCAATAGGACTT ]
[+] EMBL CD196334 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGCATAAGACGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGGTTATTGTATACAGCCGTCCCTGAATTCGACAGACGAGAGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTG ]
[+] EMBL CD140099 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCC TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACCGTAGTC AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGGTTTTTCGTCTTG ]
[+] EMBL CD140130 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCC TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACCGTAGTC CAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTC ]
[+] EMBL CD196271 [ CCATATCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGGTTTCTTAGCC TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACTGTAGTC AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATT ]
[-] EMBL CD140082 [ TTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCCTTTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACTGTAGTC AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCCTGGTAATCATTGTTTAAACCAT ]
[-] EMBL CD196317 [ cGTAGTCAAAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCCTGGTAATCATTGTTTAAACCAT ]
[+] EMBL CD148105 [ TTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCCTGGTAATCATTGTTTAAACCTAAGCATCATGCAACAAATCACAAGAGTAAAAC]
consensusID : consensus_11014#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[GATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACTTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATCAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAGTGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGAC]
[-] EMBL CD089756 [GATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACTTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATCAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAGTGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGAC]
consensusID : consensus_11014#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 417 fasta sequence
[ATGATGCTTAGGTTTAAACAATGATTACCAGGAAGCGCTCATACTCATCACGTTCCCGTTCCAGGTCATCAGGATTTTATACACCAAGACGAAAAAACCGATCCAGAAATCGACAAAGGTCACATTCAAAAAATTTTGACTACAGTCCTCGACGTTCTTTAAGTCCTATTGAGCGAAAATCGAAGTTTTCAAGGCTAAGAAAACCTGAAATACAATCAAGTGTTAATCCAATCACTGACTTTCAGACTGAAGGTGTACGAACTACTGCACGTGATTCACATTCTCCTATATCTTTAACAGAACGTTTCACTCGTCTGACGAATTCAGGGACGGCTGTATACAATAAACGCAGGTATGGTCGTTTTGGAGATAACCATCGTCTTCCACATCTTATACTTACCAATAATACAAAAATCC]
[+] EMBL CD140117 [ATGATGCTTAGGTTTAAACAATGATTACCAGGAAGCGCTCATACTCATCACGTTCCCGTTCCAGGTCATCAGGATTTTATACACCAAGACGAAAAAACCGATCCAGAAATCGACAAAGGTCACATTCAAAAAATTTTGACTACAGTCCTCGACGTTCTTTAAGTCCTATTGAGCGAAAATCGAAGTTTTCAAGGCTAAGAAAACCTGAAATACAATCAAGTGTTAATCCAATCACTGACTTTCAGACTGAAGGTGTACGAACTACTGCACGTGATTCACATTCTCCTATATCTTTAACAGAACGTTTCACTCGTCTGACGAATTCAGGGACGGCTGTATACAATAAACGCAGGTATGGTCGTTTTGGAGATAACCATCGTCTTCCACATCTTATACTTACCAATAATACAAAAATCC]
[+] EMBL CD140245 [ atGGTTTAAACAATGATTACCAGGAAGCGCTCATACTCATCACGTTCCCGTTCCAGGTCATCAGGATTTTATACACCAAGACGAAAAAACCGATCCAGAAATCGACAAAGGTCACATTCAAAAAATTTTGACTACAGTCCTCGACGTTCTTTAAGTCCTATTGAGCGAAAATCGAAGTTTTCAAGGCTAAGAAAACCTGAAATACAATCAAGTGTTAATCCAATCACTGACTTTCAGACTGAAGGTGTACGAACTACTGCACGTGATTCACATTCTCCTATATCTTTAACAGAACGTTTCACTCGTCTGACGAATTCAGGGACGGCTGTATACAATAAACGCAGGTATGGTCGTCCTGGAGATAACCATCGTCTTCCACATCTTATAC ]
consensusID : consensus_11014#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence
[CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCCTTGAAAACTTCGATTTTCGCTCAATAGGACTTANAGAACGTCGAGGACTGTAGTCAAAATTTTTTGAATGTGACCTTTGTCGATTTCTNTC]
[+] EMBL CD196336 [CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCCTTGAAAACTTCGATTTTCGCTCAATAGGACTTANAGAACGTCGAGGACTGTAGTCAAAATTTTTTGAATGTGACCTTTGTCGATTTCTNTC]
consensusID : consensus_11014#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[GGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGATTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTC]
[-] EMBL CD201209 [GGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGATTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTC]
consensusID : consensus_11014#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[CGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGCTTCATCAAAGAAATACCGGTCAGGTTATTTGTCAATTTCAAGTTTAATTTCATAAAGACATCACATTACTTTTACC]
[+] EMBL CD155553 [CGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGCTTCATCAAAGAAATACCGGTCAGGTTATTTGTCAATTTCAAGTTTAATTTCATAAAGACATCACATTACTTTTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11014#1 ------------------------------------------------------------
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 AAAGCAGTCTAATTGAGTACAGATATTTTGCGAAAATATTGCGCACTAGATATGATTCCT 60
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 -----------------------------------------------------AGGCATT 7
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 TGTACATAATTTCTTATCTATGAACACATTACCCTGATTGAGACATAAAGGCCACGTAAT 120
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 GGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCAC 67
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 CTATGTATACTTATTCGTCGTTAACTTTTTTCAGATAAGCGTTCATTGATTCATAAGACT 180
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 TTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGA 127
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 TAAATGTGAAATGAAAATGCTTTGTCACTAAGGTGACGTGCAGTTTTATACTATATTTGA 240
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 CGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCACCGGCGCCTT 187
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 GGTGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTA 300
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 GGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTT 247
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 AATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAA 360
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 TCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTG 307
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 TGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAACAGAGACAAA 420
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 CCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACTTTCTTTTTNG 367
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 AAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAA 480
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 TTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTG 427
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 ACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACT 540
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 TAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACA 487
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 GTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACAC 600
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 GGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAAT 547
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 GATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGA 60
consensus_11014#0 AACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGA 660
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 GTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACA 607
consensus_11014#4 ----------------------------CCATATTAAGAGGAAATGTTCGCTCTATGACA 32
consensus_11014#2 TAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCC 120
consensus_11014#0 TTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAGCAGTTTTATTTCC 720
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ----------------------------------ATGATGCTTAGGTTTAAACAATGATT 26
consensus_11014#1 ATTGAAATTTCTTTAGCCTGACG--CATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGG 665
consensus_11014#4 ATTGAAATTTCTTTAGCCTGACG--CATAAGAGTTGCTG--------------------- 69
consensus_11014#2 ATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACTTTCTTTTTTGTTGTCC 180
consensus_11014#0 ATTCAATATTTCTTTTCCAATAGTAGACCATAATATAGGTTTGGGAGCAGGAACAGGCAT 780
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 ACCAGGAAGCGCTCATACTCATCACGTTCCCGTTCCAGGTCATCAGGATTTTATACACCA 86
consensus_11014#1 TAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGT 725
consensus_11014#4 --------------------------------------------------CGTTTATTGT 79
consensus_11014#2 GTATTATTGGATCTTCGTGAATTCGAGGAC-------------------GAAATCGTGTC 221
consensus_11014#0 TGGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCA 840
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 ------------------------------------------------------------
consensus_11014#3 AGACGAAAAAACCGATCCAGAAATCGACAAAGGTCACATTCAAAAAATTTTGACTACAGT 146
consensus_11014#1 ATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAAT 785
consensus_11014#4 ATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAAT 139
consensus_11014#2 CATCAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGG 281
consensus_11014#0 CTTTTTCGGTT--TAATTTCG--GAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAG 896
consensus_11014#6 ------CGGTT--TAATTTCG--GAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAG 50
consensus_11014#5 -------GGTT--TAATTTCG--GAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAG 49
consensus_11014#3 CCTCGACGTTCTTTAAGTCCTATTGA-GCGAAAATCGAAGTTTTCAAGGC-TAAGAAAAC 204
* * * * * * * *
consensus_11014#1 GTGAA---TCACGTGCAGTAGTTCGTAC-ACCTTCAGTCTGAAAGTCAGTGATTGGATTA 841
consensus_11014#4 GTGAA---TCACGTGCAGTAGTTCGTAC-ACCTTCAGTCTGAAAGTCAGTGATTGGATTA 195
consensus_11014#2 ACGA----TCAAATACAG--GTTTGCA--ACCTTCATTTGGACGACGAGGTATTATAATG 333
consensus_11014#0 ATCGACGGTCACGT-CGGTAGCTAGAAG-AGTACAAACGATCAGATTTATTATTCCATCG 954
consensus_11014#6 ATCGACGGTCACGT-CGGTAGCTAGAAG-AGTACAAACGATCAGATTTATTATTCCATCG 108
consensus_11014#5 ATCGACGGTCACGT-CGGTAGCTAGAAG-AGTACAAACGATCAGATTTATTATTCCATCG 107
consensus_11014#3 CTGAA---ATACAATCAAGTGTTAATCCAATCACTGACTTTCAGACTGAAGGTGTACGAA 261
* * * * * *
consensus_11014#1 ACAC-TTGATTGTATTTCAGGTTTTCTTAGCCTTGAAAACTT---CGATTTTCGCTCAAT 897
consensus_11014#4 ACAC-TTGATTGTATTTCAGGTTTTCTTAGCCTTGAAAACTT---CGATTTTCGCTCAAT 251
consensus_11014#2 TGAC-TATGACGAAAATCAAGTGTCACAGGTTTTTCATGTGG---TGATAAATCCATATT 389
consensus_11014#0 GCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTT 1014
consensus_11014#6 GCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGCTT-CATCAAAGAAATACCGG 167
consensus_11014#5 GCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTT 167
consensus_11014#3 CTAC--TGCACGTGATTCACATTCTCCTATATCTTTAACAGA--ACGTTTCACTCGTCTG 317
* ** * *
consensus_11014#1 AGGACTTAAAGAACG-TCGAGGACTGTAGTCAAAATTTTTTGAATGTGACCTTTGTCGAT 956
consensus_11014#4 AGGACTTANAGAACG-TCGAGGACTGTAGTCAAAATTTTTTGAATGTGACCTTTGTCGAT 310
consensus_11014#2 AAGAGGAAATGTTCGCTCTATGAC---AATTGAAATTTCTTTAGCCTGACGCATAAGAGT 446
consensus_11014#0 CGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTAC 1074
consensus_11014#6 TCAGGTTATTTGTCAATTTCAAGTTTAATTTCATAAAGACATCACATTACTTTTACC--- 224
consensus_11014#5 CGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTAC 227
consensus_11014#3 ACGAATTCAGGGACGGCTGTATACAATAAACGCAGGTATGGTCGTTTTGGAGATAACCAT 377
*
consensus_11014#1 TTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTC 1016
consensus_11014#4 TTCTNTC----------------------------------------------------- 317
consensus_11014#2 TGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGAC------------- 493
consensus_11014#0 TCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTAGGCCTCGAGCCGAGT---- 1130
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 TCGATTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTG 287
consensus_11014#3 CGTCTTCCACATCTTATACTTACCAATAATACAAAAATCC-------------------- 417
consensus_11014#1 GTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCC 1076
consensus_11014#4 ------------------------------------------------------------
consensus_11014#2 ------------------------------------------------------------
consensus_11014#0 ------------------------------------------------------------
consensus_11014#6 ------------------------------------------------------------
consensus_11014#5 TCCATTAAACGTTTGTAAATCAGAGCTTC------------------------------- 316
consensus_11014#3 ------------------------------------------------------------
consensus_11014#1 TGGTAATCATTGTTTAAACCATAGCATCATGCAACAAATCACAAGAGTAAAAC 1129
consensus_11014#4 -----------------------------------------------------
consensus_11014#2 -----------------------------------------------------
consensus_11014#0 -----------------------------------------------------
consensus_11014#6 -----------------------------------------------------
consensus_11014#5 -----------------------------------------------------
consensus_11014#3 -----------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||