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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 527 fasta sequence
[TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC-AAAAATACGTT-GATGAATGTTCAAAA-AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA-GGTGTG-AACC-AAAAAAGTTTGGTGGCT-CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAATATATATTGA]
[+] EMBL CD154986 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACG ]
[+] EMBL CD193197 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGT ]
[+] EMBL CD151863 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAGACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGC ]
[+] EMBL CD187699 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTACGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACCGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAAATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGG ]
[+] EMBL CD097998 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATAT ]
[-] EMBL CD151788 [ TAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCGACCAACCGAAAGAGAAACCCAAGGCTGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCGCTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAATTAATGGAGCCCATATTCCTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGCGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGATAAGTCAGTGGTAGCATTCCATC AAACATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATATAAGCTTGTTAGTCGTTGATCCAAGTA GGTGTG AACC AAAAAAGTTTGGTG ]
[-] EMBL CD148181 [ TAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAAAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AATAATACGTC GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTA ]
[-] EMBL CD113671 [ GTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGG ]
[-] EMBL CD113563 [ GTCTCAAGGCGCGTCTTGCAGAGTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACCTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGG ]
[+] EMBL CD090911 [ aGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAAACAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTCCTGGAACCACGTCCTTTGTT ]
[+] EMBL AI975077 [ TAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAATTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAATATATATT ]
[-] EMBL CD097373 [ GTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGTGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAAT ]
[-] EMBL CD155099 [ TGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGG ]
[+] EMBL CD132644 [ AGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGGTTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAG GAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTC ]
[+] EMBL CD159058 [ TGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAA ]
[-] EMBL BG932800 [ AGAGTTCGGGTCAGTGATGGTGATCGATTGGCTCAGATATATGCTGTCAGGCAAGTTATTGATAAGTCAGTGGTAGCATTCCATC GAATATACGTT GATGAATGTTCAGAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTtgat ]
[-] EMBL CD147742 [ TCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAAT ]
[-] EMBL CD147915 [ TCGACTGGCTCAGATATATACTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGAT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAATGGTGTG AACCAAAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAATATATATTGA]
[-] EMBL BG930505 [ TCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAG ]
[-] EMBL CD166063 [ GATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGC ]
[-] EMBL CD193763 [ CTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTT ]
[-] EMBL CD136192 [ CTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTT ]
[+] EMBL CD059945 [ TGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATA ]
[-] EMBL AA791330 [ GCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAAATACGTTCGATGAATGTTCAAAACCATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTT ]
[-] EMBL CD098119 [ GAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGATGATCCAAGGA GGTGTGCAACC AAAAAAGTTTGGTGGCTGCCGGAGCTCGT ]
consensusID : consensus_11015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 308 fasta sequence
[GTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAAGGTGTGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAATACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGA]
[-] EMBL CD124563 [GTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAAGGTGTGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAATACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGA]
[-] EMBL CD124577 [GTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAAGGTGTGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAATACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGA]
[-] EMBL CD130623 [ ggTTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGTTCAGATATATGCTGTCAGGCAAGCTGTTGCTAAGTCAGTGGTAGCATTCCATCAAAAATACGTTGATGAATGTTCAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11015#0 TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTG 60
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 TATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAG 120
consensus_11015#1 ----------------------------------------GTTCGTTCAGTATGATAGAA 20
*** * * * * * * *
consensus_11015#0 CAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCAT 180
consensus_11015#1 GCTTGTTAGTCGCTGATCCAAGA---AGGTGTG-AACCATCAGAGTGAACGGCAGACCAT 76
****** * * * * * * **************************
consensus_11015#0 TAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTG 240
consensus_11015#1 TAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTG 136
************************************************************
consensus_11015#0 GAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGG 300
consensus_11015#1 GAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGG 196
************************************************************
consensus_11015#0 CTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAAT 360
consensus_11015#1 CTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAAT 256
************************************************************
consensus_11015#0 ACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCT 420
consensus_11015#1 ACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGA-------- 308
****************************************************
consensus_11015#0 TGTTAGTCGCTGATCCAAGAAGGTGTGAACCAAAAAAGTTTGGTGGCTCCGGAGCTCGTG 480
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 CAAGATACCAGAAATCATACCGTTAATCTAGCTTAAATATATATTGA 527
consensus_11015#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||