These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 527 fasta sequence [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC-AAAAATACGTT-GATGAATGTTCAAAA-AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA-GGTGTG-AACC-AAAAAAGTTTGGTGGCT-CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAATATATATTGA] [+] EMBL CD154986 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACG ] [+] EMBL CD193197 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGT ] [+] EMBL CD151863 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAGACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGC ] [+] EMBL CD187699 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTACGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACCGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAAATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGG ] [+] EMBL CD097998 [TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATAT ] [-] EMBL CD151788 [ TAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCGACCAACCGAAAGAGAAACCCAAGGCTGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCGCTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAATTAATGGAGCCCATATTCCTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGCGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGATAAGTCAGTGGTAGCATTCCATC AAACATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATATAAGCTTGTTAGTCGTTGATCCAAGTA GGTGTG AACC AAAAAAGTTTGGTG ] [-] EMBL CD148181 [ TAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAAAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AATAATACGTC GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTA ] [-] EMBL CD113671 [ GTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGG ] [-] EMBL CD113563 [ GTCTCAAGGCGCGTCTTGCAGAGTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACCTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGG ] [+] EMBL CD090911 [ aGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTGTATGCAAACAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTCCTGGAACCACGTCCTTTGTT ] [+] EMBL AI975077 [ TAGGCATTATAATGCAGACTGTATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAATTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAATATATATT ] [-] EMBL CD097373 [ GTACAAGTGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGTGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAAT ] [-] EMBL CD155099 [ TGTTTGGACGGAAGAAAACAGCAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGG ] [+] EMBL CD132644 [ AGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGGTTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAG GAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTC ] [+] EMBL CD159058 [ TGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAA ] [-] EMBL BG932800 [ AGAGTTCGGGTCAGTGATGGTGATCGATTGGCTCAGATATATGCTGTCAGGCAAGTTATTGATAAGTCAGTGGTAGCATTCCATC GAATATACGTT GATGAATGTTCAGAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTtgat ] [-] EMBL CD147742 [ TCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAAT ] [-] EMBL CD147915 [ TCGACTGGCTCAGATATATACTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGAT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAATGGTGTG AACCAAAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTTAATCTAGCTTAAATATATATTGA] [-] EMBL BG930505 [ TCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAG ] [-] EMBL CD166063 [ GATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGC ] [-] EMBL CD193763 [ CTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTT ] [-] EMBL CD136192 [ CTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTT ] [+] EMBL CD059945 [ TGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATC AAAAATACGTT GATGAATGTTCAAAA AATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGGA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATA ] [-] EMBL AA791330 [ GCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAAATACGTTCGATGAATGTTCAAAACCATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAA GGTGTG AACC AAAAAAGTTTGGTGGCT CCGGAGCTCGTGCAAGATACCAGAAATCATACCGTT ] [-] EMBL CD098119 [ GAGAAGTTCGTTCAGTATGATAGAAGCTTGTTAGTCGATGATCCAAGGA GGTGTGCAACC AAAAAAGTTTGGTGGCTGCCGGAGCTCGT ] consensusID : consensus_11015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 308 fasta sequence [GTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAAGGTGTGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAATACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGA] [-] EMBL CD124563 [GTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAAGGTGTGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAATACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGA] [-] EMBL CD124577 [GTTCGTTCAGTATGATAGAAGCTTGTTAGTCGCTGATCCAAGAAGGTGTGAACCATCAGAGTGAACGGCAGACCATTAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTGGAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGCTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAATACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGA] [-] EMBL CD130623 [ ggTTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGGTTCAGATATATGCTGTCAGGCAAGCTGTTGCTAAGTCAGTGGTAGCATTCCATCAAAAATACGTTGATGAATGTTCAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11015#0 TTAGTCTCAAGGCGCGTCTTGCAGATTTTTCACGTTCCGTAGGCATTATAATGCAGACTG 60 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 TATGCAACCAACCGAAAGAGAAACCCAAGGCCGTACAAGTGTTTGGACGGAAGAAAACAG 120 consensus_11015#1 ----------------------------------------GTTCGTTCAGTATGATAGAA 20 *** * * * * * * * consensus_11015#0 CAACAGCTGTCGCTCACTGTAAACTCGGATCCGGAACCATCAGAGTGAACGGCAGACCAT 180 consensus_11015#1 GCTTGTTAGTCGCTGATCCAAGA---AGGTGTG-AACCATCAGAGTGAACGGCAGACCAT 76 ****** * * * * * * ************************** consensus_11015#0 TAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTG 240 consensus_11015#1 TAGATGTACTGGAACCACGTCCTTTGTTGCCCAAACTAATGGAGCCCATCTTACTACTTG 136 ************************************************************ consensus_11015#0 GAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGG 300 consensus_11015#1 GAAAACACGGATTATCTAACTTGGACATCAGAGTTCGGGTCAGTGGTGGTGGTCGAGTGG 196 ************************************************************ consensus_11015#0 CTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAAT 360 consensus_11015#1 CTCAGATATATGCTGTCAGGCAAGCTATTGCTAAGTCAGTGGTAGCATTCCATCAAAAAT 256 ************************************************************ consensus_11015#0 ACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGATAGAAGCT 420 consensus_11015#1 ACGTTGATGAATGTTCAAAAAATATGATTAAGGAGAAGTTCGTTCAGTATGA-------- 308 **************************************************** consensus_11015#0 TGTTAGTCGCTGATCCAAGAAGGTGTGAACCAAAAAAGTTTGGTGGCTCCGGAGCTCGTG 480 consensus_11015#1 ------------------------------------------------------------ consensus_11015#0 CAAGATACCAGAAATCATACCGTTAATCTAGCTTAAATATATATTGA 527 consensus_11015#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||