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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 24 consensus length = 1139 fasta sequence
[TAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGTAGGAGGAGTAGTGGCAGTAGTAGTGGTAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTCGACCCATATTATCACTTTGTATACCACCGATTTTGTTCATCAATGGTGAAATAGGTGCGACTTCACCGGAAACTGTTGTAATATTGGTATTAATCACAGTATTTGTTGAATGTTCAATGTGGGCACGGTTGAGTACTTTCAAGAATTCCACTGTTTTAGCACGCATACGCATTTGCATATAAGCTTTGGAACATTTAATATGATAGTGTAAATAGTTTCTTAATGTTTGTATTAGATCGATGGTGGAATTACGCGCAGATTCAGTGGATAAATGACGCGGAAAAAGCACAAAAGTGTAGAAATATATATAACAGAAAAAGAAAAACTAATGACCATTATCAATATCAAAAATATAGGGAGGGATTATAAAATGGATGTTTTCACAATTCATGTATACCAAAAAGTATACTACAACAGGTAGGCGGTACCTTAGTAATTTAAAAACACAAGCTTCCAAAGTTGAGTCATTCACTGATTTTATGACAGTCTGGAAAGCCGATTAGTATTTCTAGCCTTAAAAGCACCAATGTACAAACCTATACTTGAATAATGGAAATAATTCAAACACACAGGAATGTATCTATCGGTGAATAATGTAAAACAAACATAGTACGTATGCTGTTTCATTNTGAAGATTTCATANAAATATTATTGAAACCATGAACCGATCTAAGNTAGACAATCATCGAAAACTTGAGGTGACTTGATGGCTATTTCGT]
[-] EMBL CD114387 [TAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGTAGGAGGAGTAGTGGCAGTAGTAGTGGTAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAACAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTC ]
[-] EMBL CD195221 [ GTGGTAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCACCAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTCGACC ]
[+] EMBL CD071826 [ GTAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGAATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[+] EMBL CD071833 [ GTAGTATTAGCAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGAATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[+] EMBL CD071831 [ GTAGTATTAGCAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGAATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[+] EMBL CD071850 [ GTAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[-] EMBL CD114479 [ TAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGCAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAGATCTCTACTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAACGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTC ]
[+] EMBL CD196737 [ TAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTCGACCCATATTATCACTTTGTATACCACCGATTTTGTTCATCAATGGTGAAATAGGTGCGACTTCACCGGAAACTGTTGTAATATTGGTATTAATCACAGTATTTGTT ]
[+] EMBL CD195369 [ AGTAGCAGTAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTGCGCATTGGTCCACCCAT ]
[-] EMBL CD071817 [ TAGTAGGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTC ]
[-] EMBL CD195261 [ GGAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCTATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTCGACC ]
[+] EMBL CD069417 [ AGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAGATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAACATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATAGTTCGACCCATATTATCACTTTGTATACCACCGATTTTGTTCATCAATGGTGAAATAGGTGCGACTTCACCGG ]
[+] EMBL CD088261 [ AGTAGTAGTAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATTTCGTTGAAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[-] EMBL CD071861 [ TAGTAGTAGTAGTAGTAGGAGTAGTAGCAATATTACGAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTGCGCATTGTTC ]
[+] EMBL CD195062 [ AGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTCGAC ]
[+] EMBL CD071866 [ GCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAACAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAGTCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[+] EMBL CD071860 [ GCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAACAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAGTCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[+] EMBL CD167888 [ GTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTCGACCCATATTATCACTTTGTATACCACCGATTTTGTTCATCAATGGTGAAATAGGTGCGACTTCACCGGAAACTGTTGTAATATTGGTATTAATCACAGTATTTGTTGAATGTTCAATGTGGGCACGGTTGAGTACTTTCAAGAATTCCACTGTTTTAGCACGCATACGCATTTGCATATAAGCTTTGGAACATTTAATATGATAGTGTAAATAGTTTCTTAATGTTTGTATTAGATCGATGGTGGAATTACGCGCAGATTCAGTGGATAAATGACGCGGAAAAAGCACAAAAGT ]
[+] EMBL CD069262 [ ctgAGTACGAGGAGAAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCACTGTTCGACCCATATTATCACTTTGTATACCACCGATTTTGTTCATCAATGGTGAAATAGGTGCGACTTCACCGGAAACTGTTGTAATATTGGTATTAATCACAGTATTTGTTGAATGTTCAATGTGGGCACGGTTGAGTACTTTCAAGAATTCCACTGTTTTAGCACGCATACGCATTTGCATATAAGCTT ]
[+] EMBL CD195024 [ AGTAGTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAGTGGTAATAATACAGATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAGTTGATTGATTGAAAATATTAGCCTGTACGCATTGTTCGAC ]
[+] EMBL CD071838 [ GTAGCAATATTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAACAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[+] EMBL CD071856 [ GTAGCAATACTACAAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAACAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT ]
[-] EMBL CD071845 [ AAAATATCGTTGTAACTATTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAATCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACAGCAACAACAACAGAATAATGGTAATAATACAAATAGTAAAGGAAACTAACGTTGAAAGAATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTTC ]
[+] EMBL CD153942 [ TCAAGAATTCCACTGTTTTAGCACGCATACGCATTTGCATATAAGCTTTGGAACATTTAATATGATAGTGTAAATAGTTTCTTAATGTTTGTATTAGATCGATGGTGGAATTACGCGCAGATTCAGTGGATAAATGACGCGGAAAAAGCACTAGGATGTAGAAATATATATAACAGAAAAAGAAAAACTAATGACCATTATCAATATCAAAAATATAGGGAGGGATTATAAAATGGATGTTTTCACAATTCATGTATACCAAAAAGTATACTACAACAGGTAGGCGGTACCTTAGTAATTTAAAAACACAAGCTTCCAAAGTTGAGTCATTCACTGATTTTATGACAGTCTGGAAAGCCGATTAGTATTTCTAGCCTTAAAAGCACCAATGTACAAACCTATACTTGAATAATGGAAATAATTCAAACACACAGGAATGTATCTATCGGTGAATAATGTAAAACAAACATAGTACGTATGCTGTTTCATTNTGAAGATTTCATANAAATATTATTGAAACCATGAACCGATCTAAGNTAGACAATCATCGAAAACTTGAGGTGACTTGATGGCTATTTCGT]
consensusID : consensus_11017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 880 fasta sequence
[GTAATATTGGTATTAATCACAGTATGTGTTGAATGTTCAATGTGCGCACGGTTGAGTACTTTCAAGAATTCCTCTGTTTTAGCACGCATACGCATTTGCATATAAGCTTTGGAACATTTAATATGATAGTGTAAATAGTTTCTTAATGTTTGTATTAGATCGATGGTGGAATTACGCGCAGATTCAGTGGATAAATGACGCGGAAAAAGCTCAAAAGTAATGTACGCAACTGAATCACTGATAACTGCATCAGTTCCCTGTAATTCTTTTGGTGGAACACGATGAGAATACAATACTTGGGGTGCTCGATCAAGACGTCTTCTTACCTCAGTGAACTCTTGCATAAAAACTTTTCCAATTAACAAATCATCTGGATCTTTAAATGTTGTACTAAAGATAACTGTAACTCGATCAGCTAATGCTTGTACATACATTGTTTCATCGTCTCTATAATGTATCACCGCCCTCTTAGAACCCGAATCCGCGTTAGATTTAATTTGATATTCGAAAAACTTCTCAAAAACAGCTGCCATACAATTTCTTTTTAAAAGACCACATTTGTGAGCTAATTGATTATGATCAGAAGGTAGTTTTTCTAAATCTATGCATAAGGTTACACTTTGATTGGGCTCTGCTGAAGAAAGAAAGTCACCATACTCACGAGCCAATACTTCATTTACCCCATGTTCTTTCAGTTCATGAAAGAATTTAATGAATATACTGACAAGAATCTTTTTCTTATCATTATTTGGATTACTTATGGTGTAAACAATACTATCGAAGTCCGCAACGGTGTAATCAATTTTATCATATCTGGATTCCTCTTTTGCCTGTTCAAATCTCGTGACTAGAATTTCTTCTACAGCTCTGTTACAAACTT]
[-] EMBL AI977493 [GTAATATTGGTATTAATCACAGTATGTGTTGAATGTTCAATGTGCGCACGGTTGAGTACTTTCAAGAATTCCTCTGTTTTAGCACGCATACGCATTTGCATATAAGCTTTGGAACATTTAATATGATAGTGTAAATAGTTTCTTAATGTTTGTATTAGATCGATGGTGGAATTACGCGCAGATTCAGTGGATAAATGACGCGGAAAAAGCTCAAAAGTAATGTACGCAACTGAATCACTGATAACTGCATCAGTTCCCTGTAATTCTTTTGGTGGAACACGATGAGAATACAATACTTGGGGTGCTCGATCAAGACGTCTTCTTACCTCAGTGAACTCTTGCATAAAAACTTTTCCAATTAACAAATCATCTGGATCTTTAAATGTTGTACTAAAGATAACTGTAACTCGATCAGCTAATGCTTGTACATACATTGTTTCATCGTCTCTATAATGTATCACC ]
[-] EMBL CD164350 [ TTTCAAGAATTCCACTGTTTTAGCACGCATACGCATTTGCATATAAGCTTTGGAACATTTAATATGATAGTGTAAATAGTTTCTTAATGTTTGTATTAGATCGATGGTGGAATTATGCGCAGATTCAGTGGATAAATGACGCGGAAAAAGCACAAAAGTAATGTACGCAACTGAATCACTGATAACTGCATCAGTTCCCTGTAATTCTTTTGGTGGAACACGATGAGAATAC ATACTTGGGGTGCTCGATC AGACGTCT ]
[-] EMBL AI977429 [ GATCTTTAAATGTTGTACTAAAGATAACTGTAACTCGATCAGCTAATGCTTGTACATACATTGTTTCATCGTCTCTATAATGTATCACCGCCCTCTTAGAACCCGAATCCGCGTTAGATTTAATTTGATATTCGAAAAACTTCTCAAAAACAGCTGCCATACAATTTCTTTTTAAAAGACCACATTTGTGAGCTAATTGATTATGATCAGAAGGTAGTTTTTCTAAATCTATGCATAAGGTTACACTTTGATTGGGCTCTGCTGAAGAAAGAAAGTCACCATACTCACGAGCCAATACTTCATTTACCCCATGTTCTTTCAGTTCATGAAAGAATTTAATGAATATACTGACAAGAATCTTTTTCTTATCATTATTTGGATTACTTATGGTGTAAACAATACTATCGAAGTCCGCAACGGTGTAATCAATTTTATCATATCTGGATTCCTCTTTTGCCTGTTCAAATCTCGTGACTAGAATTTCTTCTACAGCTCTGTTACAAACTT]
consensusID : consensus_11017#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[CCAAATTCTCTGTGCGTTTGGAAGATTATTATTATTGTTAAAATTATTAAAATACAAAGATGTGTGAATAATATGTAAGGTAAATTCAAGTTGTGAAAATACTAAAGGGAAGACTGTGTAGATTCACTAGTAAAATTAGATTGTCTGGTTATTAAGATTACTATTCACGCATCAGGCCTGAGATTAGCCAAGATACAAGAAGCGGTTCAATATACATCGTTTACACACTGACTACAGTTTTTAAAACCGTCTGATTATTCCCTCTGTCGTCCGACAAATTTTCTTCAGACATTTAAAAGTACGATATTTCTTTATATTACTTTTGGAGCATACTCGATTGAAATTTTTCTTTCAAGTTATGTGAATAGATTTACTTTTGTTAAGCAAGCACAGCGAGCATTGTGTGGTAAAGTAAATTCATTTCATTTCCTTTACTATTTGTATTACTACCATTATTCTGTTGTTGTTGCTGTTGTTATTTTCTACTCTATTCACTTTGATATTTTGTTGTTTATTTTTT]
[+] EMBL CD194893 [CCAAATTCTCTGTGCGTTTGGAAGATTATTATTATTGTTAAAATTATTAAAATACAAAGATGTGTGAATAATATGTAAGGTAAATTCAAGTTGTGAAAATACTAAAGGGAAGACTGTGTAGATTCACTAGTAAAATTAGATTGTCTGGTTATTAAGATTACTATTCACGCATCAGGCCTGAGATTAGCCAAGATACAAGAAGCGGTTCAATATACATCGTTTACACACTGACTACAGTTTTTAAAACCGTCTGATTATTCCCTCTGTCGTCCGACAAATTTTCTTCAGACATTTAAAAGTACGATATTTCTTTATATTACTTTTGGAGCATACTCGATTGAAATTTTTCTTTCAAGTTATGTGAATAGATTTACTTTTGTTAAGCAAGCACAGCGAGCATTGTGTGGTAAAGTAAATTCATTTCATTTCCTTTACTATTTGTATTACTACCATTATTCTGTTGTTGTTGCTGTTGTTATTTTCTACTCTATTCACTTTGATATTTTGTTGTTTATTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11017#0 TAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAGGAGTAGTAGTAGGAGGAG 60
consensus_11017#1 ------------------------------------------------------------
consensus_11017#2 ------------------------------------------------------------
consensus_11017#0 TAGTGGCAGTAGTAGTGGTAGTAGTAGTAATCGTAGTAGTAGGAGGAGTAGCAGTAGTAG 120
consensus_11017#1 ------------------------------------------------------------
consensus_11017#2 ------------------------------------------------------------
consensus_11017#0 GAGTAGTAGCAGTAGTAGTAGTAGGAGTAGTAGCAATATTACAAAATATCGTTGTAACTA 180
consensus_11017#1 --------------------GTAATATTGGTATTAAT--CACAGTATGT-GTTG-AATGT 36
consensus_11017#2 ------------------------------------------------------------
consensus_11017#0 TTCTTCTGATTTCAATTCATTAATTAATTAACATCTAATTAGTATTAACAATTAAGAAAA 240
consensus_11017#1 TCAATGTGCGCACGGTTGAGTACTT--TCAAGAATTCCTCTGTTTTAGCACGCATACGCA 94
consensus_11017#2 ------------------------------------------------------------
consensus_11017#0 TCTCTATTCTAAAAAATAAACAACAAAATATCAAAGTGAATAGAGTAGAAAATAACAACA 300
consensus_11017#1 TTTGCAT--------ATAAGCTTTGGAACATTTAATATGATAGTGTAAATAGTTTCT-TA 145
consensus_11017#2 ------------------------------------------------------------
consensus_11017#0 GCAACAACAACAGAATAATGGTAATAATACAAATAG-TAAAGGAAACTAACGTTGAAAGA 359
consensus_11017#1 ATGTTTGTATTAGATCGATGGTGGAATTACGCGCAGATTCAGTGGATAAATGACGCGGAA 205
consensus_11017#2 ------------------------------------------------------------
consensus_11017#0 ATGTTTCGTTCCTAAATCAATAAATTGATTGATTGAAAATATTAGCCTGTACGCATTGTT 419
consensus_11017#1 AAAGCTCAAAAGTAATGTACGCAACTGAATCACTGATAACTGCATCAGTTCCCTGTAATT 265
consensus_11017#2 ------------------------------------------------------------
consensus_11017#0 CGACCCATATTAT-CACTTTGTATACCACCGATTTTGTTCATCAATGGTGAAATAGGTGC 478
consensus_11017#1 CTTTTGGTGGAACACGATGAGAATACAAT-ACTTGGGGTGCTCGATCAAGACGTCT-TCT 323
consensus_11017#2 ----------------------------------------------------------CC 2
consensus_11017#0 GACTTCACCGGAAACTGTTGTAATATTGGTATTAATCACAGTATTTGTTGAATGTTCAAT 538
consensus_11017#1 TACCTCAGTGAACTCTTGCATAAAAACTTTTCCAATTAACAAATCATCTGGATCTTTAA- 382
consensus_11017#2 AAATTCTCTGTGCGTT--TGGAAGATTATTATTATTGTTAAAATTATTAAAATACAAAG- 59
* ** * * ** * * * * ** ** *
consensus_11017#0 GTGGGCACGGTTGAGTACTTTCAAGAATTCCACTGTTTTAGCACGCATACGCATTTGCAT 598
consensus_11017#1 ------ATGTT---GTACT---AAAGATAACTGTAACTCGATCAGCTAATGCTTGTACAT 430
consensus_11017#2 ------ATGTGTGAATAATATGTAAGGTAAATTCAAGTTG---TGAAAATACTAAAGGGA 110
* * ** * * * * * * *
consensus_11017#0 ATAAGCTTTGGAACATTTAATATGATAGTGTAAATAGTTTCTTAATGTTTGTATTAG--- 655
consensus_11017#1 ACATTGTTTC-ATCGTCTC-TATAAT-GTATCACCGCCCTCTTAGAACCCG-----A--- 479
consensus_11017#2 AGACTGTGTAGATTCACTAGTAAAATTAGATTGTCTGGTTATTAAGATTACTATTCACGC 170
* * * * * * ** ** * * ***
consensus_11017#0 ATCGATGGTGGAATTACGCGCAGATTCAGTGGATAAATGACGCGGAA-AAAGC-ACAAAA 713
consensus_11017#1 ATCCGCGTTAGATTTAATTTGATATTC----GAAAAACTTCTCAAAA-ACAGCTGCCATA 534
consensus_11017#2 ATCAGGCCTGAGATTA-GCCAAGATAC----AAGAAGCGGTTCAATATACATCGTTTACA 225
*** * *** * ** * * ** * * * * * * *
consensus_11017#0 GTGTAGAAATATATATAACAGAAAAAGAAAAACTAATGACCATTATCAATATCAAAAATA 773
consensus_11017#1 CAATTTCTTTTTAAAAGACCACATTTGTGAGCTAATTGATTATGATCAGAAGGTAGTTTT 594
consensus_11017#2 CACTGACTACA---GTTTTTAAAACCGTCTGATTATTC-CCTCTGTCGTCCGACAAATTT 281
* * * * * ** * *
consensus_11017#0 TAGGGAGGGAT-TATAAAATGGATGTTTTCAC--AATTCATGTATACCAAAAAGTATACT 830
consensus_11017#1 TCTAAATCTATGCATAAGGTT-ACACTTTGATTGGGCTCTGCTGAAGAAAGAAAGTCACC 653
consensus_11017#2 TCTTCAGACATTTAAAAGTACGATATTTC-------TTTATATTACTTTTGGAGCATACT 334
* * ** * ** * ** * * * **
consensus_11017#0 ACAACAGGTAGGCGGTACCTTAGTAATTTAAAAA-CACAAGCTTCCAAAGTTGAGTCATT 889
consensus_11017#1 ATACTCACGAGCCAATACTTCATTTACCCCATGTTCTTTCAGTTCATGAAAGAATTTAAT 713
consensus_11017#2 -CGATTGAAATTTTTCTTTCAAGTTATGTGAATAGATTTACTTTTGTTAAGCAAGCACAG 393
* * * * * ** * *
consensus_11017#0 CACTGATTTTATGACAGTCTGGAAAGCCGATTAGTATTTCTAGCCTTAAAAGCACCAATG 949
consensus_11017#1 GAATATACTGACAAGAATCTTTTT--CTTATCATTATTTGGATTACTTATGGTGTAAACA 771
consensus_11017#2 CGAGCATTGTGTGGTAAAGTAAATT-CATTTCATTTCCTTTACTATTTGTATTACTACCA 452
* * * * * * * * * *
consensus_11017#0 -TACAAACCTATACTTGAATAATGGAAATAATTCAAACACACAGGAATGTATCTATCGGT 1008
consensus_11017#1 ATACTATCGAAGTCCGCAACGGTGTAATCAATTTTATCATATCTGGATTCCTCTTTTGCC 831
consensus_11017#2 TTATTCTGTTGTTGTTGC-TGTTGTTATT--TTCTACTCTATTCACTTTGATATTTTGTT 509
** ** * ** * * * * * * *
consensus_11017#0 GAATAATGTAAAACAAACATAGTA-CGTATGCTGTTTCATTNTGAAGATTTCATANAAAT 1067
consensus_11017#1 TGTTCAAATCTCGTGACTAGAATTTCTTCTACAGCTCTGTTACAAACTT----------- 880
consensus_11017#2 GTTTATTTTTT------------------------------------------------- 520
* *
consensus_11017#0 ATTATTGAAACCATGAACCGATCTAAGNTAGACAATCATCGAAAACTTGAGGTGACTTGA 1127
consensus_11017#1 ------------------------------------------------------------
consensus_11017#2 ------------------------------------------------------------
consensus_11017#0 TGGCTATTTCGT 1139
consensus_11017#1 ------------
consensus_11017#2 ------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||