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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 24 consensus length = 1845 fasta sequence
[CACTCAACCTGTCTACAAAAATATCTATATCAGACATATAGAACTTGTAATCACACGGACAGCGTCCACATCAGAGTCTGCCCTATGATTATCATCATTAATACTTTACACATATTATACTAATAACACCATCAATACACCATATATACTATACATTACGATTCAATAAAACAACATCTGCTTCATCATCTACTTACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGAAATAACAACACAATAAAAATACAACACTATTAAATAAATTACAATCATTTCACATTATTATCACACCATCAATAACACACACAACACTCAAATCAGAGTTAAAAAGCTCGTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGATAGTGTTCATCATATTGCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACACATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAATTAATAACAAACACATGTAGTTAGCTCGCTCAACCAC-TATTATATTCA-ACAAGCCACACACACAAACAACACCCAGCATTAACAACAATGACATGCACACTCCTCAGTTGTACACTGTCAACAGATGACAAAGTCATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGCACCAACTCGCCCACTCACCTGATCTCTCAGTCGTCAC-CGTCTATCGCTC--CATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCATTCACGTTCAACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTACAAATATACAACAACAACAAAAACATTTTAACATACAATTCACCCAACACTGATTTTCTTACGCACACCGGTCAGTCAGATGTCAACTCACACCATAACTGGTGACCCGAAAGATAAACACTCATCATTATATCATCCCATACTACCTATTACTTATTACACAAATATTTACAAATATCTACAATGTAATTAAACCACTCGAACAAAACAGACACACAACACTCACCTATCACAACGCATCACATTGTAAACAATCATTCCCTCACTGGCCACACCCAATGGACATGGTCACCCACCAGTAAACCTG---AACAACAACAACAACAACAACAACAACAATAAAACAAACTCCAATATTAACATTATCATTATTCAGCATCATTTCAGTTCATTTCAAACTGATTACACAATGTAGGTAACACATCATATACTCAAACATAGAAAAACACATACATGCACATCAACGCATATAATCACACACTCACCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCTGACAAAGCAAAAACACATTAAAACACAGTGTAAATATCTCTTCTCCAAATACAATTACAATTTGTCAAACACAATCAATCACAGTCCCAACACTAGTTTGCACAAAATCAGAACTCGGCGAATCAGCACAACTGCATATTTCTCAGTTCGCCCGTCGCCTTCTCATTCATCATCTATCTTCTTACCAACATTATCAGCATACACAC]
[-] EMBL CD111379 [CACTCAACCTGTCTACAAAAATATCTATATCAGACATATAGAACTTGTAATCACACGGACAGCGTCCACATCAGAGTCTGCCCTATGATTATCATCATTAATACTTTACACATATTATACTAATAACACCATCAATACACCATATATACTATACATTACGATTCAATAAAACAACATCTGCTTCATCATCTACTTACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACAAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTC ]
[-] EMBL CD158210 [ TATATCAGACACATAGAACTTGTAATCACACGGACAGCGTCCACATCAGAGTCTGCCCTATGATTATCATCATTAATATTTTACACATATTATACTAATAACACCATCAATACACCATATATACTATACATTACGATTCAATAAAACAACATCTGCTTCATCATCTACTTACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACT ]
[-] EMBL CD064770 [ TACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGAAATAACAACACAATAAAAATACAACACTATTAAATAAATTACAATCATTTCACATTATTATCACACCATCAATAACACACACAACACTCAAATCAGAGTTAAAAAGCTCGTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGATAGTGTTCATCATATTGCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACACATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAAT ]
[-] EMBL CD089455 [ CCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGAAATAACAACACAATAAAAATACAACACTATTAAATAAATTACAATCATTTCACATTATTATCACACCATCGATAACACACACAACACTCAAATCAGAGTTAAAAAGCTCATATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGATAGTGTTCACCATATTGCACCAATCA ]
[+] EMBL CD163907 [ TCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGAAATAACAACACAATAAAAATACAACACTATTAAATAAATTACAATCATTTCACATTATTATCACACCATCAATAACACACACAACACTCAAATCAGAGTTAAAAAGCTCGTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGATAGTGTTCATCATATTGCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACACATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAATTAATAACAAACACATGTAGTTAGCTCGCTCAACCAC TATTATATTCA ACAAGCCACACACACAAACAACACCCAGCATTAACAACAATGTTATACACACTCCTCAGTTGTACGCTGTCAACAGATGACANAGT ]
[-] EMBL CD118215 [ cgCAATAAAAATACAACACTATTAAATAAATTACAATCATTTCACATTATTATCACACCATCAATAACACACACAACACTCAAATCAGAGTTAAAAAGCTCGTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGATAGTGTTCATCATATTGCACCAATCACTCTCTATCACTCAGTCAAACACGCAAATAAACACATCAACAAATAACACATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCATCCAGTGTTTTATAAACTGCTTCGTGTCTAAACAATTAATAACAAACACATGTAGTTAGCTCGCTCAACCAC T ]
[+] EMBL CD156382 [ ATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAATTAATAACAAACACATGTAGTTAGCTCGCTCAACCAC TATTATATTCA ACAAGCCACACACACAAACAACACCCAGCATTAACAACAATGACATGCACACTCCTCAGTTGTACACTGTCAACAGATGACAAAGTCATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGCACCAACTCGCCCACTCACCTGATCTCTCAGTCGTCAC CGTCTATCGCTC CATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATC ]
[+] EMBL CD156299 [ ATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAATTAATAACAAACACATGTAGTTAGCTCGCTCAACCAC TATTATATTCA ACAAGCCACACACACAAACAACACCCAGCATTAACAACAATGACATGCACACTCCTCAGTTGTACACTGTCAACAGATGACAAAGTCATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGCACCAACTCGCCCACTCACCTGATCTCTCAGTCGTCAC CGTCTATCGCTC CATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATC ]
[-] EMBL CD144294 [ ATGTAGTTAGCTCGCTCAACCAC TATTATA TCA ACAAGCCACACACACAANCAACACCCAGCATTAACAACAATGACATGCACACTCCTCAGTTGTACACTGTCAACAGATGACAAAGTCATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGCACCAACTCGCCCTCTCACCTGATCTCTCAGTCGCCAC CGTCTATCGCTC CATTCCACAACAAGTTCAGTTCCTGCGAAAACAG ]
[-] EMBL CD118026 [ AACCAC TATTATATTCA ACAAGCCACACACACAAGCAACACCCAGCATTAACAACAATGATATACACACTCTTCAGTTGTACACTGTCAACAGATGACAAAGTCATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGCACCAACT ]
[+] EMBL CD061316 [ AAACACATATTATATTCACACAAGCCACACACACAAACAACACCCAGCATTAACAACAATGACTTGCACACTCCTCAGTTGTACACTGTCAACAGATGACAAAGTCATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTC ]
[-] EMBL CD163849 [ tCTGATATCTCAGTAGTCAC CGTCTATCGCTC CATTTCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCATTCACGTTCAACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTACAAATATACAACAACAACAAAAACATTTTAACATACAATTCACCCAACACTGATTTTCTTACGCACACCGGTCAGTCAGATGTCAACTCACACCATAACTGGTGACCCGAAAGATAAACACTCATCATTATATCATCCCATACTACCTATTACTTATTACACAAATATTTACAAATATCTACAATGTAATTAAACCACTCGAACAAAACAGACACACAACACTCACCTATCACAACGCATCACATTGTAAACAATCATTCCCTCACTGGCCACACCCA ]
[+] EMBL CD094406 [ aaattacaaCACACATCACTCACTCATCA TCCACTAC TCA CCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCATTCACGTTCAACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTACAAATATACAACAACAACAAAAACATTTTAACATACAATTCACCCAACACTGATTTTCTTACGCACACCGGTCAGTCAGATGTCAACTCACACCATAACTGGTGACCCGAAAGATAAACACTCATCATTATATCATCCCATACTACCTATTACTTATTACACAAATATTTACAAATATCTACAATGTAATTAAACCACTCGAACAAAACAGACACA ]
[-] EMBL CD181888 [ C CGTCTATCGCTC CATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCATTCACGTTCAACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTACAAATATACAACAACAACAAAAACATTTTAACATACAATTCACCCAACACTGATTTTCTTA ]
[+] EMBL CD086600 [ cacacTCACTCATCA TCCACTAC TCA CCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCATTCACGTTCAACTCCACATCATCAGCTCTTTCACTGGACGACTATCACACATCTACAAATATACAACAACAACAAAAACATTTTAACATACAATTCACCCAACACTGATTTTCTT ]
[-] EMBL CD179904 [ AAGTTCAGTTCCTGCGAAAACAGTGCNCAATCATCAATCAGAAGTCTCCACAGTCTCCATTCACGTTCAACTCCACATCATCAGCTCACTCACTGGACGACTATCACACATCTACAAATATACAACAACAACAAAAACATTTTAACATACAATTCACCCAACACTGATTTTCTTACGCACACCGGTCAGTCAGATGTCAACTCACACCATAACTGGTGACCCGAAAGATAAACACTCAT ]
[+] EMBL CD147318 [ tctcTCACGTTCAACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTACAAATATACAACAACAACAAAAACATTTTAACATACAATTCACCCAACACTGATTTTCTTACGCACACCGGTCAGTCAGATGTCAACTCACACCATAACTGGTGACCCGAAAGATAAACACTCATCATTATATCATCCCATACTACCTATTACTTATTACACAAATATTTACAAATATCTACAATGTAATTAAACCACTCGAACAAAACAGACACTCAACACTCACCTATCACAACGCATCACATTGTAAACAATC ]
[-] EMBL CD191640 [ TCATCAGCTCATTCACTGGACGACTATCACACATCTACAAATATACAACAACAACAAAAACATTTTAACATACAATTCACCCAACACTGATTTTCTTACGCACACCGGTCAGTCAGATGTCAACTCACACCATAACTGGTGACCCGAAAGATAAACACTCATCATTATATCATCCCATACTACCTATTACTTATTACACAAATATTTACAAATATCTACAATGTAATTAAACCACTCGAACAAAACAGACACACAACACTCACCTATCACAACGCATCACATTGTAAACAATCATTCCCTCACTGGCCACACCCAATGGAGATGGTCACCCACCAGTAAACCTGAACAACAACAACAACAACAACAACAACAACAATAAAACAAACTCCAATATTAACATTATCATTATTCAGCATCATTTCAGTTCATTTCAAACTGATTACACAATGTAGGTAACACAT ]
[-] EMBL CD154085 [ CTACAATGTAATTAAACCACTCGAACAAAACAGACACACAACACTCACCTATCACAACGCATCACATTGTAAACAATCATTCCCTCACTGGCCACACCCAATGGACATGGTCACCCACCAGTAAACCTG AACAACAACAACAACAACAACAACAACAATAAAACAAACTCCAATATTAACATTATCATTATTCAGCATCATTTCAGTTCATTTCAAACTGATTACACAATGTAGGTAACACATCATATACTCAAACATAGAAAAACACATACATGCACATCAACGCATATAATCACACACTCACCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCTGACAAAGCAAAAACACATTAAAACACAGTGTAAATATCTCTTCTCCAAATACAATTACAATTTGTCAAACACAATCAATCACAGTCCCCACACTAGTTTGCACAAAATCAGAACTCGGCGAATCAGCACAACTGCATATTTCTCAGTTCGCCCGTCGCCTTCTCATTC ]
[-] EMBL CD153829 [ AAACCACTCGAACAAAACAGACACACAACACTCACCTATCACAACGCATCACATTGTAAACAATCATTCCCTCACTGGCCACACNCAATGGACATGGTCACCCACCAGTAAACCTG AACAACAACAACAACAACAACAACAATAAAACAAACTCCAATATTAACATTATCATTATTCAGCATCATTTCAGTTCATTTCAAACTGATTACACAATGTAGGTAACACATCATATACTCAAACATAGAAAAACACATACATGCACATCAACGCATATAATCACACACTCACCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCTGACAAAGCAAAAACACATTAAAACACAGTGTAAATATCTCTTCTCCAAATACAATTACAATTTGTCAAACACAATCAATCACAGTCCCAACACTAGTTTGCACAAAATCAGAACTCGGCGAATCAGCACAACTGCATATTTCTCAGTTCGCCCGTCGCCTTCTCATTC ]
[-] EMBL CD114075 [ AACATTATCATTATTCAGCATCATTTCAGTTCATTTCAAACTGATTACACAATGTAGGTAACACATCATATACTCAAACATAGAAAAACACATACATGCACATCAACGCATGTAATCACACACTCACCCGGTTGGTTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCTGACAAAGCAAAAACACATTAAAACACAGTGTAAATATCTCTTCTCCAAATACAATTACAATTTGTCAAACACAATCAATCACAGTCCCAACACTAGTTTGCACAAAATCAGAACTCGGCGAATCAGCACAACTGCATATTTCTCAGTTCGCCCGTCGCCTTCTCATTC ]
[-] EMBL CD117978 [ TATTCAGCATCATTTCAGTTCATTTCAAACTGATTACACAATGTAGGTAACACATCATATACTCAAACATAGAAAAACACATACATGCACATCAACGCATATAATCACACACTCACCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCTGACAAAGCAAAAACACATTAAAACACAGTGTAAATATCTCTTCTCCAAATACAATTACAATTTGTCAAACACAATCAATCACAGTCCCAACACTAGTTTGCACAAAATCAGAACTCGGCGAATCAGCACAACTGCATATTTCTCAGTTCGCCCGTCGCCTTCTCATTCA ]
[-] EMBL CD127736 [ ATACTCAAACATAGAAAAACACATACATGCACATCAACGCATATAATCACACACTCACCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCTGACAAAGCAAAAACACATTAAAACACAGTGTAAATATCTCTTCTCCAAATACAATTACAATTTGTCAAACACAATCGATCACAGTCCCAACACTAGTTTGCACAAAATCAGAACTCGGCGAATCAGCACAACTGCATATTTCTCAGTTCGCCCGTCGCCTTCTCATTCATCATCTATCTTCTTACCAACATTATCAGCATACACAC]
[-] EMBL CD115809 [ TCAACGCATATAATCACACACTCACCCGGTTGATTAATCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGATCGGTCACGCACCTGACAAAGCAAAAACACATTAAAACACAGTGTAAATATCTCTTCTCCAAATACAATTACAATTTGTCAAACACAATCAATCACAGTCCCAACA ]
consensusID : consensus_11020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[CTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAATTAATAACAAACACATGTAGTTAGCTCGCTCAACCACTATTATATTCAACAAGCCACACACACAAACAACACCCAGCATTAACAACAATGACATGCACACTCCTCAGTTGTACACTGTCAACAGAGGACAAAGTCATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGCACCAACTCGCCCACTCACCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCATTCACGTTCAACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTATCACAACGCATCACAATTGTAAACAATCA]
[-] EMBL CD147406 [CTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAATTAATAACAAACACATGTAGTTAGCTCGCTCAACCACTATTATATTCAACAAGCCACACACACAAACAACACCCAGCATTAACAACAATGACATGCACACTCCTCAGTTGTACACTGTCAACAGAGGACAAAGTCATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGCACCAACTCGCCCACTCACCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCATTCACGTTCAACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTATCACAACGCATCACAATTGTAAACAATCA]
consensusID : consensus_11020#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[CATTCTACAAATTATACAACAACAACAAAAACATTTTTACATACAATTTCACTCAACACTGATTTATCTTACGCACACCGGTCAGTCAGATTGTCAACTCACACCATAACTGGTGACCCGAAAGATTAAACACTCATCATTTATATCATCCCATACTACCTATTACTTATTACACAAATATTTTACAAATATTCTACAATGTAATTTAAACCACTCGAACAGAACAGACACACAACACTCACCTATCACAACGCATCACATTGTCCGTGTCGGG]
[-] EMBL CD150680 [CATTCTACAAATTATACAACAACAACAAAAACATTTTTACATACAATTTCACTCAACACTGATTTATCTTACGCACACCGGTCAGTCAGATTGTCAACTCACACCATAACTGGTGACCCGAAAGATTAAACACTCATCATTTATATCATCCCATACTACCTATTACTTATTACACAAATATTTTACAAATATTCTACAATGTAATTTAAACCACTCGAACAGAACAGACACACAACACTCACCTATCACAACGCATCACATTGTCCGTGTCGGG]
consensusID : consensus_11020#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence
[NNNNNNNNNNNNNNNNGGTAACGATCACATTTATTTGCCGAGTTTACTCAATTTTAAAGGCATGAAACTTCTAAGAATGTTAACAGGCCTTCGAAATCGTTCATCACAGAGAATATATGGTAAGAGATACAGAAAATAGAAGTACAATATATTGAACCTTTCAGGAACAAAGAAAATGAGCTTTAAATGTTTTTTGTTCAATTAGTTGAGCATTGATCTGACACTCCCCATTACATGCAACTTAGG]
[+] EMBL AI394802 [NNNNNNNNNNNNNNNNGGTAACGATCACATTTATTTGCCGAGTTTACTCAATTTTAAAGGCATGAAACTTCTAAGAATGTTAACAGGCCTTCGAAATCGTTCATCACAGAGAATATATGGTAAGAGATACAGAAAATAGAAGTACAATATATTGAACCTTTCAGGAACAAAGAAAATGAGCTTTAAATGTTTTTTGTTCAATTAGTTGAGCATTGATCTGACACTCCCCATTACATGCAACTTAGG]
consensusID : consensus_11020#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 109 fasta sequence
[GCAAAGGTGGCAAAGGCGGCAAAGGTGGCACTTACAAACCCAGCCATTATGGAGGCGGTTACTGAGGCACCAGTTGAGTTGTGGATCATTCTAATTTGTTTGTGTCACA]
[+] EMBL CD168079 [GCAAAGGTGGCAAAGGCGGCAAAGGTGGCACTTACAAACCCAGCCATTATGGAGGCGGTTACTGAGGCACCAGTTGAGTTGTGGATCATTCTAATTTGTTTGTGTCACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11020#0 CACTCAACCTGTCTACAAAAATATCTATATCAGACATATAGAACTTGTAATCACACGGAC 60
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 AGCGTCCACATCAGAGTCTGCCCTATGATTATCATCATTAATACTTTACACATATTATAC 120
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 TAATAACACCATCAATACACCATATATACTATACATTACGATTCAATAAAACAACATCTG 180
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 CTTCATCATCTACTTACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGAT 240
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 GGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCAC 300
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 TAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGAAATA 360
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 ACAACACAATAAAAATACAACACTATTAAATAAATTACAATCATTTCACATTATTATCAC 420
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 ACCATCAATAACACACACAACACTCAAATCAGAGTTAAAAAGCTCGTATACACACACTCA 480
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 TCATTGTCCATACTCAAAGTTGGATCTGATAGTGTTCATCATATTGCACCAATCACTCTC 540
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 TATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACACATATCCTTCACTTAC 600
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 CATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTC 660
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 CTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAATTAATAACAAACACATGTAGTTAG 720
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 CTCGCTCAACCACTATTATATTCAACAAGCCACACACACAAACAACACCCAGCATTAACA 780
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 ACAATGACATGCACACTCCTCAGTTGTACACTGTCAACAGATGACAAAGTCATCAGTCGA 840
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 AAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGCACCAACTCG 900
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 CCCACTCACCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGT 960
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 TCCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCATTCACGTTCA 1020
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 -------CTCCAGTGTTTTATTCACTGCTTCGTGTCTAAACAATTAATAACAAACACATG 53
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 ACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTACAAAT-ATACAACAA 1079
consensus_11020#2 -------------------------------------CAT-TCTACAAATTATACAACAA 22
consensus_11020#1 TAGTTAGCTCGCTCAACCACTATTATATTCAACAAGCCACACACACAAACAACACC-CAG 112
consensus_11020#4 --------------------------------------------GCAAAG---GTGGCAA 13
consensus_11020#3 ---------------------------------------------NNNNN---NNNNNNN 12
consensus_11020#0 CAACAAAAACATTTTAACATACAATT--CACCCA-ACACTGATTT-TCTTACGCACACCG 1135
consensus_11020#2 CAACAAAAACATTTTTACATACAATTT-CACTCA-ACACTGATTTATCTTACGCACACCG 80
consensus_11020#1 CATTAACAACAATGACATGCACACTCCTCAGTTGTACACTG-TCAACAGAGGACAAAGTC 171
consensus_11020#4 AGGCGGCAAAGGTGGCACTTACAAACC-CAGC----CATTATGGAGGCGGTTACTGAGGC 68
consensus_11020#3 NNNNGGTAACGATCACATTTATTTGCC-GAGTTT-ACTCAATTTTAAAGGCATGAAACTT 70
** * * * * * *
consensus_11020#0 GTCAGTC---AGAT-GTCAACTCACACCAT------AACTGGTGACCCGAAAGAT-AAAC 1184
consensus_11020#2 GTCAGTC---AGATTGTCAACTCACACCAT------AACTGGTGACCCGAAAGATTAAAC 131
consensus_11020#1 ATCAGTCGAAAGATGGTTCATTGACATCATTACACCAATATGTGCTCCATAACACAATGC 231
consensus_11020#4 ACCAGTTGAGTTGTGGATCATTCTAATT--------TGTTTGTGTCACA----------- 109
consensus_11020#3 CTAAGAATGTTAACAGGCCTTCGAAATCGTTCA--TCACAGAGAATATATGGTAAGAGAT 128
** * *
consensus_11020#0 ACTCAT-----CATT-ATATCATCCCATACTACCTATTACTTATTACACAAATATTT-AC 1237
consensus_11020#2 ACTCAT-----CATTTATATCATCCCATACTACCTATTACTTATTACACAAATATTTTAC 186
consensus_11020#1 ACCAACTCGCCCACTCACCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAAC 291
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ACAGAAA-ATAGAAGTACAATATATTGAACCTTTCAGGAACAAAGAAAATGAGCTTTAAA 187
consensus_11020#0 AAATA----T-CTAC-AATGTAATT-AAACCACTCGAACAAAA---CAGACACACAACAC 1287
consensus_11020#2 AAATA----TTCTAC-AATGTAATTTAAACCACTCGAACAGAA---CAGACACACAACAC 238
consensus_11020#1 AAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATCAGAAGTCCCCACAGTCTCCAT 351
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 TGTTTTTTGTTCAATTAGTTGAGCATTGATCTGACACTCCCCATTACATGCAACTTAGG- 246
consensus_11020#0 TCACCTATCACAACGCATCACATTGTAAACAATCATTCCCTCACTGGCCACACCCAATGG 1347
consensus_11020#2 TCACCTATCACAACGCATCACATTGTCCGTGTCGGG------------------------ 274
consensus_11020#1 TCACGTTCAACTCCACATCATCAGCTCATTCACTGGACGACTATCACACATCTATCACAA 411
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 ACATGGTCACCCACCAGTAAACCTGAACAACAACAACAACAACAACAACAACAATAAAAC 1407
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 CGCATCACAATTGTAAACAATCA------------------------------------- 434
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 AAACTCCAATATTAACATTATCATTATTCAGCATCATTTCAGTTCATTTCAAACTGATTA 1467
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 CACAATGTAGGTAACACATCATATACTCAAACATAGAAAAACACATACATGCACATCAAC 1527
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 GCATATAATCACACACTCACCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGC 1587
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 ACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCTGACAAAGC 1647
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 AAAAACACATTAAAACACAGTGTAAATATCTCTTCTCCAAATACAATTACAATTTGTCAA 1707
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 ACACAATCAATCACAGTCCCAACACTAGTTTGCACAAAATCAGAACTCGGCGAATCAGCA 1767
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 CAACTGCATATTTCTCAGTTCGCCCGTCGCCTTCTCATTCATCATCTATCTTCTTACCAA 1827
consensus_11020#2 ------------------------------------------------------------
consensus_11020#1 ------------------------------------------------------------
consensus_11020#4 ------------------------------------------------------------
consensus_11020#3 ------------------------------------------------------------
consensus_11020#0 CATTATCAGCATACACAC 1845
consensus_11020#2 ------------------
consensus_11020#1 ------------------
consensus_11020#4 ------------------
consensus_11020#3 ------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||