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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1403 fasta sequence
[TAGTGGTAGTAATAGTAGACATTGTCATTTCATTTAGTTGTAAGCATTGTGTTGTCTGTTTGTGTGAGGGCAGGCAACAATTATTATCATTATTACCGTTGTAATTATTTTATGAAAAGCTAAATACAACAATTAATCCTACTGTTACTACCGAAAAACTATGGTGGCTAAAGATTTCATTGAACTTTTCGCAAAATTCAACTATGCTAATCGTGTTGCAGTTGAAGATTTCTCAGATCGATTGAGCTTATTTACGGTAGTTTTATTCTTGATCGCTTGTATAATTGTATCGGCCAAACAATATTTTCTAAATTCAATCTCATGTTATATTCCTGTTAAACCGACTGGTGAAAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG-CAGGCTGTATGCGCCCATAGATCCGGTGGAG-ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAA-TTATATATTTTTCTGGTTTTGGATCTGTTTCCTCATAGCTGCCAGTATATTTAGTTTACTACTATGGTTAGTAAGAATGGTTATTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGAT]
[+] EMBL CD180962 [TAGTGGTAGTAATAGTAGACATTGTCATTTCATTTAGTTGTAAGCATTGTGTTGTCTGTTTGTGTGAGGGCAGGCAACAATTATTATCATTATTACCGTTGTAATTATTTTATGAAAAGCTAAATACAACAATTAATCCTACTGTTACTACCGAAAAACTATGGTGGCTAAAGATTTCATTGAACTTTTCGCAAAATTCAACTATGCTAATCGTGTTGCAGTTGAAGATTTCTCAGATCGATTGAGCTTATTTACGGTAGTTTTATTCTTGATCGCTTGTATAATTGTATCGGCCAAACAATATTTTCTAAATTCAATCTCATGTTATATTCCTGTTAAACCGACTGGTGAAAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGC ]
[+] EMBL BF936803 [ TTCATTTAGTTGTAAGCATTGTGTTGTCTGTTTGTGTGAGGGCAGGCAACAATTATTATCATTATTACCGTTGTAATTATTTTATGAAAAGCTAAATACAACAATTAATCCTACTGTTACTACCGAAAAACTATGGTGGCTAAAGATTTCATTGAACTTTTCGCAAAATTCAACTATGCTAATCGTGTTGCAGTTGAAGATTTCTCAGATCGATTGAGCTTATTTACGGTAGTTTTATTCTTGATCGCTTGTATAATTGTATCGGCCAAACAATATTTTCTAAATTCAATCTCATGTTATATTCCTGTTAAACCGACTGGTGAAAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCCAGGCTGTATGCGCCCATAGATCCGGTGGAGAATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCGATTTCTGAACGTGGTTCCCGTAAGAGTCAAt ]
[-] EMBL CD191868 [ TATCGGCCAAACAATATTTTCTAAATTCAATCTCATGTTATATTCCTGTTAAACCGACTGGTGAAAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAGGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAA ]
[+] EMBL CD152380 [ AACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTGAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTA ]
[+] EMBL CD152278 [ AACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTCCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTCGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTTAAATCATA ]
[+] EMBL CD192459 [ AATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAA ]
[-] EMBL CD192161 [ ATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAA ]
[-] EMBL CD192102 [ ATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAA ]
[-] EMBL CD117144 [ AG ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACA ]
[-] EMBL CD116976 [ AG ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTCCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACA ]
[+] EMBL CD164466 [ TTTGTTCGCTCTTGTGAAAGCCGCTGCTGGTGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTGACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTA ]
[+] EMBL CD063447 [ TGATGGTCATAAGGATTGTCCCCATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAAAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTC ]
[+] EMBL CD066959 [ TGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTATCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAGAATGAAGATTTAGAACGTTTCGGATTCGGATTAACTGTTGCCAACCATATACG ]
[-] EMBL CD152228 [ AATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGATTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAA TTATATATTTTTCTGGTTTT ]
[+] EMBL CD095681 [ CTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGGTTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGTTT ]
[-] EMBL CD146796 [ AATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGTTTT ]
[+] EMBL CD117855 [ CCATACGAAACTAACTGGGCGGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGACTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGTTTTGGATCTGTTTCCT ]
[+] EMBL CD066941 [ TTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGGTTTGGATCTGTTTCCCCATAGCTGCCAGTATATTTAGTTTACTACTATGGTTAGTAAGAATGGTTATTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGAT]
[+] EMBL CD178817 [ TTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGTTTTGGATCTGTTTCCTCATAGCTGCCAGTATATTTAGTTTACTACTATGGTTAGTAAGAATGGTTATTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCA ]
consensusID : consensus_11021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1009 fasta sequence
[CCAGGCCANAATTCGGCACGAGGTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGATCACATCTGAAATTGTTATGGCTTTATATGAACATTACATTGATAATGTTTATTCAGTGGATAATACCCCACAGAAAAGTCTAGAGAAAGAACCATTGAAAGATGGATCAGGTATACCATCAAATTATGTGTAAAGTTATTCTTGTGTCCTCTCCTATATATGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAGTATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTA---------CTGATTTCAAATGCCTTACTTTTATAATGGTTTTTTTAGCTTTTATTATTATTATTATTACTATTAGNAATACTCTTGTCAACTAGTTTTTAGCCAGTATGTACGTGAAGATCTGGATTTGATCGACCTGTTTTGAAATTGTGCCTATTCCTTCTTTTTATAATAATTTTTTTGTATTACTATTACTACATAGTACTATTTTTATTGTCATTATTATCATTGCTAAGATGCCTACTACTAATTACTATTATTATTATTATTTTTATGGTTCGTATCTATCTTCTTTTAAAACCAACAATTTAATTGTACTGAAATGATTGCAATCCTGACAATTTTTACACTTTTGTGACGATTAATACAAATAAATGAATCTG]
[+] EMBL CD082612 [CCAGGCCANAATTCGGCACGAGGTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGATCACATCTGAAATTGTTATGGCTTTATATGAACATTACATTGATAATGTTTATTCAGTGGATAATACCCCACAGAAAAGTCTAGAGAAAGAACCATTGAAAGATGGATCAGGTATACCATCAAATTATGTGTAAAGTTATTCTTGTGTCCTCTCCTATATATGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAGTATCTTACTATGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTA CTGATTTCAAATGCCTTACTTTTATAATGGTTNTTTTAGCTNNTATTATTATTATTATTACTATTAGNA ]
[-] EMBL CD066873 [ AGTACGTATGCTGGCCATCAACGCTGGTGATGTGATCACATCTGAAATTGTTATGGCTTTATATGAACATTACATTGATAATGTTTATTCAGTGGATAATACCCCACAGAAAAGTCTAGAGAAAGAACCATTGAAAGATGGATCAGGTATACCATCAAATTATGTGTAGAGTTATTCTTGTGTCCTCTCCTATATATGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAGTATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTAC ]
[-] EMBL CD140587 [ CATTGAAAGATGGATCAGGTATACCATCAAATAATGTGTAAACTTATTCTTGTGTCCTCTCCTATATATGTGTATTTTTCATTCTTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAGTATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGATTATTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTCTAGAATTTCTTCCCACTTTTGTATGGTGTAATTATTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTACTACTACTGCTGATTTCAAATGCCTTACTTTTATAATGGTTTTTTTAGCTTTTATTATTATTATTATTACTA ]
[+] EMBL SMAA69088 [ TGTGTCCTCTCCTATATATGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAG ATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGAT ]
[-] EMBL CD076206 [ CTTAGCAAGGAGGTGTACAACACAAAATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTA CTGATTTCAAATCCCTTACTTTTATAATGGTTTTTTTAGCTTTTATTATTATTATTATTACTATTAGTAATACTCTTGTCAACTAGTTTTTAGCCAGTATGTACGTGAAGATCTGGATTTGATCGACCTGTTTTGAAATTGTGCCTATTCCTTCTTTTTATAATAATTTTTTTGTATTACTATTACTACATAGTACTATTTTTATTGTCATTATTATCATTGCTAAGATGCCTACTACTAATTACTATTATTATTATTATTTTTATGGTTCGTATCTATCTTCTTTTAAAACCAACAATTTAATTGTACTGAAATGATTGCAATCCTGACAATTTTTACACTTTTGTGACGATTAATACAAATAAATGAATCTG]
[+] EMBL SM734 [ TATTGTATTATGGTGGTNGTTTGCACAGNTTAGAATTTCTTCCCACTTTGGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTA CTGATTTCAAATGCCTTACTTTTATAATGGTTTNNTTAGCTTTNATTATTATTATNATTACTATTAGGAATACTCTGGTCAACTAGTTTTNAGACAGNATGTACGTGAAGATCTGGATTg ]
consensusID : consensus_11021#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 629 fasta sequence
[TGAGGATTTTTCCGATCGTCTTAACTTATTTACAGTTGTTTTATTCCTCTTATCATGTTTAATTGTGTCAACAAAACAATATTTTATGAGTTCGATCTCATGTTATATTCCGGTAAAGCCTACGGGCGATAATTTTAATGCTTATCTTACTGATTATTGTTGGGTACATGGTACAATTCCTCTGAGGCCAGATGAAAAATTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTC]
[-] EMBL CD061706 [TGAGGATTTTTCCGATCGTCTTAACTTATTTACAGTTGTTTTATTCCTCTTATCATGTTTAATTGTGTCAACAAAACAATATTTTATGAGTTCGATCTCATGTTATATTCCGGTAAAGCCTACGGGCGATAATTTTAATGCTTATCTTACTGATTATTGTTGGGTACATGGTACAATTCCTCTGAGGCCAGATGAAAAATTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTC ]
[+] EMBL CD158520 [ GATTTTTCCGATCGTCTTAACTTATTTACAGTTGTTTTATTCCTCTTATCATGTTTAATTGTGTCAACAAAACAATATTTTATGAGTTCGATCTCATGTTATATTCCGGTAAAGCCTACGGGCGATAATTTTAATGCTTATCTTACTGATTATTGTTGGGTACATGGTACAATTCCTCTGAGGCCAGATGAAAAATTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCG ]
[+] EMBL CD147642 [ TTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTC]
consensusID : consensus_11021#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[GTTATGAATCTGTTTCACCATCAGGGACAGGGTTTGATACATTTCTAGTTAATTACTGTTGGGTTCATGGAACTATTCCATTGAGAAATAATGAACCTTTGCCAGAAACAGATGCTCAATGGAAAGAATATGATATACATAGAAGGATCACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCTGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACT]
[-] EMBL CD178204 [GTTATGAATCTGTTTCACCATCAGGGACAGGGTTTGATACATTTCTAGTTAATTACTGTTGGGTTCATGGAACTATTCCATTGAGAAATAATGAACCTTTGCCAGAAACAGATGCTCAATGGAAAGAATATGATATACATAGAAGGATCACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCTGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 TAGTGGTAGTAATAGTAGACATTGTCATTTCATTTAGTTGTAAGCATTGTGTTGTCTGTT 60
consensus_11021#1 ---CCAGGCCANAATTCGGCACGA--GGTGCACCAAGGCGTAAAGATTTTATTAAACGTT 55
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 TGT-GTGAGGGCAGGCAACAATTATTATCATTATTACCGTTGTAATTATTTTATGAAAAG 119
consensus_11021#1 TCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAG 115
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 CTAAATACAACAATTAATCCTACTGTTACTACCGAAAAACTATGGTGGCTAAAGATTTCA 179
consensus_11021#1 ACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCA 175
consensus_11021#2 -------------------------------------------TGAGGATTTTTCCGATC 17
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 TTGAACTTTTCGCAAAATTCAACTATGCTAATCGTGTTGCAGTTGAAGATTTCTCAGATC 239
consensus_11021#1 TCAACGCTGGTGATGTGATCACATCTGA-AATTGTTATGGCTTTATATGAACATTACATT 234
consensus_11021#2 GTCTTAACTTATTTACAGTTGTTTTATTCCTCTTATCATGTTTAATTGTGTCAACAAAAC 77
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 GATTGAGCTTATTTACGGTAGTTTTATTCTTGATCGCTTGTATAATTGTATCGGCCAAAC 299
consensus_11021#1 GATAATGTTTATTCAGTGGATAATACCCCACAGAAAAGTCTAGAGAAAGAACCATTGAAA 294
consensus_11021#2 AATATTTTATGAGTTCGATC---TCATGT-TA----TATTCCGGTAAAGCCTACGGGCGA 129
consensus_11021#3 ---------------------------GT-TA----TGAATCTGTTTCACCATCAGGGAC 28
consensus_11021#0 AATATTTTCTAAATTCAATC---TCATGT-TA----TATTCCTGTTAAACCGACTGGTGA 351
consensus_11021#1 GATGGATCAGGTATACCATCAAATTATGTGTAAAGTTATTCTTGTGTCCTCTCCTATATA 354
** ** * ** * *
consensus_11021#2 TAATTTTAATGCTTATCTTACTGATTATTGTTGGGTACATGGTACAATTCCTCTGAGGCC 189
consensus_11021#3 AGGGTTTGATACATTTCTAGTTAATTACTGTTGGGTTCATGGAACTATTCCATTGAGAAA 88
consensus_11021#0 AAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACC 411
consensus_11021#1 TGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATT 414
* * * * * * *** * * ** ** * * *
consensus_11021#2 AGATGAAAAATTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTAT 249
consensus_11021#3 TAATGAACCTTTGCCAGAAACAGATGCTCAATGGAAAGAATATGATATACATAGAAGGAT 148
consensus_11021#0 TGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTAT 471
consensus_11021#1 ACAAACAATAGTAATAGTATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAA 474
* * * * * * * * *
consensus_11021#2 AACCTATTATCAGTGGGTCCCATTTGTTC--TCGGGCTGCAATGTATATTTTTCTACATT 307
consensus_11021#3 CACCTATTATCAGTGGGTCCCATTTGTTC--TCGGGCTGCAATGTATATTTTTCTACATT 206
consensus_11021#0 AACCTATTATCAGTGGGTCCCATTTGTTC--TCGGGCTGCAATGTATATTTTTCTACATT 529
consensus_11021#1 AATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATT 534
* *** * * * ** * ** * *** * ** * * ***
consensus_11021#2 CCACATATTGCATG-GCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCT 366
consensus_11021#3 CCACATATTGCATG-GCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCT 265
consensus_11021#0 CCACATATTGCATG-GCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCT 588
consensus_11021#1 ATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTA 594
* *** ** *** * * * * ** * ** ** *
consensus_11021#2 TGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAA 426
consensus_11021#3 TGTGAAAGCCGCTGCTGATGCTGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAA 325
consensus_11021#0 TGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAA 648
consensus_11021#1 TCAACGAAACTGTACCACTTTTACTACTACTACTACTACTACTGATTTCAAATGCCTTAC 654
* * * * * * * * * ** * * * * * ***
consensus_11021#2 ACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCG 486
consensus_11021#3 ACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCG 385
consensus_11021#0 ACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCG 708
consensus_11021#1 TTTTATAATGGTTTTTTTAGCTTTTATTATT-ATTATTATTACTATTAGNAATACTCTTG 713
* * * ***** * *** *** ** * ** * *** * * * *
consensus_11021#2 TCGGATGAATTT-AACTAG-ACGTGCAT-ATGACATGTGTGGTATATGTGTTGTTAGTAA 543
consensus_11021#3 TCGGATGAATTT-AACTAG-ACGTGCAT-ATGACATGTGTGGTATATGTGTTGTTAGTAA 442
consensus_11021#0 TCGGATGAATTT-AACTAG-ACGTGCAT-ATGACATGTGTGGTATATGTGTTGTTAGTAA 765
consensus_11021#1 TCAACTAGTTTTTAGCCAGTATGTACGTGAAGATCTGGATTTGATCGACCTGTTTTGAAA 773
** * *** * * ** * ** * * * ** ** * ** * ** * **
consensus_11021#2 ACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACA-ATTATCA 602
consensus_11021#3 ACGACT------------------------------------------------------ 448
consensus_11021#0 ACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACA-ATTATCA 824
consensus_11021#1 TTGTGCCTATTCCTTCTTTTTATAATAATTTTTTTGTATTACTATTACTACATAGTACTA 833
*
consensus_11021#2 ATGCAATTAT-GCAAGTATATTTGATTC-------------------------------- 629
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 ATGCAATTAT-GCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGT 883
consensus_11021#1 TTTTTATTGTCATTATTATCATTGCTAAGATGCCTACTACTAATTACTATTATTATTATT 893
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 GCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCG 943
consensus_11021#1 ATTTTTATGGTTCGTATCTATCTTCTTTTAAAACCAACAATTTAATTG-TACTGAAATGA 952
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 ATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAAC 1003
consensus_11021#1 TTGCAATCCTGACAATTTTTACACTTTTGTGACGATTAATACAAATAAATGAATCTG--- 1009
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 CATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGT 1063
consensus_11021#1 ------------------------------------------------------------
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 CGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTA 1123
consensus_11021#1 ------------------------------------------------------------
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 CCTATAAATATGTTAAACGAGAAAATTATATATTTTTCTGGTTTTGGATCTGTTTCCTCA 1183
consensus_11021#1 ------------------------------------------------------------
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 TAGCTGCCAGTATATTTAGTTTACTACTATGGTTAGTAAGAATGGTTATTGCACCAAGGC 1243
consensus_11021#1 ------------------------------------------------------------
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 GTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGG 1303
consensus_11021#1 ------------------------------------------------------------
consensus_11021#2 ------------------------------------------------------------
consensus_11021#3 ------------------------------------------------------------
consensus_11021#0 AGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTAT 1363
consensus_11021#1 ------------------------------------------------------------
consensus_11021#2 ----------------------------------------
consensus_11021#3 ----------------------------------------
consensus_11021#0 TTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGAT 1403
consensus_11021#1 ----------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||