cluster # 11029

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Schistosoma mansoni
cluster # 11029 cluster # 11029 Sequences # 29 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11029#0 length = 553 sequences # 25
consensus_11029#1 length = 550 sequences # 1

consensus_11029#2 length = 525 sequences # 1
consensus_11029#3 length = 221 sequences # 1
consensus_11029#4 length = 124 sequences # 1

consensusID : consensus_11029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 25
consensus length = 553
fasta sequence

                              [TAACAATTTATTTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC-CAGGATTCCTGGCGTATG-CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA-TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA-TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA-TCATCCTCAAACGCTAGCGTGAAA-CTCA-GCAACAAGACGACTGACCCCGAATTATTGGCTCGGA]

[-] EMBL CD082736             [TAACAATTTATTTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA GCAACAAGAC CCTCGTGCCGAATTATTGGCTCGGA]
[-] EMBL AI976574             [TAAC ATTTATTNTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA GCAACAAGACGACTGA                    ]
[+] EMBL CD076327             [TAACAATTTATTTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA GCAACAAGA                           ]
[+] EMBL CD076619             [ AACAATTTATTTTGCTAGTATTAAAAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAAAAAACATATAAAATGAGGAAAGCCATCACTAAACAAAACAGACCCATTGCTTCACTCAAAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAAAAAATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGT                                              ]
[-] EMBL CD079288             [  ACAATTTATTNTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA GCAAC                               ]
[-] EMBL CD083042             [  ACAATTTATTNTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATT AATAAGGTAACTGGCA TCATCCTCAAACGCTAGCG                                               ]
[-] EMBL AI977039             [           TTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA                                     ]
[+] EMBL CD138496             [                                                            TATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCT                                                                                                                                                                                                                                                                            ]
[+] EMBL CD138451             [                                                                                    GATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGCCAAACTTCCAAATACAGATCCAATACCAGCACCT                                                                                                                                                                                                                                                                            ]
[+] EMBL CD160938             [                                                                                            ACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGA                                            ]
[-] EMBL CD161061             [                                                                                             CAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA CCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAA                                           ]
[-] EMBL CD111069             [                                                                                                      GTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA GCAACAAGACGACTGACC                  ]
[+] EMBL CD131084             [                                                                                                                ACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGC                                                                                       ]
[+] EMBL CD111295             [                                                                                                                ACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTCAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGG                                                                                                                                                 ]
[+] EMBL CD110855             [                                                                                                                ACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA GCAACAAGACGACTGAC                   ]
[-] EMBL CD148725             [                                                                                                                 CACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGT                                                                                                      ]
[-] EMBL CD110891             [                                                                                                                 CACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAACACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA GCAACAAGACGACTGACC                  ]
[-] EMBL CD143230             [                                                                                                                                     ATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACNCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTCGCTG TTTAGGCNCAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAGGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA                                          ]
[+] EMBL CD134943             [                                                                                                                                                                    AACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCT                                                                                                                                                                                                                            ]
[-] EMBL AA559733             [                                                                                                                                                                                           AGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATGCCCAAAGTCAAACTTCCAAATACAGACCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCCGCTTGATCAATATTCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGANTTCATGACATTTCATAAGTGTGGGTCTGAGGACCGCATTGAATAA                                                                              ]
[-] EMBL AA559439             [                                                                                                                                                                                                      GGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGACCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCCGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTNGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTTTTCATGACA TTCATAAGTGTGGGTNTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCC                                                            ]
[+] EMBL CD114953             [                                                                                                                                                                                                      GGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGC                                                ]
[+] EMBL CD115021             [                                                                                                                                                                                                      GGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGC                                                ]
[+] EMBL CD145134             [                                                                                                                                                                                                      GGATAGCGTAGGTAAACAGTTGCTGTTTTAGGC CAGGATTCCTGGCGTATG CCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCATTCGTGAACAAAC C  GAATGAAAGCAAATGAAACAAcc                           ]
[+] EMBL CD140999             [                                                                                                                                                                                                                                                                                    TCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAGTA TCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACA TTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCA TCATCCTCAAACGCTAGCGTGAAA CTCA GCAACAAGAC                          ]




>consensus_11029#0
TAACAATTTATTTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCA
TATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGT
ATCCTCAGAAAACATATAAAATGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTT
CACTCAGAGCGAAACCAAGGATAGCGTAGGTAAACAGTTGCTGTTTTAGGCCAGGATTCC
TGGCGTATGCCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCAC
ATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATATCTTTTCGGA
TAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTT
TGACAGTTGAAGTCTTCATGACATTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGG
TAACTGGCATCATCCTCAAACGCTAGCGTGAAACTCAGCAACAAGACGACTGACCCCGAA
TTATTGGCTCGGA

consensusID : consensus_11029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [TTTTTTTTTTTTTTTTTCAAGTCTATAACAATTTATTTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAAGACACAGGTATCCTCAGAAAACATATAAAATGAAGAAAGCCATCACTAGAACAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTATGTAAACAGTTGCTGTTTTAGGCCANGATTCCTGGCGTATGCCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATATCTTTTCGGATAAAAAATTATGGAATTGGCTCGTGGGGAANATACAGANACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACATTCATAAGTGTGGGTCTGAAAAGACGCATGAATAAGGTACTGGCATCATCCTCNAACGCTAACGTGAAAACCTCCGTGCCCGAA]

[+] EMBL AI394813             [TTTTTTTTTTTTTTTTTCAAGTCTATAACAATTTATTTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACAGGCCTAGGTACATGAAGACACAGGTATCCTCAGAAAACATATAAAATGAAGAAAGCCATCACTAGAACAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTATGTAAACAGTTGCTGTTTTAGGCCANGATTCCTGGCGTATGCCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATATCTTTTCGGATAAAAAATTATGGAATTGGCTCGTGGGGAANATACAGANACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACATTCATAAGTGTGGGTCTGAAAAGACGCATGAATAAGGTACTGGCATCATCCTCNAACGCTAACGTGAAAACCTCCGTGCCCGAA]




>consensus_11029#1
TTTTTTTTTTTTTTTTTCAAGTCTATAACAATTTATTTTGCTAGTATTAAGAGTGTCTAT
TATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACA
GGCCTAGGTACATGAAGACACAGGTATCCTCAGAAAACATATAAAATGAAGAAAGCCATC
ACTAGAACAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTATGTAAAC
AGTTGCTGTTTTAGGCCANGATTCCTGGCGTATGCCAAAGTCAAACTTCCAAATACAGAT
CCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTG
GCTGCTTGATCAATATCTTTTCGGATAAAAAATTATGGAATTGGCTCGTGGGGAANATAC
AGANACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACATTCATAAGTGTGGG
TCTGAAAAGACGCATGAATAAGGTACTGGCATCATCCTCNAACGCTAACGTGAAAACCTC
CGTGCCCGAA

consensusID : consensus_11029#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [CAATTTATTTGCTAGTATAAGAGTGTCTATNATCTGCACAATGACTTACATCCATAATCGGGCCAGCAATGTGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAATTGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAACAGTNTGCTGTTTTAGGCCAGGATTCCTGGCGTATGCCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATATCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACATTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCATCATCCTCAAACGCTAGCCCTCGGACCGAATTCTTGGCTGCGA]

[-] EMBL CD077973             [CAATTTATTTGCTAGTATAAGAGTGTCTATNATCTGCACAATGACTTACATCCATAATCGGGCCAGCAATGTGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAATTGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAACAGTNTGCTGTTTTAGGCCAGGATTCCTGGCGTATGCCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATATCTTTTCGGATAGAAGATGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACATTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGGCATCATCCTCAAACGCTAGCCCTCGGACCGAATTCTTGGCTGCGA]




>consensus_11029#2
CAATTTATTTGCTAGTATAAGAGTGTCTATNATCTGCACAATGACTTACATCCATAATCG
GGCCAGCAATGTGTTGGGATGGAAAACAGGCCTAGGTACATGAGGACACAGGTATCCTCA
GAAAACATATAAATTGAGGAAAGCCATCACTAGACAAAACAGACCCATTGCTTCACTCAG
AGCGAAACCAAGGATAGCGTAGGTAACAGTNTGCTGTTTTAGGCCAGGATTCCTGGCGTA
TGCCAAAGTCAAACTTCCAAATACAGATCCAATACCAGCACCTGATCCAGCACATCCAAC
AGTAGCCGCACCAGCACCAATGTATTTGGCTGCTTGATCAATATCTTTTCGGATAGAAGA
TGTATGGAATTGGCTCGTGGGGAAAATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGT
TGAAGTCTTCATGACATTCATAAGTGTGGGTCTGAGGACCGCATTGAATAAGGTAACTGG
CATCATCCTCAAACGCTAGCCCTCGGACCGAATTCTTGGCTGCGA

consensusID : consensus_11029#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [TATTTTTTTTTTTTTTTTTTTTAACAAGTCTATAACAATTTATTTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCACTGTGGATGGGATGGAAAACAGGCCTAGGTCCATGTGGACACAGGTATCCTCAGGAGGCATCAAACCTGAGGAAAGCCATCACTAGACAAATTACGTGCATTGCTTCACTCAGTT]

[+] EMBL AI395751             [TATTTTTTTTTTTTTTTTTTTTAACAAGTCTATAACAATTTATTTTGCTAGTATTAAGAGTGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCACTGTGGATGGGATGGAAAACAGGCCTAGGTCCATGTGGACACAGGTATCCTCAGGAGGCATCAAACCTGAGGAAAGCCATCACTAGACAAATTACGTGCATTGCTTCACTCAGTT]




>consensus_11029#3
TATTTTTTTTTTTTTTTTTTTTAACAAGTCTATAACAATTTATTTTGCTAGTATTAAGAG
TGTCTATTATCTGCACAATGGACTTACATCCATATTCGGACCAGCACTGTGGATGGGATG
GAAAACAGGCCTAGGTCCATGTGGACACAGGTATCCTCAGGAGGCATCAAACCTGAGGAA
AGCCATCACTAGACAAATTACGTGCATTGCTTCACTCAGTT

consensusID : consensus_11029#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 124
fasta sequence

                              [TCTTTTCGGATAGGAGATGTATGGAATTGGCTNGTGGGGAAAATACAGGNAACAGCTGCAGGAGAGAGNTTGACAGNTGAAGTTTTCNTGACATTCATAAGTGTGGGTTTGAGGACCGCATAGA]

[-] EMBL AA559734             [TCTTTTCGGATAGGAGATGTATGGAATTGGCTNGTGGGGAAAATACAGGNAACAGCTGCAGGAGAGAGNTTGACAGNTGAAGTTTTCNTGACATTCATAAGTGTGGGTTTGAGGACCGCATAGA]




>consensus_11029#4
TCTTTTCGGATAGGAGATGTATGGAATTGGCTNGTGGGGAAAATACAGGNAACAGCTGCA
GGAGAGAGNTTGACAGNTGAAGTTTTCNTGACATTCATAAGTGTGGGTTTGAGGACCGCA
TAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11029#2      ------------------------------CAATTTATTTGCTAGTATAAGAGTGTCTAT 30
consensus_11029#4      ------------------------------------------------------------
consensus_11029#0      -------------------------TAACAATTTATTTTGCTAGTATTAAGAGTGTCTAT 35
consensus_11029#1      TTTTTTTTTTTTTTTTTCAAGTCTATAACAATTTATTTTGCTAGTATTAAGAGTGTCTAT 60
consensus_11029#3      ------------------------------------------------------------
                                                                                   

consensus_11029#2      NATCTGCACAATG-ACTTACATCCATAATCGGGCCAGCAATGTG-TTGGGATGGAAAACA 88
consensus_11029#4      ------------------------------------------------------------
consensus_11029#0      TATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACA 95
consensus_11029#1      TATCTGCACAATGGACTTACATCCATATTCGGACCAGCAATGTGGTTGGGATGGAAAACA 120
consensus_11029#3      ------------------------------------------------------------
                                                                                   

consensus_11029#2      GGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAATTGAGGAAAGCCATC 148
consensus_11029#4      ------------------------------------------------------------
consensus_11029#0      GGCCTAGGTACATGAGGACACAGGTATCCTCAGAAAACATATAAAATGAGGAAAGCCATC 155
consensus_11029#1      GGCCTAGGTACATGAAGACACAGGTATCCTCAGAAAACATATAAAATGAAGAAAGCCATC 180
consensus_11029#3      ------------------------------------------------------------
                                                                                   

consensus_11029#2      ACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAACA 208
consensus_11029#4      ------------------------------------------------------------
consensus_11029#0      ACTAGACAAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTAGGTAAAC 215
consensus_11029#1      ACTAGAACAAACAGACCCATTGCTTCACTCAGAGCGAAACCAAGGATAGCGTATGTAAAC 240
consensus_11029#3      ------------------------------------------------------------
                                                                                   

consensus_11029#2      GTNTGCTGTTTTAGGCCAGGATTCCTGGCGTATGCCAAAGTCAAACTTCCAAATACAGAT 268
consensus_11029#4      ------------------------------------------------------------
consensus_11029#0      AGTTGCTGTTTTAGGCCAGGATTCCTGGCGTATGCCAAAGTCAAACTTCCAAATACAGAT 275
consensus_11029#1      AGTTGCTGTTTTAGGCCANGATTCCTGGCGTATGCCAAAGTCAAACTTCCAAATACAGAT 300
consensus_11029#3      ------------------------------------------------------------
                                                                                   

consensus_11029#2      CCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTG 328
consensus_11029#4      ------------------------------------------------------------
consensus_11029#0      CCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTG 335
consensus_11029#1      CCAATACCAGCACCTGATCCAGCACATCCAACAGTAGCCGCACCAGCACCAATGTATTTG 360
consensus_11029#3      ------------------------------------------------------------
                                                                                   

consensus_11029#2      GCTGCTTGATCAATATCTTTTCGGATAGAAGATGTATGGAA--TTGGCTCGTGGGGA--A 384
consensus_11029#4      ---------------TCTTTTCGGATAGGAGATGTATGGAA--TTGGCTNGTGGGGA--A 41
consensus_11029#0      GCTGCTTGATCAATATCTTTTCGGATAGAAGATGTATGGAA--TTGGCTCGTGGGGA--A 391
consensus_11029#1      GCTGCTTGATCAATATCTTTTCGGATAAAAAAT-TATGGAA--TTGGCTCGTGGGGA--A 415
consensus_11029#3      ----TATTTTTTTTTTTTTTTTTTTTAACAAGTCTATAACAATTTATTTTGCTAGTATTA 56
                                      * ****    **  *  * ***   *  **   * *   * *  *

consensus_11029#2      AATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACATTCATAAG 444
consensus_11029#4      AATACAGGNAACAGCTGCAGGAGAGAGNTTGACAGNTGAAGTTTTCNTGACATTCATAAG 101
consensus_11029#0      AATACAGGAAACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACATTCATAAG 451
consensus_11029#1      NATACAG-ANACAGCTGCAGGAGAGAGTTTGACAGTTGAAGTCTTCATGACATTCATAAG 474
consensus_11029#3      AGAGTGTCTATTATCTGCACAATGGACTT--ACATCCATA---TTCGGACCAGCACTGTG 111
                                   * *****  *  **  *  ***     *   ***    **    *  *

consensus_11029#2      TGTGGGTCTGAGGAC-CGCATTGAATAAGGTAACTGGCATCATCCTCAAACGCTAGCCCT 503
consensus_11029#4      TGTGGGTTTGAGGAC-CGCATAGA------------------------------------ 124
consensus_11029#0      TGTGGGTCTGAGGAC-CGCATTGAATAAGGTAACTGGCATCATCCTCAAACGCTAGCGTG 510
consensus_11029#1      TGTGGGTCTGAAAAGACGCATGAA--TAAGGTACTGGCATCATCCTCNAACGCTAACGTG 532
consensus_11029#3      GATGGGATGGAAAACAGGCCTAGGTCCATGTGGACACAGGTATCCTCAGGAGGCATCAAA 171
                         ****   **  *   ** *                                       

consensus_11029#2      CGGACCGAATTCTTGGCTGCGA---------------------------- 525
consensus_11029#4      --------------------------------------------------
consensus_11029#0      AAACTCAGCAACAAGACGACTGACCCCGAATTATTGGCTCGGA------- 553
consensus_11029#1      AAAACCTCCGTGCCCGAA-------------------------------- 550
consensus_11029#3      CCTGAGGAAAGCCATCACTAGACAAATTACGTGCATTGCTTCACTCAGTT 221