These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 1072 fasta sequence [GAAGCGCGATCTAAAGGCTAAAACATGATGTCAAGTGATGTGGTGCTCCCCGAATTTGGATCCCTTTCTCTCAGCAATAACCCTACAGGTTGGGGCCCAACAGACATACCAGAAGAGTTTAGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTCGCTATGTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA-GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGCAACAGAACCACCTAATGAAGAACCTGGTCATATTA] [-] EMBL CD097594 [GAAGCGCGATCTAAAGGCTAAAACATGATGTCAAGTGATGTGGTGCTCCCCGAATTTGGATCCCTTTCTCTCAGCAATAACCCTACAGGTTGGGGCCCAACAGACATACCAGAAGAGTTTAGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTCGCTATGTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGCGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCTAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACG ] [-] EMBL CD119150 [ CAGCAATAACCCTACAGGTTGGGGCCCAACAGACATACCAGAAGAGTTTAGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTCGCTATGTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGG ] [+] EMBL CD156591 [ GTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGTGAAACGAAAACTCCTGCTATTCGTCAAATATATAGATTCCCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGACAACGTATGATGTTACAAC ] [-] EMBL CD196763 [ CCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCTGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAA ] [+] EMBL CD086017 [ caCAGGAGGAGGGTACTCTTGGACAGGAGGCCGGTCAGGGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGAGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTAGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGC ] [+] EMBL CD130979 [ AGGTGCA GGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGAAGAAATGGAG ] [+] EMBL CD191811 [ GGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGAT ] [+] EMBL CD193897 [ GTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGAC ] [+] EMBL CD116109 [ AGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATT ] [-] EMBL CD196224 [ AGACGGTGGCAACACTGGGGACCNCAAGGTGTCGGTCAGCGACGAGGGGGAACNCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACAC ] [+] EMBL CD116298 [ AGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTGCGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCTCTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTnccaca ] [+] EMBL CD156806 [ GGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCT ] [+] EMBL CD118552 [ TTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCT ] [+] EMBL CD118694 [ TTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGNGATCT ] [+] EMBL CD118664 [ TTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCT ] [-] EMBL CD117419 [ TGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGC ] [-] EMBL CD117326 [ TGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAACGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGC ] [-] EMBL CD117527 [ TGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGC ] [-] EMBL CD117590 [ TGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGC ] [+] EMBL AI976281 [ AGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGCAACAGAACCACCTAATGAAGAACCTGGTCATATTA] [-] EMBL CD136560 [ CTAATAGTGATCGCAGACAGGCNCATAGGGCAGTGCGTGATGCGTCTATCAAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATCTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTC ] [-] EMBL CD193873 [ CGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTC ] consensusID : consensus_11030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [AACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACTCANACACCACTCAGGACAACACAATACCTCANACCATCATCAACATTACAACCAGTTCCAGTTGTCACTGCAGTCCAACACGCTACATCAGTCCCCACTAAATCACATCGACCACACTCAACA] [+] EMBL CD153164 [AACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACTCANACACCACTCAGGACAACACAATACCTCANACCATCATCAACATTACAACCAGTTCCAGTTGTCACTGCAGTCCAACACGCTACATCAGTCCCCACTAAATCACATCGACCACACTCAACA] consensusID : consensus_11030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 553 fasta sequence [TCCTCCAGTCTTTAATGTCATTATCTTGCGTGTTCAGTCTCTTTCAACTAATGATTNTGCTTTGTAGTCATATTGGTCACATTTTTACGCATACGGGTTGCTGTAATTTCTGTTGAAGAACTTAATTGACCTTCAGATCTCGAATCAAACTGTCACATGCTATATTATTTTTACCCAGTATGCTAAATACTTCCTTACTTGCATCGGATTTACATAACTATGGGTCATACAAATTTTTAATCTACATTATTGTTTAATGATTTATTGGAGCCGTTTGTGTAACTAAAATATATCGTTTTTCTCTCCTCGATAAAATGCTTACGACCTTCATTCCACTCGTCCACTCATGAATATAATTGTACTATGTTATTTT--ACTTC--ATATGTTTGATCATCGAATCATCCAACTATAT-CCTTCTCATGCTCTCCATATATATATATATATATATATATATATATATATATATATATATATATATATATGCTGAAATTCAAT-TATTTCTAGGATTCAGTTTTGAGCAAAAATATACTAAAAGCTCCATTAACCTTATGATTT] [-] EMBL AW017172 [TCCTCCAGTCTTTAATGTCATTATCTTGCGTGTTCAGTCTCTTTCAACTAATGATTNTGCTTTGTAGTCATATTGGTCACATTTTTACGCATACGGGTTGCTGTAATTTCTGTTGAAGAACTTAATTGACCTTCAGATCTCGAATCAAACTGTCACATGCTATATTATTTTTACCCAGTATGCTAAATACTTCCTTACTTGCATCGGATTTACATAACTATGGGTCATACAAATTTTTAATCTACATTATTGTTTAATGATTTATTGGAGCCGTTTGTGTAACTAAAATATATCGTTTTTCTCTCCTCGATAAAATGCTTACGACCTTCATTCCACTCGTCCACTCATGAATATAATTGTACTATGTTATTTT ACTTC ATATGTTTGATCATCGAATCATCCAACTATAT CCTTCTCATGCTCTCCATATATATATATATATATATATATATATATATATATATATATATATATATATATGCTGAAATTCAAT TATTTCTAGGATTCAGTTTTGAGCAAAAATATACTAAAAGCTCCATTAACCTTATGATTT] [+] EMBL AI820464 [ GGTTGCTGTAATTTCTGTTGAAGAACTTAATTGACCTTCAGATCTCGAATCAAACTGTCACATGCTATATTATTTTTACCCAGTATGCTAAATACTTCCTTACTTGCATCGGATTTACATAACTATGGGTCATACAAATTTTTAATCTACATTATTGTTTAATGATTTATTGGAGCCGTTTGTGTAACTAAAATATATCGGTTTTCTCTCCTCGATAAAATGCTTACGACCTTCATTCCACTCGTCCACTCATG ATATTATTGGACTAAGGTAATTTACACTTCCAATA GATTGATCATCGAATCATCCAA TATATACCTTCTCCAGC CTCCATATATATATATATATATATATATATATATATATATATATATATATATATATA GCGGAAATTCACTATA TTCTAGAGTTCAGTTTTTAGAAAAAATACA TAAg ] consensusID : consensus_11030#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 483 fasta sequence [GAATTTAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTAACCAGTTGCAGTCCTAACGTATCGATGGGAAGATTCAAACAAACAATACTAAATGAATTTTCCAGTTCATTTAATGAATGAGTACTGCATGTAAGAGTATAATTTTCACTCAGGATTTCATTTCAAACTCTAACTTCGACTTTATTTACTTTTTTCATCCGACAAGTTTAAACGTACAACAGTGATTGTTCATAAAAGACGTATGTATGTAATGAAGGAGAAGTCAGGTGGGACAACCAATTTATTGTTTAATACAAAATTACAAAAATTCTTGGTAAAATATGAGAACCATACATTAAATACTTCATTTAAGAATTTTCATCATTTGTCCTTCACATTCGGTATGATTCTTCCAATTGATAATTCCTTTCTGTTCTCTTCAACTCGATCTTCTTGGCCTTCTGCTGGCAGGTTTTTCACTTCCG] [+] EMBL CD089782 [GAATTTAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTAACCAGTTGCAGTCCTAACGTATCGATGGGAAGATTCAAACAAACAATACTAAATGAATTTTCCAGTTCATTTAATGAATGAGTACTGCATGTAAGAGTATAATTTTCACTCAGGATTTCATTTCAAACTCTAACTTCGACTTTATTTACTTTTTTCATCCGACAAGTTTAAACGTACAACAGTGATTGTTCATAAAAGACGTATGTATGTAATGAAGGAGAAGTCAGGTGGGACAACCAATTTATTGTTTAATACAAAATTACAAAAATTCTTGGTAAAATATGAGAACCATACATTAAATACTTCATTTAAGAATTTTCATCATTTGTCCTTCACATTCGGTATGATTCTTCCAATTGATAATTCCTTTCTGTTCTCTTCAACTCGATCTTCTTGGCCTTCTGCTGGCAGGTTTTTCACTTCCG] [+] EMBL CD089718 [GAATTTAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTAACCAGTTGCAGTCCTAACGTATCGATGGGAAGATTCAAACAAACAATACTAAATGAATTTTCCAGTTCATTTAATGAATGAGTACTGCATGTAAGAGTATAATTTTCACTCAGGATTTCATTTCAAACTCTAACTTCGACTTTATTTACTTTTTTCATCCGACAAGTTTAAACGTACAACAGTGATTGTTCATAAAAGACGTATGTATGTAATGAAGGAGAAGTCAGGTGGGACAACCAATTTATTGTTTAATACAAAATTACAAAAATTCTTGGTAAAATATGAGAACCATACATTAAATACTTCATTTAAGAATTTTCATCATTTGTCCTTCACATTCGGTATGATTCTTCCAATTGATAATTCCTTTCTGTTCTCTTCAACTCGATCTTCTTGGCCTTCTG ] consensusID : consensus_11030#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [AGAATTATCTTCTTCTTCTTCTTCTTCGATTACCACAAACAGCTACTGGAGTTAAAACTGGTAGCAGTTTGACAATTGGCGTTGAAGTGTCAAAATCGGACTTTCCTACCACCCGGAGCAACAAGATCGATGTTACGTTTGAAAAAGTTGATCAATTCTAAAAATACTCCATTTCAAACACGTAATCCATTCTCATTACCTGTCAAACGTCTATGGTGTTATTTAGTTCGACAATCTGGAATAGATGATATATTTTTACGTCATATATTTCGTAAACCATATCTTATACAATCCGTTATTACACCGAATATTAAATTAACATTATCACCATCATCATCATCATCATCATCATCAGTTACTTTTGGATCATCGGAACTTAACAATCTACCTGGTTTAATAAATTCTACATCATCGTCTAATCTGAAAACTGTTTCTTCTGCTGCATCG] [+] EMBL BF936974 [AGAATTATCTTCTTCTTCTTCTTCTTCGATTACCACAAACAGCTACTGGAGTTAAAACTGGTAGCAGTTTGACAATTGGCGTTGAAGTGTCAAAATCGGACTTTCCTACCACCCGGAGCAACAAGATCGATGTTACGTTTGAAAAAGTTGATCAATTCTAAAAATACTCCATTTCAAACACGTAATCCATTCTCATTACCTGTCAAACGTCTATGGTGTTATTTAGTTCGACAATCTGGAATAGATGATATATTTTTACGTCATATATTTCGTAAACCATATCTTATACAATCCGTTATTACACCGAATATTAAATTAACATTATCACCATCATCATCATCATCATCATCATCAGTTACTTTTGGATCATCGGAACTTAACAATCTACCTGGTTTAATAAATTCTACATCATCGTCTAATCTGAAAACTGTTTCTTCTGCTGCATCG] consensusID : consensus_11030#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [AATTGATCAGTCTCTTATTGGCATATGTGCATACTGTGCGTATTGCCTCGATATTGCCTTAACTCACATGGATTATAAGCAAAGATGGATGGTGGCTAGCAGGGAATCCAGAACGCGCGTTTCGTCCTATTTGGCACTCGTCTGCTGGATGTAGCTGCATCTCACCGTTGATGTTCACTCTGGGACTTGAACGCAGTACCTCTCGCTCCAAACATCATCGCGTTATCCACTCACCTACCGAGACCTGATAGCCACTTACTTGTGCAATGTGTTTTTCCATGGATTTGTAATTGTGGATGAACATGAGAAAAAGGTAATGAATATTTGTTAATATAAATTTTTC] [+] EMBL AI740227 [AATTGATCAGTCTCTTATTGGCATATGTGCATACTGTGCGTATTGCCTCGATATTGCCTTAACTCACATGGATTATAAGCAAAGATGGATGGTGGCTAGCAGGGAATCCAGAACGCGCGTTTCGTCCTATTTGGCACTCGTCTGCTGGATGTAGCTGCATCTCACCGTTGATGTTCACTCTGGGACTTGAACGCAGTACCTCTCGCTCCAAACATCATCGCGTTATCCACTCACCTACCGAGACCTGATAGCCACTTACTTGTGCAATGTGTTTTTCCATGGATTTGTAATTGTGGATGAACATGAGAAAAAGGTAATGAATATTTGTTAATATAAATTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11030#1 ------------------------------------------------------------ consensus_11030#4 ------------------------------------------------------------ consensus_11030#3 ------------------------------------------------------------ consensus_11030#2 ------------------------------------------------------------ consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 GAAGCGCGATCTAAAGGCTAAAACATGATGTCAAGTGATGTGGTGCTCCCCGAATTTGGA 60 consensus_11030#1 ------------------------------------------------------------ consensus_11030#4 ------------------------------------------------------------ consensus_11030#3 ------------------------------------------------------------ consensus_11030#2 ------------------------------------------------------------ consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 TCCCTTTCTCTCAGCAATAACCCTACAGGTTGGGGCCCAACAGACATACCAGAAGAGTTT 120 consensus_11030#1 ------------------------------------------------------------ consensus_11030#4 ------------------------------------------------------------ consensus_11030#3 ------------------------------------------------------------ consensus_11030#2 ------------------------------------------------------------ consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 AGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGG 180 consensus_11030#1 ------------------------------------------------------------ consensus_11030#4 ------------------------------------------------------------ consensus_11030#3 ------------------------------------------------------------ consensus_11030#2 ------------------------------------------------------------ consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 TCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTCGCTATGTCTCCCAGTCTGTCGGT 240 consensus_11030#1 ------------------------------------------------------------ consensus_11030#4 ------------------------------------------------------------ consensus_11030#3 ------------------------------------------------------------ consensus_11030#2 ------------------------------------------------------------ consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 TCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTT 300 consensus_11030#1 ------------------------------------------------------------ consensus_11030#4 ------------------------------------------------------------ consensus_11030#3 ------------------------------------------------------------ consensus_11030#2 ------------------------------------------------------------ consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 CGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGCGTGGTCGCCGT 360 consensus_11030#1 -------------------------------------------------AACCAACCACT 11 consensus_11030#4 ------------------------------------------------------------ consensus_11030#3 ------------------------------------------------------------ consensus_11030#2 ------------------------------------------------------------ consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 GGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCAGGATATCAGATG 420 consensus_11030#1 CTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCA 71 consensus_11030#4 ------------------------------------------------------------ consensus_11030#3 ------------------------------------------------------------ consensus_11030#2 ------------------------------------------------------------ consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 ATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGT 480 consensus_11030#1 ATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCA 131 consensus_11030#4 ------------------------------------AGAATTA----TCTTCTTCTTCTT 20 consensus_11030#3 -------------------------------------GAATTTAGGCTATATCGAGGCAA 23 consensus_11030#2 --------------------------------TCCTCCAGTCTTTAATGTCATTATCTTG 28 consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 ATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGA 540 consensus_11030#1 CTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCAC 191 consensus_11030#4 CTTCTTCGATTACCA--CAAACA-----------GCTACTGGAGTTAA--AACTGGTAGC 65 consensus_11030#3 TACGCACAGTATGCACATATGC-------------CAATTAGAGACTA---ACCAGTTGC 67 consensus_11030#2 CGTGTTCAGTCTCTT--TCAACTA----ATGATTNTGCTTTGTAGTCAT--ATTGGTCAC 80 consensus_11030#5 ------------------------------------------------------------ consensus_11030#0 CGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGC 600 consensus_11030#1 TCTTGTC-GCC-GCCACC-GCCACCGCCACAA-AAACTATACTC--CCGTCTAGTCA--G 243 consensus_11030#4 AGTT-TG-ACA-ATTGGC-GTTGAAGTGTCAA-AATCGGACTTT--CCTACCACCCG--G 116 consensus_11030#3 AGTCCTA-ACGTATCGAT-GGGAAGATTCAAACAAACAATACTAAATGAATTTTCCA--G 123 consensus_11030#2 ATTTTTACGCATACGGGTTGCTGTAATTTCTGTTGAAGAACTTAATTGACCTTCAGA--T 138 consensus_11030#5 -----------------------------------------------------------A 1 consensus_11030#0 AGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATG 660 consensus_11030#1 TACACTCCA--ATTCAAAAATACACTCGC-----TCGCTCACATCTCT---CGATACAAC 293 consensus_11030#4 AGCAA-CAA--GATCGATGTTACGTTTGAAAAAGTTGATCAATTCTAA---AAATACTCC 170 consensus_11030#3 TTCATTTAATGAATGAGTACTGCATGTAAGAGTATAATT---TTCACT---CAGGATTTC 177 consensus_11030#2 CTCGAATCA--AACTGTCACATGCTATATTATTTTTACCCAGTATGCT---AAATACTTC 193 consensus_11030#5 ATTGATCAGTCTCTTATTGGCATATGTGCATACTGTGCGTA-TTGCCT---CGATATTGC 57 consensus_11030#0 TTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCT 720 * consensus_11030#1 TACA-CCTCTTC-------ACAGTCC-ACTCTCTCCATC--GCCAAACCAACACCACCGT 342 consensus_11030#4 ATTT-CAAACAC-------GTAATCC-ATTCTCATTACCT-GTCAAACGTCTATGGTGTT 220 consensus_11030#3 ATTT-CAAACTC-------TAACTTCGACTTTATTTACTTTTTTCATCCGACAAGTTTAA 229 consensus_11030#2 CTTA-CTTGCAT-------CGGATTTACATAACTATGGGTCATACAAATTTTTAATCTAC 245 consensus_11030#5 CTTAACTCACAT-------GGATTATAAGCAAAGATGGAT-----GGTGGCTAGCAGGGA 105 consensus_11030#0 ATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGC 780 * consensus_11030#1 CTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAA 402 consensus_11030#4 ATTTAGTTC-GACAATCTGGAATAGATGATATATTTTTACGTCATA-----TATTTCGTA 274 consensus_11030#3 ACGTACAAC-AGTGATTGTTCATAAAAGACGTATGTATGTAATGAAGGAGAAGTCAGGTG 288 consensus_11030#2 ATTATTGTTTAATGATTTATTG-GAGCCGTTTGTGTAACTAAAATATATCGTTTTTCTCT 304 consensus_11030#5 ATCCAGAACGCGCGTTTCGTCCTATTTGGCACTCGTCTGCTGGATGT----AGCTGCATC 161 consensus_11030#0 ACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACAC----AGTTACGAC 836 consensus_11030#1 ----AACTATACTCCCGTCTAGTCAGTACACTCCAA-----CTCAAAAATACACTCGCTC 453 consensus_11030#4 ----AACCATA-TCTTATACAATCCGT-TATTACA------CCGAATATTAAATTAACAT 322 consensus_11030#3 GGACAACCAATTTATTGTTTAATACAA-AATTACAAAAATTCTTGGTAAAATATGAGAAC 347 consensus_11030#2 CCTCGATAAAATGCTTACGACCTTCATTCCACTCGTCCACTCATGAATATAATTGTACTA 364 consensus_11030#5 -----TCACCGTTGATGTTCACTCTGGGACTTGAA------CGCAGTACCTCTCGCTCCA 210 consensus_11030#0 TTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCAC 896 consensus_11030#1 GCTCACATCTCTCGATACAACTACACCTC--TTCACAG---TCCACTCTCTCCAT-CGCC 507 consensus_11030#4 TATCACCATCATCATCATCATCA----TC--ATCATCA---GTTACTTT-TGGAT-CATC 371 consensus_11030#3 CAT-ACATTAAATACTTCATTTAAGAATT--TTCATCA---TTTGTCCTTCACATTCGGT 401 consensus_11030#2 TGTTATTTTACTTCATATGTTTGATCATCGAATCATCCAACTATATCCTTCTCATGCTCT 424 consensus_11030#5 AACATCATCGCGTTATCCACTCACCTACCGAGACCTGA----TAGCCACTTACTTGTGCA 266 consensus_11030#0 AGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCAT 956 * consensus_11030#1 AAACCAACACTCANACACC-ACTCAGGACAACACAATACCTCANACCAT-CATCAACATT 565 consensus_11030#4 GGAAC----TTAACAATCT-ACCTGGTTTAATAAA---TTCTACATCAT-CGTCTAATCT 422 consensus_11030#3 ATGATTCTTCCAATTGATA-ATTCCTTTCTGTTCTC--TTCAACTCGAT-CTTCTTGGCC 457 consensus_11030#2 CCATATATATATATATATATATATATATATATATATATATATATATATA-TATATATGCT 483 consensus_11030#5 ATGTGTTTTTCCATGGATTTGTAATTGTGGATGAACATGAGAAAAAGGT-AATGAATATT 325 consensus_11030#0 TGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTT 1016 * * * consensus_11030#1 ACAACCAGTTCCAGTTGTCACTGCAGTCCAACACGCTACATCAGTCCCCACTAAATCACA 625 consensus_11030#4 GAAAACTGTTTCTTCTGCTGCATCG----------------------------------- 447 consensus_11030#3 TTCTGCTGGCAGGTTTTTCACTTCCG---------------------------------- 483 consensus_11030#2 GAAATTCAATTATTTCTAGGATTCAGTTTTGAGCAAAAATATACTAAAAGCTCCATTAAC 543 consensus_11030#5 TGTTAATATAAATTTTTC------------------------------------------ 343 consensus_11030#0 CGTTAGTGTATGTGAAACTGCAACAGAACCACCTAATGAAGAACCTGGTCATATTA---- 1072 consensus_11030#1 TCGACCACACTCAACA 641 consensus_11030#4 ---------------- consensus_11030#3 ---------------- consensus_11030#2 CTTATGATTT------ 553 consensus_11030#5 ---------------- consensus_11030#0 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||